genome.fa.s10.2.7.7.80.10.50.1000.31.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  31  of  136  ( 16211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10019255--10019411	78	2.0	79	96	3	291	45	7	3	43	1.50
10019397--10019446	25	2.0	26	84	11	68	54	2	2	42	1.23
10024017--10024180	31	5.2	31	76	10	127	44	18	7	29	1.76
10024035--10024327	66	4.5	66	90	1	398	44	17	7	30	1.77
10024068--10024312	31	7.6	30	70	17	152	44	17	8	29	1.78
10024467--10024564	40	2.4	41	89	1	153	33	18	19	28	1.95
10024463--10024578	41	2.9	40	73	6	101	35	19	18	26	1.95
10024713--10024969	79	3.3	78	85	6	324	40	16	3	38	1.67
10027888--10027927	19	2.1	19	90	9	64	50	10	10	30	1.69
10028765--10028814	15	3.3	15	86	5	57	48	2	26	24	1.62
10028775--10028814	4	10.8	4	82	15	50	47	0	27	25	1.52
10029360--10029392	17	2.0	17	88	5	50	57	12	0	30	1.35
10039837--10039890	6	9.0	6	100	0	108	50	16	0	33	1.46
10055622--10055667	22	2.1	22	87	0	65	28	17	17	36	1.92
10055951--10055982	5	6.4	5	100	0	64	18	0	21	59	1.38
10057206--10057247	21	2.0	22	85	4	59	33	0	0	66	0.92
10057244--10057284	18	2.3	18	86	0	55	39	4	2	53	1.35
10059845--10059885	21	2.0	21	85	0	55	41	0	21	36	1.54
10061730--10061763	15	2.3	15	100	0	68	38	29	5	26	1.80
10062901--10062926	8	3.2	8	100	0	52	11	0	0	88	0.52
10064026--10064072	17	2.8	18	75	12	55	70	0	0	29	0.88
10064021--10064065	19	2.5	18	86	13	58	71	0	0	28	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10064384--10064426	20	2.2	20	87	4	61	30	0	0	69	0.88
10065443--10065470	1	28.0	1	100	0	56	0	0	0	100	0.00
10075618--10075674	27	2.2	26	87	3	78	59	14	7	19	1.57
10079007--10079653	323	2.0	324	99	0	1287	55	17	3	23	1.57
10084270--10084301	4	8.0	4	92	0	55	71	0	3	25	1.00
10084836--10084896	29	2.1	29	84	9	79	59	1	3	36	1.24
10088708--10088755	24	2.0	24	91	0	78	33	4	10	52	1.55
10090627--10090674	24	2.0	24	91	0	78	33	4	10	52	1.55
10091251--10091283	17	1.9	17	93	0	57	27	0	0	72	0.85
10092065--10092172	25	4.3	25	89	0	108	33	19	25	21	1.97
10092085--10092173	25	3.6	25	92	0	142	32	21	23	22	1.98
10094184--10094226	10	4.6	9	82	8	50	55	4	0	39	1.20
10094184--10094226	19	2.3	19	92	8	70	55	4	0	39	1.20
10094698--10094817	5	21.3	6	66	24	57	47	2	1	48	1.25
10094698--10094813	60	1.9	62	89	3	182	47	2	1	48	1.26
10099257--10099295	9	4.3	9	93	0	69	48	0	0	51	1.00
10118274--10118493	77	2.8	78	74	11	202	31	13	16	38	1.88
10119271--10119303	17	1.9	17	100	0	66	48	0	18	33	1.48
10120167--10120208	19	2.2	19	100	0	84	28	19	14	38	1.90
10125172--10125231	30	2.0	31	86	3	86	40	0	40	20	1.52
10125269--10125374	53	2.0	53	98	0	203	40	0	31	28	1.57
10125389--10125448	29	2.0	31	87	6	88	36	0	45	18	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10129962--10130001	19	2.2	18	86	13	55	40	0	0	60	0.97
10130151--10130229	20	3.9	20	77	1	86	56	13	15	13	1.67
10130133--10130230	40	2.4	41	77	3	99	58	13	16	12	1.64
10130544--10130757	40	5.2	39	69	15	121	50	14	18	16	1.77
10130527--10130717	20	9.4	20	65	15	79	50	14	19	16	1.78
10130527--10130938	163	2.5	158	78	9	427	50	11	19	18	1.77
10131430--10131470	20	2.1	20	86	4	57	56	12	14	17	1.68
10138965--10139007	21	2.0	21	82	8	52	67	4	13	13	1.38
10139608--10139719	59	1.9	58	82	8	138	35	6	8	49	1.60
10147318--10147370	13	4.3	13	79	13	67	43	39	0	16	1.49
10147327--10147375	23	2.1	23	96	0	89	48	36	0	14	1.44
10147467--10147534	9	7.4	9	79	9	66	27	10	19	42	1.83
10147492--10147543	18	2.9	18	85	0	68	28	7	23	40	1.82
10147467--10147543	27	2.8	27	78	5	75	27	9	20	42	1.82
10147492--10147543	9	5.8	9	86	0	50	28	7	23	40	1.82
10147704--10147728	12	2.1	12	100	0	50	16	24	36	24	1.94
