genome.fa.s10.2.7.7.80.10.50.1000.105.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  105  of  136  ( 16211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35437599--35437630	15	2.2	15	94	5	57	31	3	0	65	1.08
35442313--35442403	44	2.1	44	95	4	166	12	30	4	52	1.58
35450009--35450052	23	2.0	23	86	13	65	36	22	0	40	1.54
35450712--35450769	28	2.1	28	90	0	89	43	6	15	34	1.74
35458732--35458763	13	2.5	13	94	0	55	50	12	0	37	1.41
35470790--35470929	72	1.9	72	89	0	217	49	7	9	34	1.62
35478899--35478961	30	2.1	30	91	2	101	36	15	25	22	1.94
35489106--35489171	26	2.5	26	85	2	78	36	22	13	27	1.92
35498984--35499020	2	18.5	2	100	0	74	48	0	0	51	1.00
35505672--35505985	27	11.7	27	84	4	377	21	19	19	39	1.93
35514111--35514226	28	4.1	28	86	0	151	30	25	24	19	1.98
35514557--35514995	27	16.3	27	83	2	470	21	17	18	41	1.91
35514558--35514995	54	8.1	54	85	2	522	21	18	18	41	1.91
35514558--35514995	81	5.4	81	85	2	576	21	18	18	41	1.91
35518813--35518854	21	1.9	23	85	9	61	7	9	23	59	1.53
35525447--35525639	51	3.8	52	78	7	200	25	19	25	29	1.98
35543406--35543482	14	5.0	15	72	20	61	44	15	7	32	1.75
35543422--35543461	20	2.0	20	90	0	62	50	12	10	27	1.72
35543410--35543476	34	1.9	35	93	3	118	47	13	7	31	1.70
35543445--35543484	14	2.9	14	88	0	62	45	17	5	32	1.70
35556925--35557122	98	2.0	99	99	1	389	32	12	16	38	1.86
35558160--35558659	27	18.7	27	82	4	521	20	16	20	42	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35558169--35558641	81	5.9	81	84	6	588	20	17	19	42	1.89
35559925--35559955	11	2.8	11	90	0	53	35	32	0	32	1.58
35566491--35566541	25	2.0	25	81	7	59	9	35	0	54	1.33
35568336--35568387	22	2.4	21	75	12	52	15	5	17	61	1.52
35571321--35571593	139	2.0	139	97	0	510	28	11	27	32	1.91
35575861--35575917	25	2.3	25	93	6	98	28	31	12	28	1.93
35577878--35577974	20	4.9	20	70	18	69	13	31	17	37	1.89
35579895--35579931	11	3.5	11	85	14	60	64	0	0	35	0.94
35580590--35580658	27	2.6	27	90	4	104	40	7	1	50	1.39
35580722--35580801	27	3.0	27	92	0	124	27	27	30	15	1.96
35583476--35583513	18	2.1	18	90	0	58	15	44	5	34	1.69
35583479--35583520	18	2.3	18	83	0	57	21	47	2	28	1.63
35584087--35584136	3	16.7	3	100	0	100	66	0	0	34	0.92
35584422--35584501	27	3.0	27	94	0	133	13	30	28	27	1.94
35584528--35584564	18	2.1	17	90	5	56	0	2	8	89	0.58
35584564--35584634	27	2.5	28	86	4	99	46	1	8	43	1.42
35585259--35585283	10	2.5	10	100	0	50	72	0	0	28	0.86
35585556--35585587	13	2.5	13	94	0	55	18	0	0	81	0.70
35586033--35586078	17	2.7	17	79	0	56	52	2	0	45	1.13
35586113--35586160	10	4.5	10	77	12	51	29	6	0	64	1.18
35586112--35586167	21	2.7	21	81	10	62	32	5	0	62	1.18
35586114--35586161	22	2.2	22	85	7	62	27	6	0	66	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35594348--35594389	20	2.1	20	86	0	57	47	2	7	42	1.43
35597060--35597092	17	1.9	17	93	0	57	75	6	6	12	1.16
35597173--35597206	4	8.5	4	93	0	59	73	0	2	23	0.97
35600847--35600896	26	1.9	26	100	0	100	28	34	24	14	1.93
35600808--35600968	67	2.4	67	90	1	241	30	27	18	23	1.98
35602029--35602061	11	2.8	12	90	9	50	36	15	12	36	1.84
35606292--35606521	43	5.5	41	77	11	198	33	26	17	22	1.96
35606292--35606518	42	5.4	42	78	10	221	33	25	18	22	1.96
35606283--35606521	85	2.8	85	89	0	327	32	25	18	23	1.97
35606497--35606547	26	2.0	26	100	0	102	27	33	23	15	1.95
35606460--35606619	67	2.4	67	91	3	250	31	26	18	23	1.97
35607635--35607667	11	2.8	12	90	9	50	36	15	12	36	1.84
35610967--35610999	17	1.9	17	100	0	66	66	9	6	18	1.40
35615033--35615082	24	2.1	24	92	0	82	30	4	12	54	1.55
35620000--35620052	27	2.0	27	81	7	63	22	22	24	30	1.99
