genome.fa.s10.2.7.7.80.10.50.1000.39.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  39  of  136  ( 16211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12725334--12725550	116	1.9	112	90	3	344	35	2	19	42	1.64
12725633--12725720	9	10.2	9	69	12	60	32	4	19	43	1.71
12725397--12725812	199	2.0	201	93	4	710	36	4	16	42	1.68
12725794--12725937	9	15.7	9	73	13	89	34	0	19	46	1.50
12725595--12725937	110	3.1	112	84	8	422	35	2	17	44	1.64
12725673--12725937	56	4.8	56	80	10	310	35	1	17	45	1.59
12725871--12726013	76	1.9	75	89	2	225	30	1	20	48	1.58
12726042--12726141	27	3.6	27	72	16	78	32	0	18	50	1.47
12725794--12726141	126	2.7	127	85	8	458	33	0	19	47	1.54
12726108--12726144	9	4.2	9	89	3	58	32	0	21	45	1.52
12726873--12726897	13	1.9	13	100	0	50	52	24	8	16	1.70
12728241--12728280	19	2.0	20	85	4	55	27	2	45	25	1.66
12729085--12729140	28	2.0	28	82	3	67	51	26	0	21	1.48
12729195--12729232	20	1.9	20	88	0	58	47	31	2	18	1.62
12729607--12729656	7	7.4	7	86	8	50	34	44	0	22	1.53
12729607--12729643	19	1.9	19	88	0	56	37	43	0	18	1.51
12729607--12729656	14	3.7	14	84	10	59	34	44	0	22	1.53
12729836--12729891	28	2.0	28	82	3	67	51	26	0	21	1.48
12729946--12729983	20	1.9	20	88	0	58	47	31	2	18	1.62
12730627--12730863	41	5.8	40	89	2	330	27	30	21	21	1.98
12735868--12735947	19	3.9	19	77	15	88	51	13	1	33	1.50
12735865--12735952	43	2.0	43	97	0	167	52	12	2	32	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12741247--12741369	40	3.1	40	85	2	131	17	29	21	31	1.96
12741265--12741375	20	5.6	20	75	16	104	18	29	21	30	1.97
12741278--12741393	60	1.9	59	81	8	137	17	30	20	31	1.95
12747341--12747463	40	3.1	40	83	2	113	17	30	22	30	1.96
12747358--12747487	20	6.6	20	72	12	99	16	30	21	30	1.96
12750474--12750522	23	2.1	23	85	7	64	55	10	8	26	1.61
12751231--12751303	32	2.3	32	82	0	92	30	35	20	13	1.91
12764764--12764820	28	2.0	28	83	6	71	54	7	1	36	1.38
12766894--12766919	6	4.3	6	100	0	52	61	0	0	38	0.96
12770606--12770642	9	4.1	9	92	0	65	29	10	13	45	1.77
12782367--12782403	17	2.2	17	100	0	74	18	16	10	54	1.71
12782471--12782510	19	2.1	19	100	0	80	45	10	15	30	1.78
12792427--12792461	16	2.2	16	100	0	70	42	5	5	45	1.51
12794894--12794960	33	2.0	33	100	0	134	37	14	11	35	1.84
12804680--12804729	17	2.8	18	72	22	52	54	6	4	36	1.44
12829085--12829149	6	9.7	7	79	20	52	66	3	3	27	1.22
12829096--12829148	3	17.7	3	88	0	79	66	3	1	28	1.20
12829096--12829148	15	3.5	15	94	0	88	66	3	1	28	1.20
12830899--12831526	310	2.0	311	99	0	1240	35	17	13	33	1.89
12835033--12835096	13	4.9	13	84	0	92	31	7	25	35	1.84
12836332--12836395	19	3.1	19	76	23	74	51	21	25	1	1.57
12836345--12836404	25	2.4	25	97	0	111	46	26	25	1	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12836749--12836791	19	2.3	18	84	11	52	62	6	9	20	1.48
12840323--12840390	35	2.0	35	82	8	86	30	20	26	22	1.98
12842920--12842966	22	2.1	22	85	14	62	57	2	2	38	1.23
12844740--12844806	24	2.8	24	86	0	80	46	0	35	17	1.49
12844864--12845091	89	2.6	86	79	8	278	39	20	10	30	1.86
12859434--12859470	12	2.8	14	84	12	51	37	16	0	45	1.47
12867818--12868114	138	2.2	138	84	1	371	22	18	27	31	1.97
12873819--12874016	101	2.0	101	98	0	387	31	15	5	48	1.66
12874111--12874140	14	2.1	14	100	0	60	20	26	30	23	1.98
12896313--12896369	21	2.7	21	86	0	78	14	12	31	42	1.82
12916735--12916915	50	3.6	50	81	5	172	27	22	28	22	1.99
12924654--12924894	43	5.7	42	82	5	270	31	30	16	21	1.96
12924652--12924922	43	6.4	43	81	4	165	32	29	16	21	1.95
12934235--12934266	9	3.6	9	95	0	55	34	0	18	46	1.49
12934319--12934344	13	2.0	13	100	0	52	38	7	0	53	1.30
12936486--12936540	26	2.1	26	86	0	74	38	20	20	21	1.94
