genome.fa.s10.2.7.7.80.10.50.1000.77.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  77  of  136  ( 16211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25149404--25149838	81	5.4	80	79	6	398	22	16	19	41	1.90
25150882--25150949	36	1.9	36	82	8	86	19	39	2	38	1.67
25154458--25154487	15	1.9	16	93	6	53	33	0	0	66	0.92
25155240--25155275	17	2.1	17	89	0	54	38	11	2	47	1.54
25157684--25157859	50	3.5	50	83	0	217	26	23	30	19	1.98
25158123--25158171	20	2.5	20	81	15	66	57	6	24	12	1.58
25158388--25158433	24	1.9	24	100	0	92	23	13	28	34	1.92
25165410--25165588	50	3.5	50	86	4	205	25	18	30	25	1.98
25165896--25165944	20	2.5	20	78	15	57	55	6	26	12	1.60
25168552--25168591	21	1.9	21	89	0	62	55	0	7	37	1.29
25172887--25172930	22	2.0	21	86	4	61	18	6	0	75	1.02
25172897--25172930	14	2.3	15	95	5	61	14	8	0	76	1.01
25174432--25174466	9	4.1	8	86	13	52	62	11	14	11	1.54
25189992--25190016	11	2.3	11	100	0	50	48	16	0	36	1.46
25192536--25192563	2	14.0	2	100	0	56	0	0	50	50	1.00
25197898--25197971	37	2.0	37	94	0	130	44	12	18	24	1.84
25212185--25212453	27	10.0	26	75	10	186	46	19	11	23	1.82
25212185--25212453	53	5.0	52	76	9	213	46	19	11	23	1.82
25212193--25212428	80	2.9	80	83	8	291	45	19	11	23	1.82
25212649--25212723	26	2.9	26	87	0	105	14	20	22	42	1.88
25212836--25212968	28	4.8	28	78	3	142	25	21	23	29	1.99
25212836--25212968	56	2.4	56	88	0	194	25	21	23	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25219459--25219843	27	14.3	26	81	9	330	44	18	15	21	1.86
25219438--25219843	54	7.5	54	81	6	398	44	19	14	21	1.86
25219459--25219843	81	4.8	81	80	7	417	44	18	15	21	1.86
25220036--25220159	26	4.8	26	83	2	151	16	17	22	42	1.89
25220271--25220381	28	4.0	28	86	8	147	23	22	23	30	1.99
25223646--25223674	14	2.1	14	100	0	58	20	6	20	51	1.70
25229709--25229824	46	2.6	45	91	6	184	32	16	23	27	1.96
25237104--25237261	29	5.4	29	83	6	196	41	10	24	24	1.85
25237185--25237291	29	3.7	28	81	12	94	41	11	24	23	1.87
25237104--25237290	87	2.1	88	82	9	224	40	11	24	23	1.87
25237105--25237290	58	3.2	57	81	7	189	40	11	24	23	1.87
25237250--25237382	29	4.6	29	82	5	135	37	12	27	22	1.90
25243236--25243301	29	2.3	29	91	0	114	37	12	25	24	1.90
25243287--25243522	29	8.1	29	73	8	156	38	15	24	22	1.93
25243258--25243451	87	2.2	87	84	4	239	39	13	24	22	1.90
25252316--25252438	28	4.3	29	78	5	99	25	16	20	38	1.92
25255628--25255707	20	4.0	20	69	9	63	18	28	12	40	1.87
25255642--25255787	41	3.6	41	87	0	193	20	30	13	35	1.91
25260161--25260220	30	2.1	27	81	9	66	23	6	3	66	1.30
25268233--25268292	22	2.7	22	92	0	93	30	21	16	31	1.96
25268232--25268303	22	3.3	22	86	3	83	31	23	15	29	1.95
25272343--25272404	27	2.3	27	97	0	115	41	22	19	16	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25272343--25272434	27	3.4	26	87	3	85	40	20	17	21	1.92
25275172--25275252	41	2.0	41	85	4	110	20	29	14	34	1.93
25292762--25292807	13	3.2	15	76	17	53	6	26	0	67	1.15
25292803--25292847	19	2.3	20	85	11	58	6	17	2	73	1.15
25292820--25292871	14	3.8	13	75	14	52	3	15	3	76	1.07
25296641--25296690	11	4.8	11	79	18	54	28	14	28	30	1.95
25296651--25296709	19	3.5	19	66	33	62	25	16	27	30	1.97
25296641--25296712	30	2.4	30	100	0	144	27	15	26	30	1.96
25298688--25298836	28	5.4	28	80	2	167	30	20	23	25	1.99
25298694--25298836	56	2.6	56	87	2	216	30	20	23	25	1.99
25298942--25299044	26	4.0	26	89	0	161	40	23	21	14	1.90
25298945--25299070	52	2.4	52	85	2	137	41	22	21	15	1.90
25299223--25299672	27	16.7	27	79	7	407	21	15	20	43	1.88
25299222--25299672	54	8.4	54	78	4	455	21	15	19	43	1.88
25299803--25299887	42	2.0	42	95	0	152	17	16	29	36	1.92