35620641--35620703	25	2.5	25	79	5	65	17	23	22	36	1.95
35620645--35620775	50	2.6	50	83	4	140	22	23	21	32	1.98
35620670--35620775	25	4.2	25	78	2	106	23	23	21	31	1.99
35620695--35620794	50	2.0	50	84	3	130	26	25	17	32	1.97
35628511--35628574	32	2.1	29	85	8	83	56	7	4	31	1.49
35628664--35628720	23	2.5	23	88	0	78	57	15	7	19	1.60
35628903--35628966	3	21.3	3	93	6	112	31	32	0	35	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35635589--35635626	18	2.1	18	100	0	76	31	18	10	39	1.85
35636119--35636165	17	2.8	17	90	0	67	36	27	14	21	1.93
35640287--35640337	22	2.3	23	83	10	61	50	9	5	33	1.59
35640296--35640345	22	2.3	21	80	10	55	50	16	6	28	1.68
35641922--35642149	50	4.4	50	85	3	258	21	28	21	27	1.99
35644704--35644807	28	3.8	28	66	8	79	50	22	1	25	1.60
35644919--35644955	19	1.9	19	94	0	65	45	16	2	35	1.61
35646471--35646507	19	1.9	19	88	0	56	59	2	2	35	1.26
35651289--35651354	30	2.2	30	81	2	89	37	4	10	46	1.59
35653014--35653060	18	2.6	19	78	18	55	51	4	2	42	1.33
35653011--35653050	19	2.1	19	90	9	64	55	5	0	40	1.22
35658087--35658125	16	2.4	16	95	4	69	30	41	15	12	1.85
35661442--35661976	267	2.0	268	99	0	1063	30	16	8	44	1.77
35662438--35662505	9	7.3	9	70	18	50	22	2	1	73	1.05
35663486--35663540	25	2.3	24	81	9	67	47	1	1	49	1.23
35663763--35663793	9	3.4	9	90	0	53	25	12	22	38	1.90
35663845--35663881	9	4.1	9	92	0	65	45	13	10	29	1.77
35665374--35665508	67	2.0	68	95	4	247	26	22	17	33	1.96
35674866--35674927	28	2.2	30	80	16	78	61	1	3	33	1.22
35675126--35675156	9	3.4	9	90	0	53	25	12	22	38	1.90
35675210--35675246	9	4.1	9	92	0	65	45	13	10	29	1.77
35698631--35698796	44	3.8	43	79	6	163	31	16	21	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35710083--35710251	86	2.0	85	85	1	230	26	26	18	29	1.98
35710155--35710355	57	3.5	57	84	0	258	26	24	14	33	1.94
35710128--35710355	29	8.0	29	71	6	142	25	24	15	33	1.95
35710179--35710342	28	5.8	28	70	4	123	25	24	15	34	1.94
35713144--35713196	5	10.6	5	84	15	58	79	3	16	0	0.88
35713219--35713253	12	3.0	11	91	8	52	77	0	22	0	0.78
35721026--35721064	20	2.0	20	94	0	69	43	15	12	28	1.83
35723055--35723105	6	8.3	6	81	12	50	58	0	0	41	0.98
35723046--35723109	25	2.6	24	83	11	76	60	0	0	39	0.97
35723049--35723112	31	2.1	30	97	2	119	64	0	0	35	0.94
35729543--35729618	31	2.5	31	80	0	89	39	7	26	26	1.83
35729808--35730168	183	2.0	185	84	1	474	23	11	25	39	1.88
35758816--35758883	27	2.5	27	87	0	91	32	23	17	26	1.97
35766943--35767071	66	2.0	66	95	0	231	20	12	24	43	1.86
35766943--35767087	66	2.2	66	91	3	229	20	12	23	44	1.85
35768543--35768861	159	2.0	159	97	0	602	31	15	25	28	1.96
35768840--35768873	11	2.8	13	91	8	54	44	11	8	35	1.72
35769706--35769908	103	2.0	103	96	0	370	21	19	26	32	1.97
35769811--35770062	76	3.3	76	89	0	405	20	18	26	34	1.95
35769846--35770060	43	5.5	41	67	20	156	21	17	26	34	1.95
35783635--35783701	29	2.3	29	92	0	116	53	2	8	34	1.47
35783795--35783847	21	2.5	21	93	0	88	30	37	9	22	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35790089--35790301	68	3.2	65	77	14	216	35	15	23	25	1.94
35790091--35790369	68	4.1	67	76	13	178	37	14	21	26	1.92
35793020--35793055	14	2.8	13	88	12	56	69	0	19	11	1.18
35795287--35795401	43	2.7	43	81	10	128	20	18	27	33	1.95
35795586--35795642	28	2.0	29	86	3	80	29	5	22	42	1.76
35798755--35798894	40	3.5	40	75	10	137	27	17	23	32	1.96
35802422--35802473	25	2.1	26	85	7	72	19	25	21	34	1.96
35807019--35807218	98	2.0	99	99	0	393	57	4	8	30	1.46
35809387--35809444	29	2.2	26	82	17	75	44	1	1	51	1.21
35809900--35809929	14	2.2	13	94	5	51	53	0	0	46	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136