genome.fa.s10.2.7.7.80.10.50.1000.118.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  118  of  136  ( 16211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40088581--40088631	21	2.5	20	80	6	57	31	15	27	25	1.96
40089291--40089319	10	2.9	10	100	0	58	41	10	17	31	1.83
40092620--40092825	40	5.1	40	87	2	288	33	17	28	20	1.95
40092726--40092822	19	4.8	20	64	13	56	29	15	31	22	1.95
40108706--40108822	38	3.1	38	77	6	112	37	25	17	18	1.93
40115608--40115761	38	4.1	37	83	3	155	39	26	16	16	1.90
40118943--40118972	10	3.0	10	95	0	51	70	3	16	10	1.29
40124717--40124770	3	17.0	3	77	11	54	29	1	7	61	1.34
40124903--40124936	18	1.9	18	88	5	52	35	8	0	55	1.31
40136468--40136494	13	2.1	13	100	0	54	44	18	22	14	1.86
40140560--40140609	22	2.3	22	78	0	55	48	22	10	20	1.79
40140773--40140846	37	2.0	38	84	7	98	33	10	22	32	1.89
40143716--40143796	25	3.3	24	80	11	92	20	24	19	34	1.96
40143715--40143819	25	4.2	24	77	12	88	22	23	20	33	1.97
40143713--40143823	50	2.2	49	82	7	143	24	23	18	33	1.97
40158032--40158157	41	3.3	41	63	28	114	22	33	30	13	1.92
40158038--40158156	36	3.3	36	69	28	117	22	32	30	14	1.94
40158034--40158192	72	2.2	72	100	0	318	22	33	31	12	1.91
40158074--40158192	36	3.3	36	69	28	117	22	32	33	10	1.89
40158199--40158254	22	2.5	23	82	2	69	51	1	1	44	1.22
40158230--40158269	16	2.5	16	91	0	62	47	2	7	42	1.45
40160164--40160221	29	2.0	30	83	10	75	31	12	13	43	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40160897--40160942	12	3.9	12	77	13	51	30	0	2	67	1.03
40160898--40160940	23	1.9	23	90	4	70	30	0	2	67	1.03
40161899--40162124	85	2.7	84	89	3	319	30	21	23	24	1.98
40161899--40162125	42	5.3	42	90	3	321	30	21	22	25	1.99
40168064--40168116	22	2.5	21	81	3	61	41	1	18	37	1.62
40168112--40168157	7	6.6	7	78	16	51	28	0	10	60	1.30
40168112--40168157	15	3.3	15	79	17	62	28	0	10	60	1.30
40168028--40168441	96	4.3	96	98	0	792	35	1	14	48	1.51
40168160--40168212	22	2.5	21	81	3	61	41	1	18	37	1.62
40168208--40168253	7	6.6	7	78	16	51	28	0	10	60	1.30
40168208--40168253	15	3.3	15	79	17	62	28	0	10	60	1.30
40168256--40168308	22	2.5	21	81	3	61	41	1	18	37	1.62
40168304--40168349	7	6.6	7	78	16	51	28	0	10	60	1.30
40168304--40168349	15	3.3	15	79	17	62	28	0	10	60	1.30
40168563--40168601	20	2.0	20	84	0	51	30	0	2	66	1.05
40169067--40169170	33	3.2	33	64	8	95	44	4	9	41	1.58
40170842--40170866	8	3.1	8	100	0	50	24	0	0	76	0.80
40170865--40172014	227	5.1	227	92	2	1767	28	22	18	30	1.97
40170865--40172014	340	3.4	339	86	3	1603	28	22	18	30	1.97
40182125--40182163	20	2.0	20	90	5	62	30	23	2	43	1.67
40182193--40182232	19	2.0	20	85	4	55	27	0	5	67	1.11
40186961--40187021	8	7.1	8	77	17	61	81	3	3	11	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40186961--40187035	13	5.2	15	84	10	61	80	4	2	13	0.97
40186983--40187038	13	4.1	14	88	9	73	78	7	1	12	1.02
40187070--40187110	6	6.7	6	91	2	64	82	0	17	0	0.66
40187238--40187273	16	2.2	16	95	0	63	19	13	22	44	1.86
40189271--40189674	44	9.2	44	90	1	632	26	22	24	26	2.00
40191131--40191169	20	2.0	20	90	5	62	30	23	2	43	1.67
40191317--40191372	20	2.9	18	78	19	53	33	5	1	58	1.31
40199355--40199396	20	2.1	21	86	8	61	35	9	4	50	1.56
40205625--40205666	20	2.1	21	86	8	61	35	9	4	50	1.56
40215472--40215533	26	2.4	26	81	5	72	37	12	14	35	1.85
40232235--40232262	14	2.0	14	100	0	56	42	14	0	42	1.45
40249505--40249673	43	3.9	44	77	7	159	23	15	27	32	1.96
40257222--40257266	21	2.3	19	80	7	54	31	0	17	51	1.46
40256718--40257630	457	2.0	460	94	1	1625	35	5	21	37	1.77
40264552--40264587	6	5.8	6	90	3	54	52	2	27	16	1.57
40271567--40271704	52	2.6	53	87	2	188	26	25	10	37	1.89
