genome.fa.s10.2.7.7.80.10.50.1000.99.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  99  of  136  ( 16211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33161969--33162109	44	3.3	43	75	20	152	1	30	0	67	1.04
33161970--33162144	40	4.3	42	72	21	133	1	32	1	65	1.07
33161946--33162110	84	2.0	83	82	14	204	1	31	0	66	1.04
33162100--33162155	26	2.2	26	80	6	60	0	37	1	60	1.07
33162184--33162235	27	1.9	27	96	0	95	17	30	28	23	1.97
33162284--33162332	25	2.0	25	95	0	89	53	0	8	38	1.31
33172910--33172956	24	1.9	24	86	4	67	36	0	38	25	1.56
33173943--33174108	27	6.2	27	80	1	199	43	21	16	18	1.87
33173956--33174142	27	7.0	26	77	11	83	42	20	16	20	1.89
33174342--33174396	26	2.1	26	89	0	83	21	20	21	36	1.95
33174507--33174608	28	3.6	28	81	2	125	27	21	21	29	1.99
33175463--33175502	19	2.1	19	100	0	80	32	5	27	35	1.79
33180050--33180207	78	2.0	78	92	2	264	40	12	17	29	1.86
33182407--33182434	2	14.0	2	100	0	56	50	0	0	50	1.00
33182682--33182707	2	13.0	2	100	0	52	50	0	0	50	1.00
33184780--33184812	3	11.0	3	100	0	66	33	0	0	66	0.92
33190913--33190948	3	12.0	3	93	0	63	30	0	36	33	1.58
33197908--33197935	1	28.0	1	100	0	56	100	0	0	0	0.00
33207220--33207278	31	1.9	31	82	6	75	45	11	3	38	1.58
33218538--33218611	37	2.0	37	89	0	112	45	18	6	28	1.75
33218921--33218951	16	1.9	16	93	0	53	25	0	3	70	1.02
33220166--33220202	18	2.1	18	100	0	74	35	21	5	37	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33227834--33227971	69	2.0	69	92	1	233	32	23	15	27	1.96
33231340--33231388	24	2.0	24	100	0	98	46	8	28	16	1.75
33232588--33232617	3	10.3	3	92	7	53	30	0	0	70	0.88
33237793--33238052	130	2.0	130	97	1	495	36	9	15	38	1.80
33239271--33239303	16	2.1	16	100	0	66	36	6	36	21	1.78
33240633--33240657	13	1.9	13	100	0	50	32	32	24	12	1.91
33252507--33252546	21	1.9	21	89	0	62	20	7	15	57	1.61
33254092--33254302	105	2.0	106	98	0	406	38	13	18	29	1.89
33262883--33263655	386	2.0	386	100	0	1546	39	18	11	30	1.86
33270390--33270450	29	2.0	31	87	9	90	26	1	3	68	1.14
33270390--33270449	30	2.0	29	83	3	75	26	1	3	68	1.15
33273090--33273170	17	4.6	17	69	20	60	38	2	3	55	1.31
33273812--33273874	26	2.4	26	89	0	90	36	15	9	38	1.81
33274980--33275074	47	2.0	47	97	0	181	27	18	26	27	1.98
33287086--33287115	13	2.3	13	94	0	51	50	6	0	43	1.28
33291076--33291109	15	2.2	16	89	5	52	41	0	14	44	1.45
33291471--33291726	87	2.9	87	91	2	399	25	8	29	36	1.86
33291758--33291782	4	6.2	4	100	0	50	24	0	0	76	0.80
33294136--33294160	3	8.3	3	100	0	50	32	0	0	68	0.90
33300105--33300165	24	2.5	24	72	15	63	32	24	22	19	1.97
33301012--33301064	19	2.8	18	75	11	52	43	18	0	37	1.51
33304026--33304095	36	1.9	37	97	2	133	47	5	10	37	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33305296--33305325	13	2.3	13	94	0	51	40	40	0	20	1.52
33315598--33315652	9	6.2	8	91	6	65	25	10	23	40	1.87
33315601--33315652	27	1.9	27	88	7	79	26	9	25	38	1.86
33317750--33317775	11	2.4	11	100	0	52	38	0	0	61	0.96
33324339--33324377	19	2.1	19	90	4	62	58	5	0	35	1.20
33331515--33331577	29	2.2	29	85	5	83	41	20	6	31	1.77
33332478--33332786	154	2.0	155	99	0	611	37	12	4	45	1.62
33334742--33334773	17	1.9	16	93	6	55	43	9	0	46	1.35
33335524--33335565	21	2.0	21	85	0	57	61	0	2	35	1.09
33335713--33335752	14	2.9	14	92	7	64	45	7	5	42	1.54
33336823--33336848	13	2.0	13	100	0	52	46	7	0	46	1.31
33338159--33338206	21	2.4	21	86	6	64	50	0	0	50	1.00
33341663--33341697	11	3.1	11	87	4	52	85	0	2	11	0.69
33352511--33352572	12	5.1	13	75	13	60	41	8	0	50	1.32
33352506--33352588	36	2.3	36	89	6	123	43	7	0	49	1.30
33352499--33352558	23	2.5	22	76	12	57	43	6	0	50	1.28