12936681--12936904	27	8.3	27	85	5	258	19	16	20	43	1.88
12936682--12936893	54	3.9	55	85	6	290	19	16	20	42	1.89
12936665--12936905	80	3.0	78	81	5	286	19	16	21	42	1.89
12936682--12936904	107	2.1	108	89	5	337	19	16	20	43	1.88
12944166--12944203	16	2.4	17	82	13	53	47	18	5	28	1.70
12944254--12944474	81	2.7	82	87	2	331	20	15	21	42	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12944251--12944474	27	8.3	27	83	1	243	20	16	21	42	1.89
12954026--12954069	19	2.3	19	84	0	61	29	22	29	18	1.97
12957440--12957500	28	2.2	28	80	8	72	50	3	8	37	1.48
12959794--12959826	17	1.9	18	88	11	52	42	12	0	45	1.41
12973360--12973396	9	3.9	9	86	13	56	18	0	21	59	1.38
12973353--12973396	20	2.2	20	91	0	70	20	0	20	59	1.39
12973354--12973397	11	4.2	11	85	11	56	20	0	18	61	1.35
12973508--12973590	24	3.6	23	72	16	73	38	13	14	33	1.85
12980135--12980251	50	2.3	50	80	2	128	28	24	25	21	1.99
12984820--12985592	386	2.0	387	99	0	1539	34	18	8	38	1.81
12985817--12985855	12	3.2	12	85	0	51	20	23	5	51	1.67
12986104--12986296	50	3.7	50	79	4	179	24	28	20	26	1.99
12986887--12987026	69	2.0	69	97	0	262	38	21	5	34	1.77
12991178--12991299	50	2.4	49	82	8	140	24	23	28	22	1.99
12993303--12993367	11	6.2	11	85	8	75	21	0	18	60	1.37
13003362--13003405	22	2.0	22	82	8	54	20	2	4	72	1.13
13004193--13004231	19	2.0	20	85	5	53	23	38	23	15	1.92
13004671--13004749	38	2.1	38	81	9	90	18	13	36	30	1.90
13022794--13022908	39	2.9	39	94	2	196	30	3	20	45	1.68
13025383--13025412	12	2.5	12	94	0	51	36	30	0	33	1.58
13029517--13029886	182	2.0	182	95	0	659	30	20	12	36	1.90
13038938--13038967	16	1.9	16	93	6	53	73	3	10	13	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13043956--13044013	29	2.0	29	96	0	107	24	13	12	50	1.76
13058524--13058610	27	3.2	27	85	3	86	19	18	20	41	1.91
13058535--13058892	27	13.3	27	83	6	415	18	20	18	42	1.89
13065080--13065124	21	2.1	21	83	0	54	44	8	2	44	1.47
13065727--13065821	28	3.4	28	85	0	91	34	23	20	22	1.96
13065930--13065994	26	2.5	26	87	0	94	36	18	24	20	1.94
13066178--13066617	27	16.4	27	86	5	536	18	19	18	43	1.89
13069704--13069779	29	2.6	29	85	0	89	40	18	13	27	1.88
13073960--13074001	15	2.7	15	85	3	57	35	11	16	35	1.86
13073946--13073993	16	3.1	15	79	8	51	33	10	16	39	1.83
13075426--13075450	10	2.5	10	100	0	50	68	8	0	24	1.16
13076403--13076444	21	2.0	21	90	0	66	14	23	19	42	1.87
13076423--13076520	40	2.5	40	81	8	119	12	18	26	42	1.85
13079113--13079150	17	2.2	19	86	13	55	42	13	0	44	1.43
13079243--13079294	14	3.8	13	78	19	52	44	3	0	51	1.19
13079734--13080262	263	2.0	262	95	0	959	33	23	14	28	1.94
13094889--13094936	24	1.9	26	83	8	64	16	6	10	66	1.41
13106844--13106876	17	1.9	18	88	11	52	42	15	0	42	1.46
13120392--13120575	96	1.9	95	85	11	252	39	13	14	33	1.84
13121000--13121931	464	2.0	464	97	0	1747	38	15	19	26	1.92
13128634--13128878	48	5.1	48	85	0	292	26	20	28	24	1.99
13139268--13139363	48	2.0	48	95	0	174	34	3	32	30	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13141570--13141953	42	9.1	42	100	0	768	26	21	24	28	1.99
13142286--13142320	12	2.9	12	95	0	61	2	37	17	42	1.64
13142309--13142353	21	2.1	21	83	0	54	2	42	22	33	1.66
13146010--13146245	51	4.6	51	97	0	454	42	15	18	23	1.88
13147202--13147293	47	2.0	47	84	0	121	46	3	7	42	1.48
13147290--13147335	24	1.9	24	82	8	58	13	4	2	80	0.95
13147364--13147390	14	1.9	14	100	0	54	44	7	0	48	1.31
13150827--13150856	2	15.0	2	100	0	60	50	0	0	50	1.00
13151822--13151846	7	3.6	7	100	0	50	16	12	0	72	1.13
13154482--13154538	22	2.5	22	80	13	62	33	12	28	26	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136