genome.fa.s10.2.7.7.80.10.50.1000.100.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  100  of  136  ( 16211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33559368--33559438	24	2.9	25	85	10	69	38	21	23	16	1.93
33559385--33559438	24	2.2	24	93	6	92	37	20	25	16	1.93
33570429--33570470	15	2.7	16	82	14	52	52	2	0	45	1.13
33570438--33570479	15	2.9	15	82	10	52	52	0	0	47	1.00
33570645--33570692	26	1.9	25	84	16	64	52	2	0	45	1.12
33570600--33570828	92	2.5	92	83	8	236	47	3	3	44	1.38
33575792--33575859	23	3.0	23	93	0	118	48	25	7	19	1.74
33575845--33575890	22	2.1	21	84	11	58	58	17	4	19	1.55
33577764--33577807	19	2.3	20	84	7	56	36	0	2	61	1.09
33584179--33584271	44	2.1	45	80	6	100	47	8	13	30	1.73
33587960--33587989	2	15.0	2	100	0	60	50	0	0	50	1.00
33592302--33592338	18	1.9	19	89	10	58	62	2	2	32	1.23
33592321--33592362	13	3.4	12	81	12	50	66	0	4	28	1.12
33598678--33598766	31	2.9	31	88	3	126	56	12	1	30	1.43
33603943--33603995	24	2.2	24	93	0	88	39	18	33	7	1.79
33603920--33603983	30	2.1	30	85	5	85	42	18	28	10	1.84
33603950--33604005	24	2.3	24	96	0	103	35	19	37	7	1.79
33606052--33606355	150	2.0	149	86	4	423	39	8	6	45	1.61
33619480--33619508	3	9.7	3	100	0	58	68	0	0	31	0.89
33624491--33624553	15	4.3	15	70	15	51	73	0	1	25	0.93
33624491--33624554	22	3.0	20	75	20	58	71	0	1	26	0.94
33625655--33625843	92	2.1	92	85	0	252	42	14	11	31	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33628776--33628872	42	2.3	42	94	0	167	38	9	26	25	1.86
33632207--33632252	19	2.4	19	96	0	83	30	19	32	17	1.95
33632574--33632612	13	2.9	13	96	3	69	33	38	7	20	1.81
33640918--33640942	2	12.5	2	100	0	50	52	0	0	48	1.00
33650684--33650713	15	2.0	15	100	0	60	40	6	0	53	1.27
33650735--33650934	100	2.0	100	99	0	391	41	11	8	39	1.71
33653267--33653623	42	8.4	41	80	6	365	33	20	20	25	1.97
33653269--33653623	85	4.2	83	81	8	349	33	20	20	25	1.97
33653266--33653558	127	2.3	126	84	7	387	34	19	20	25	1.96
33654007--33654060	21	2.6	21	90	0	81	5	44	18	31	1.73
33655854--33656419	114	5.0	113	82	5	642	26	25	22	25	2.00
33655856--33656410	227	2.4	228	84	5	728	26	24	22	25	2.00
33661938--33662077	61	2.2	63	81	6	160	45	17	9	27	1.79
33661940--33662095	31	5.0	31	75	8	113	45	17	8	28	1.77
33662014--33662303	93	3.1	92	82	5	275	44	17	6	31	1.75
33662101--33662248	31	4.8	30	72	15	113	42	17	6	33	1.76
33662092--33662303	92	2.3	92	89	1	318	43	17	7	31	1.76
33663015--33663066	26	2.0	26	100	0	104	34	19	15	30	1.93
33669903--33669928	3	8.7	3	100	0	52	65	0	0	34	0.93
33670162--33670237	31	2.5	31	82	6	84	36	11	11	39	1.79
33677325--33677355	3	10.3	3	100	0	62	67	0	0	32	0.91
33677489--33677530	16	2.6	16	92	0	66	33	0	35	30	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33677775--33677809	18	2.0	17	88	5	52	54	0	0	45	0.99
33689072--33689107	3	12.0	3	87	0	54	27	66	2	2	1.19
33706287--33706353	31	2.2	31	91	0	107	32	10	11	44	1.75
33715034--33715079	17	2.7	17	82	0	56	39	0	0	60	0.97
33715074--33715128	29	2.0	26	86	10	74	34	5	0	60	1.20
33715095--33715139	20	2.3	19	80	3	54	37	4	0	57	1.19
33719123--33719156	17	1.9	18	88	5	52	38	0	14	47	1.45
33721735--33721816	24	3.4	24	78	6	85	21	30	17	30	1.96
33721865--33721934	25	2.8	24	87	6	95	15	27	25	31	1.96
33721878--33721965	24	3.6	23	76	11	77	20	25	20	34	1.97
33721972--33722026	25	2.2	25	77	6	58	21	25	20	32	1.97
33723547--33723601	22	2.5	22	78	0	65	61	10	14	12	1.56
33724877--33724949	10	7.5	10	80	9	80	60	1	1	36	1.14
33724886--33724937	19	2.7	18	85	8	59	63	1	1	32	1.16
33724880--33724960	20	4.2	18	78	13	65	59	2	1	37	1.19