25303357--25303381	5	5.0	5	100	0	50	20	0	0	80	0.72
25306381--25306470	29	3.0	30	80	9	87	33	12	16	37	1.86
25306397--25306470	30	2.5	31	80	6	89	33	10	16	39	1.83
25307346--25307386	21	1.9	22	85	5	57	43	7	2	46	1.44
25327260--25327324	28	2.3	30	82	15	84	47	3	3	46	1.33
25336062--25336146	40	2.1	40	97	0	161	27	14	31	27	1.94
25338214--25338244	14	2.2	14	100	0	62	19	6	12	61	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25357374--25357423	11	4.5	11	73	16	50	14	0	46	40	1.44
25357344--25357424	22	3.7	22	76	12	85	12	1	48	38	1.49
25357369--25357433	22	2.9	22	84	11	62	15	1	44	38	1.56
25369301--25369332	16	1.9	17	93	6	57	53	6	0	40	1.26
25371477--25371531	19	2.9	19	88	0	74	34	36	7	21	1.81
25378399--25378470	35	2.1	35	100	0	144	36	11	15	37	1.83
25381133--25381263	27	4.9	27	83	5	167	23	15	19	41	1.90
25381133--25381263	53	2.4	54	84	3	176	23	15	19	41	1.90
25382762--25382815	25	2.2	25	82	0	63	16	42	12	27	1.85
25384758--25385037	114	2.5	113	85	2	373	35	16	16	31	1.91
25388514--25388576	30	2.0	31	84	9	83	46	4	7	41	1.54
25389912--25390027	44	2.7	44	86	1	162	31	25	14	28	1.95
25390160--25390354	45	4.1	48	65	18	113	30	19	17	32	1.95
25390139--25390453	139	2.3	138	90	0	486	29	20	18	31	1.96
25390379--25390723	44	7.8	44	76	3	282	29	23	17	30	1.97
25390385--25390719	133	2.5	131	80	3	348	29	23	17	30	1.97
25390848--25390963	45	2.7	44	80	6	112	27	24	18	29	1.98
25390889--25391180	103	2.8	102	79	5	311	31	23	16	28	1.96
25391140--25391660	44	11.6	44	70	14	253	29	22	18	30	1.97
25391583--25391692	45	2.4	45	80	3	105	30	25	12	30	1.93
25392167--25392224	24	2.4	24	82	5	73	31	20	12	36	1.89
25393280--25393323	7	5.7	7	80	19	52	0	18	0	81	0.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25393275--25393323	16	3.1	16	96	0	89	0	22	0	77	0.77
25393988--25394028	21	1.9	21	85	5	55	41	7	4	46	1.53
25394932--25394994	30	2.0	31	84	9	83	46	4	7	41	1.54
25397139--25397190	21	2.6	20	93	6	88	36	11	15	36	1.84
25397532--25397573	3	14.0	3	94	0	75	33	2	0	64	1.07
25398424--25398456	12	2.8	12	95	0	57	9	21	36	33	1.85
25398543--25398852	114	2.7	115	84	5	400	25	23	25	25	2.00
25398648--25399037	185	2.1	186	87	2	568	26	24	22	26	2.00
25398831--25399414	115	5.1	114	85	4	698	25	22	23	28	1.99
25400487--25401193	365	1.9	366	92	0	1182	30	14	19	35	1.92
25401864--25401901	18	2.1	18	95	0	67	23	10	15	50	1.75
25402946--25402989	23	1.9	23	95	0	79	43	18	0	38	1.50
25403097--25403189	25	3.6	25	80	5	105	48	21	1	29	1.57
25403097--25403184	9	10.2	9	75	9	85	48	21	1	28	1.57
25406394--25406467	21	3.5	21	86	0	103	32	17	44	5	1.71
25406394--25406479	21	4.1	21	86	0	100	32	17	45	4	1.69
25406888--25407047	43	3.8	42	87	6	216	27	20	20	31	1.97
25408262--25408298	13	2.7	14	80	19	51	62	8	16	13	1.54
25409166--25409207	20	2.1	20	86	8	59	16	4	9	69	1.33
25422646--25422705	24	2.5	24	73	10	59	50	26	8	15	1.72
25424749--25424804	19	2.9	19	76	10	60	39	21	17	21	1.93
25432539--25432563	13	1.9	13	100	0	50	36	24	16	24	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25434114--25434139	12	2.2	12	100	0	52	0	42	0	57	0.98
25434814--25435036	27	8.3	27	87	3	306	43	19	19	17	1.88
25437196--25437248	13	4.1	13	85	0	79	35	28	7	28	1.84
25442539--25442974	40	10.9	40	80	1	442	14	14	26	43	1.85
25443585--25443683	30	3.3	30	84	10	132	22	25	8	44	1.80
25444671--25444730	10	5.9	10	76	16	52	76	0	21	1	0.87
25444675--25444737	21	2.9	22	77	17	69	76	0	20	3	0.93
25444671--25444725	17	3.2	17	80	14	60	78	0	20	1	0.85
25444678--25444734	11	5.2	11	77	14	55	77	0	21	1	0.86
25444671--25444724	27	2.0	27	82	7	65	79	0	18	1	0.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136