40271567--40271704	26	5.2	26	86	2	170	26	25	10	37	1.89
40286142--40286178	18	2.0	19	85	15	51	56	8	0	35	1.29
40286994--40287067	20	3.6	20	80	7	94	25	20	22	31	1.98
40287774--40287873	50	2.0	50	86	1	139	47	12	9	32	1.72
40291498--40291545	19	2.5	19	83	10	53	25	2	0	72	0.95
40293569--40293595	14	1.9	14	100	0	54	0	0	14	85	0.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40296445--40296480	18	1.9	19	88	5	56	5	19	2	72	1.17
40300905--40301091	51	3.7	50	73	5	171	26	16	25	32	1.96
40301102--40301190	45	2.0	45	93	0	151	25	17	23	32	1.97
40308553--40308648	50	1.9	50	91	0	156	26	4	22	46	1.70
40317815--40317875	32	1.9	32	86	0	86	26	26	26	21	1.99
40319326--40319538	105	2.0	105	96	0	390	39	21	15	23	1.91
40332602--40332630	11	2.5	12	94	5	51	79	0	0	20	0.74
40335021--40335110	46	2.0	46	90	0	144	22	5	12	60	1.53
40342797--40342885	24	3.7	24	74	12	76	24	28	16	30	1.97
40342868--40342921	25	2.2	24	77	6	56	22	29	16	31	1.96
40342987--40343061	25	3.0	25	82	5	89	22	26	20	30	1.98
40343015--40343087	25	2.8	25	84	10	85	21	23	20	34	1.97
40345009--40345138	43	3.0	43	78	12	131	32	28	16	22	1.96
40348181--40348736	41	13.9	41	74	10	283	21	25	25	28	1.99
40348501--40348736	123	1.9	122	86	0	337	18	24	25	30	1.98
40348762--40348878	42	2.8	41	84	2	144	23	20	23	31	1.98
40349166--40349199	15	2.2	16	94	5	61	20	0	32	47	1.51
40349957--40349999	22	1.9	23	86	13	63	69	0	11	18	1.17
40350521--40350563	22	1.9	23	86	13	63	69	0	11	18	1.17
40359424--40359552	66	2.0	66	87	0	186	42	17	24	15	1.88
40359908--40360039	43	3.1	43	86	1	185	31	18	25	25	1.98
40360130--40360172	21	2.0	22	90	4	70	39	25	20	13	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40363079--40363179	25	4.0	25	77	2	105	19	26	20	32	1.97
40366754--40366796	18	2.4	18	80	3	52	32	0	13	53	1.41
40369498--40369584	39	2.2	39	80	8	95	34	21	26	17	1.95
40369630--40369908	41	6.8	40	73	4	155	16	23	24	36	1.94
40369630--40369949	82	3.9	81	80	3	309	16	24	23	36	1.94
40369805--40369949	41	3.5	40	74	7	114	16	25	20	37	1.93
40372767--40372793	11	2.5	11	100	0	54	25	18	0	55	1.43
40374529--40374579	21	2.4	22	80	9	70	47	0	1	50	1.12
40374667--40374707	13	2.8	15	85	14	59	46	19	0	34	1.50
40374799--40375041	9	28.3	9	84	11	314	47	23	0	29	1.52
40374820--40375041	34	6.5	34	99	0	435	46	23	0	29	1.52
40381358--40381403	21	2.2	21	88	0	65	39	19	39	2	1.64
40381311--40381484	87	2.0	87	85	5	239	38	17	30	13	1.88
40381837--40382117	43	6.5	43	82	1	303	25	21	23	29	1.99
40382261--40382306	22	2.1	21	84	4	56	41	30	13	15	1.85
40390312--40390351	20	2.0	20	90	0	62	47	12	12	27	1.77
40390335--40390374	14	2.9	14	84	0	53	42	17	7	32	1.77
40390300--40390366	34	1.9	35	84	3	91	44	11	10	32	1.75
40390770--40390808	14	2.7	15	84	4	53	35	5	2	56	1.35
40394169--40394224	24	2.4	23	79	5	58	51	10	5	32	1.59
40394175--40394224	24	2.1	24	84	0	64	52	12	4	32	1.57
40394616--40394655	21	1.9	21	85	10	55	2	27	7	62	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40395575--40395633	23	2.6	22	72	5	55	6	27	1	64	1.28
40399581--40399633	17	3.4	17	65	24	53	64	15	1	18	1.38
40399582--40399639	29	2.0	29	100	0	116	58	17	3	20	1.53
40417737--40417793	23	2.5	23	97	0	105	10	17	3	68	1.33
40418604--40418730	27	4.7	27	80	1	119	32	14	25	28	1.94
40418870--40418950	27	2.9	28	83	5	94	38	7	27	27	1.83
40421492--40421545	27	2.0	27	88	0	81	16	35	22	25	1.95
40421496--40421553	27	2.1	27	83	0	71	17	34	20	27	1.95
40421716--40421832	55	2.1	54	82	4	146	50	16	12	20	1.77
40421867--40422024	54	2.8	59	76	13	175	48	17	14	19	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136