33356022--33356053	16	2.0	16	100	0	64	37	12	37	12	1.81
33356816--33356879	24	2.7	24	76	7	60	51	1	6	40	1.36
33358141--33358180	17	2.4	17	91	8	64	5	5	42	47	1.47
33360280--33360331	20	2.6	20	90	0	77	21	26	0	51	1.47
33361078--33361169	36	2.6	36	79	8	116	39	35	10	14	1.81
33361145--33361233	35	2.5	35	80	3	108	37	34	12	15	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33370930--33370986	29	2.0	29	89	0	87	22	12	33	31	1.91
33372658--33372717	31	1.9	31	86	0	84	23	13	8	55	1.65
33373793--33373851	31	1.9	31	85	0	82	54	11	15	18	1.71
33375101--33375137	17	2.2	17	95	0	65	16	37	27	18	1.92
33391819--33391859	22	1.9	21	85	5	55	26	21	9	41	1.84
33393316--33393379	11	5.9	11	80	12	71	56	1	1	40	1.18
33393316--33393421	53	2.0	54	90	1	169	58	0	1	38	1.15
33393354--33393439	42	2.1	40	93	4	145	65	0	1	33	1.01
33393322--33393439	53	2.3	53	85	2	159	63	0	1	33	1.10
33394189--33394276	31	2.9	29	75	8	86	46	12	5	35	1.65
33400965--33401000	17	2.1	17	89	0	54	61	8	2	27	1.39
33401058--33401150	22	4.3	22	71	11	75	31	0	5	63	1.17
33409341--33409460	44	2.8	43	79	11	129	22	24	20	32	1.98
33421513--33421643	21	6.3	21	79	1	122	16	18	16	48	1.81
33421875--33421901	8	3.4	8	100	0	54	37	0	14	48	1.45
33423595--33423682	10	8.9	10	74	17	60	38	3	1	56	1.23
33431491--33431541	13	4.0	12	78	19	50	39	0	1	58	1.09
33436008--33436393	141	2.8	136	81	8	442	51	11	12	24	1.73
33436008--33436412	138	2.9	136	79	8	430	50	12	12	23	1.74
33436975--33437043	31	2.2	31	84	5	86	53	13	11	21	1.70
33452392--33452417	3	8.7	3	100	0	52	69	0	0	30	0.89
33457331--33457373	22	2.0	22	90	0	68	25	13	16	44	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33459617--33459681	27	2.4	26	87	7	94	32	4	0	63	1.15
33460765--33460809	21	2.1	21	100	0	90	33	24	13	28	1.93
33483709--33484034	169	1.9	171	87	3	487	27	11	24	35	1.90
33485925--33486115	101	1.9	101	97	0	364	24	14	16	45	1.84
33491138--33491278	33	4.3	33	62	20	80	53	4	8	33	1.51
33491109--33491318	99	2.1	100	98	1	404	51	4	7	35	1.51
33492202--33492244	21	2.0	23	81	9	54	44	9	11	34	1.73
33492281--33492320	20	1.9	20	85	10	53	67	10	10	12	1.42
33495412--33495452	19	2.2	19	91	4	66	26	17	9	46	1.79
33497579--33497681	45	2.3	45	91	1	161	31	18	12	37	1.88
33498946--33499122	57	3.1	57	86	4	223	48	5	17	28	1.70
33500957--33500997	17	2.4	17	100	0	82	51	9	0	39	1.35
33503965--33504047	43	1.9	43	100	0	166	16	25	16	40	1.90
33520349--33520432	40	2.1	39	93	2	141	63	0	2	34	1.08
33520349--33520443	40	2.4	39	85	7	136	63	0	2	34	1.07
33520923--33520967	19	2.4	19	81	7	56	62	4	6	26	1.39
33521053--33521092	15	2.7	15	82	17	57	7	10	0	82	0.84
33521121--33521173	27	2.0	26	82	14	63	11	18	1	67	1.30
33524035--33524076	23	1.9	22	85	9	59	42	2	0	54	1.13
33524094--33524120	7	3.9	7	100	0	54	85	0	0	14	0.61
33524317--33524343	7	3.9	7	100	0	54	85	0	0	14	0.61
33524036--33524484	223	2.0	224	99	0	891	39	9	16	34	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33532548--33532671	62	2.0	62	88	0	185	23	19	13	43	1.86
33533527--33533562	15	2.4	15	90	0	54	30	16	0	52	1.44
33533828--33533863	18	2.0	18	88	0	54	44	2	0	52	1.15
33534253--33534292	20	2.0	20	90	0	62	27	10	12	50	1.72
33535026--33535058	15	2.1	16	94	5	59	60	6	18	15	1.54
33537510--33537577	25	2.6	27	86	13	97	38	7	27	26	1.83
33537798--33537901	52	2.0	52	94	0	181	38	6	16	38	1.75
33541712--33541754	21	2.0	21	95	0	77	37	25	4	32	1.77
33548570--33548657	38	2.3	38	100	0	176	14	9	39	36	1.78
33553174--33553224	25	2.0	25	84	0	66	11	29	1	56	1.46

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136