10155534--10155702	27	6.3	27	82	2	198	42	22	18	15	1.89
10155545--10155704	80	2.0	80	90	2	250	40	23	20	16	1.91
10155877--10155926	26	2.0	25	96	4	91	12	24	28	36	1.91
10156046--10156125	28	2.9	28	88	1	117	26	26	22	25	2.00
10156273--10156383	19	5.8	19	86	0	168	38	9	14	37	1.78
10156280--10156383	38	2.7	38	96	0	190	39	8	13	38	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10156273--10156409	19	6.9	21	84	4	105	37	8	15	38	1.77
10156512--10156597	45	2.0	44	90	4	138	58	4	22	15	1.55
10157068--10157111	23	1.9	23	86	9	63	29	2	4	63	1.26
10163498--10163711	27	7.9	27	83	2	205	42	20	18	18	1.89
10163536--10163684	81	1.8	81	88	5	230	44	16	19	19	1.87
10163488--10163711	81	2.8	79	77	8	227	43	19	18	18	1.88
10164070--10164125	28	2.0	28	85	0	76	28	21	19	30	1.98
10170665--10170791	62	2.0	61	83	8	159	43	7	21	27	1.80
10170902--10170955	25	2.2	25	89	0	81	27	9	16	46	1.78
10171609--10171647	10	4.1	9	83	9	51	53	2	2	41	1.28
10171985--10172048	32	2.0	32	100	0	128	46	12	12	28	1.78
10176784--10176981	99	2.0	99	97	0	378	34	8	14	41	1.77
10176830--10176984	50	3.1	50	60	15	113	33	6	14	45	1.71
10182383--10182624	112	2.2	112	100	0	484	32	19	11	36	1.88
10201822--10201864	21	2.1	21	86	4	61	39	4	11	44	1.62
10203339--10203406	29	2.3	30	82	2	75	36	16	16	30	1.90
10203542--10203599	31	1.9	31	89	3	91	27	5	15	51	1.64
10203605--10203674	9	7.4	9	74	17	54	62	4	1	31	1.23
10203605--10203665	19	3.2	18	77	9	59	63	4	1	29	1.24
10203636--10203674	19	2.1	19	90	0	60	66	2	0	30	1.05
10203966--10203991	8	3.2	8	100	0	52	61	0	0	38	0.96
10204065--10204108	12	3.8	12	93	3	63	25	11	18	45	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10204617--10204662	24	1.9	24	86	8	67	36	2	10	50	1.50
10210171--10210242	27	2.7	27	72	10	76	33	19	13	33	1.91
10214239--10214513	128	2.1	128	95	1	489	25	24	20	29	1.99
10215744--10215784	7	5.9	7	88	11	66	14	14	0	70	1.16
10215743--10215784	21	2.0	20	95	4	75	16	14	0	69	1.20
10221560--10221590	15	2.1	15	94	5	55	64	0	0	35	0.94
10223215--10223252	17	2.3	17	86	4	51	7	26	5	60	1.46
10223716--10223772	4	14.0	4	89	10	89	77	0	0	22	0.77
10223862--10223912	4	12.8	4	91	8	86	78	0	0	21	0.75
10228862--10229046	51	3.7	50	79	5	185	25	16	25	31	1.97
10232060--10232258	99	2.0	97	98	1	380	34	8	15	42	1.76
10232789--10232821	14	2.4	14	94	0	57	42	0	0	57	0.98
10233602--10233647	21	2.2	21	84	7	58	56	6	4	32	1.45
10248154--10248187	17	1.9	18	88	5	52	61	8	2	26	1.40
10248690--10248725	17	2.1	17	94	0	63	30	22	16	30	1.96
10248839--10248887	21	2.3	20	80	13	55	28	20	26	24	1.99
10249967--10250009	21	2.0	21	82	8	52	32	16	0	51	1.45
10257515--10257556	17	2.4	17	84	11	50	40	7	2	50	1.43
10262779--10262819	18	2.3	18	95	0	73	12	9	14	63	1.52
10264680--10264711	17	1.9	16	93	6	55	43	6	9	40	1.62
10266295--10266328	17	2.0	17	94	0	59	20	29	38	11	1.88
10274337--10274394	16	3.6	16	90	0	89	36	0	34	29	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10274639--10274673	18	2.0	17	88	5	52	54	0	0	45	0.99
10276770--10276822	27	2.0	27	92	0	88	41	22	16	18	1.90
10276985--10277039	26	2.1	26	96	0	101	21	20	21	36	1.95
10279336--10279412	17	4.6	17	71	12	70	41	3	5	49	1.43
10280692--10280731	21	1.9	21	94	0	71	42	15	10	32	1.79
10281240--10281367	68	1.9	68	93	0	220	31	24	9	35	1.87
10292135--10292186	27	1.9	27	96	0	95	50	7	15	26	1.71
10292666--10292832	41	4.1	41	84	3	203	36	22	21	19	1.95
10304510--10304556	17	2.8	17	80	3	60	21	17	12	48	1.79
10320059--10320117	31	1.9	30	82	3	73	25	1	10	62	1.36

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136