33724880--33724960	38	2.1	39	81	6	94	59	2	1	37	1.19
33724954--33725139	90	2.1	91	98	1	365	43	8	6	41	1.61
33727359--33727411	27	2.0	27	88	0	79	26	16	13	43	1.85
33746810--33746901	29	3.2	29	78	7	107	39	3	28	29	1.73
33746957--33746985	14	2.0	15	93	6	51	34	0	6	58	1.25
33765891--33765927	3	12.3	3	100	0	74	67	0	0	32	0.91
33772983--33773023	6	6.8	6	100	0	82	17	51	14	17	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33775739--33775908	92	1.8	92	85	5	236	28	20	18	32	1.96
33782938--33783002	23	2.9	22	80	11	69	49	0	1	49	1.10
33784112--33784170	29	2.0	30	83	9	77	49	13	8	28	1.71
33795613--33795852	101	2.4	101	87	0	345	32	14	23	29	1.94
33798299--33798324	13	2.0	13	100	0	52	76	7	7	7	1.15
33812287--33812322	17	2.1	17	100	0	72	11	11	11	66	1.45
33812650--33812713	33	1.9	34	87	6	96	43	17	4	34	1.69
33822228--33822325	45	2.2	45	85	1	126	32	27	5	34	1.79
33822216--33822325	45	2.6	44	78	8	122	31	28	5	34	1.80
33822304--33823109	16	50.4	16	99	0	1594	25	37	0	37	1.56
33834523--33834551	2	14.5	2	100	0	58	48	0	0	51	1.00
33840296--33840339	20	2.3	19	80	4	52	43	0	2	54	1.12
33841856--33841902	24	2.0	24	91	8	78	57	0	0	42	0.98
33842337--33842380	20	2.2	19	84	8	52	38	0	2	59	1.10
33851045--33851200	82	1.9	81	82	3	197	32	16	9	41	1.81
33854162--33854209	23	2.1	23	100	0	96	39	25	16	18	1.91
33862973--33863042	28	2.5	27	73	15	70	45	31	4	18	1.69
33862973--33863046	14	5.3	14	69	18	55	47	31	4	17	1.66
33863025--33863130	49	2.2	49	79	5	117	39	38	4	16	1.70
33868826--33868855	8	3.8	8	95	0	51	30	0	3	66	1.07
33868952--33868985	16	2.1	16	88	0	50	64	0	2	32	1.08
33870938--33871020	36	2.2	37	91	4	132	33	2	38	25	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33871335--33871394	22	2.8	22	70	5	61	36	18	6	38	1.77
33871643--33871684	21	1.9	22	85	9	59	40	7	0	52	1.29
33872561--33872601	14	2.9	14	85	10	57	46	7	12	34	1.69
33872921--33873219	148	2.0	149	98	0	582	41	16	13	28	1.86
33875249--33875351	41	2.5	41	93	0	170	33	22	18	26	1.97
33875797--33875922	64	2.0	64	100	0	252	46	16	3	34	1.63
33882599--33882633	3	11.7	3	100	0	70	34	0	0	65	0.93
33885793--33885832	8	5.1	8	90	6	64	12	2	0	85	0.71
33885793--33885832	15	2.6	15	92	4	62	12	2	0	85	0.71
33885793--33885842	23	2.2	23	85	0	64	10	6	2	82	0.92
33889335--33889403	30	2.3	30	84	0	84	27	11	18	42	1.85
33893717--33893743	12	2.2	12	100	0	54	55	0	22	22	1.44
33902638--33902681	12	3.8	12	78	3	54	45	2	0	52	1.13
33915938--33915977	15	2.7	16	74	22	50	32	0	7	60	1.25
33918987--33919026	20	2.0	20	90	0	62	50	0	50	0	1.00
33920044--33920086	2	21.5	2	90	0	68	46	2	2	48	1.27
33928419--33928455	9	4.1	9	92	0	65	29	10	13	45	1.77
33929272--33929309	18	2.1	19	85	5	51	76	7	0	15	1.01
33929270--33929320	15	3.5	15	75	2	50	76	5	0	17	0.98
33929558--33930093	153	3.5	152	86	4	736	50	7	9	32	1.63
33952600--33952666	31	2.2	31	91	0	107	26	11	20	40	1.88
33954306--33954391	45	1.9	45	87	0	127	43	19	11	25	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33954620--33954758	46	3.0	46	88	4	208	30	25	9	34	1.88
33958114--33958150	11	3.4	11	96	0	65	54	0	5	40	1.24
33958108--33958161	22	2.4	23	75	3	65	61	0	3	35	1.14
33958988--33959029	11	3.7	12	90	9	70	50	0	4	45	1.23
33961036--33961088	27	2.0	27	96	0	97	26	28	24	20	1.99
33961691--33961755	30	2.2	29	81	8	76	30	27	6	35	1.81
33961698--33961755	30	1.9	30	85	0	80	31	24	6	37	1.82
33961279--33961830	275	2.0	277	90	1	876	28	21	9	40	1.84
33962433--33962466	11	2.8	12	91	8	52	35	8	11	44	1.72
33967053--33967091	18	2.2	18	85	0	51	56	10	0	33	1.33

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136