genome.fa.s10.2.7.7.80.10.50.1000.132.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  132  of  136  ( 16211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45627615--45627657	23	1.9	23	95	4	79	53	6	9	30	1.59
45630464--45630518	24	2.2	24	75	15	58	40	7	1	50	1.40
45631858--45631884	7	3.9	7	100	0	54	59	0	0	40	0.98
45641515--45641569	19	2.9	19	86	7	69	54	1	0	43	1.10
45643461--45643697	118	2.0	119	98	0	458	39	20	12	28	1.88
45648295--45648342	4	12.0	4	91	8	80	25	0	25	50	1.50
45649769--45649822	26	2.0	28	85	7	76	42	5	3	48	1.44
45649951--45649999	14	3.5	14	75	10	55	63	0	2	34	1.06
45657798--45657831	3	11.3	3	93	0	59	70	0	29	0	0.87
45658615--45658653	3	13.0	3	83	0	51	28	35	5	30	1.79
45673522--45673574	4	13.2	4	100	0	106	24	0	24	50	1.49
45676755--45676823	29	2.3	31	85	7	88	31	2	10	55	1.48
45679395--45679439	24	1.9	24	82	13	58	35	8	4	51	1.54
45680410--45680447	3	12.7	3	83	10	51	34	0	2	63	1.09
45680472--45680507	9	4.1	9	85	7	56	77	8	13	0	0.98
45682052--45682207	57	2.7	57	94	1	267	30	23	12	33	1.92
45683889--45683927	16	2.4	16	87	8	53	48	2	25	23	1.63
45684147--45684256	23	5.1	21	85	7	141	20	21	21	36	1.95
45699913--45699940	6	4.7	6	100	0	56	46	0	0	53	1.00
45700439--45700482	22	2.0	23	90	4	72	34	0	15	50	1.45
45703389--45703452	25	2.4	27	74	10	69	50	1	3	45	1.27
45708884--45708928	16	2.8	16	100	0	90	24	26	4	44	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45716791--45716820	6	5.0	6	91	0	51	50	0	3	46	1.18
45721715--45721981	51	5.2	51	77	3	313	28	14	27	28	1.95
45721714--45721981	102	2.6	102	100	0	536	28	14	27	29	1.95
45728107--45728137	13	2.4	13	94	0	53	38	3	22	35	1.71
45733836--45733908	15	4.9	15	69	16	53	57	0	5	36	1.22
45733840--45733893	14	3.8	14	74	13	56	53	0	7	38	1.29
45733841--45733888	13	3.5	13	78	13	51	54	0	6	39	1.26
45733840--45733901	28	2.2	29	88	2	99	56	0	6	37	1.25
45733855--45733900	14	3.3	14	80	20	60	54	0	6	39	1.26
45733838--45733902	29	2.2	30	83	8	98	56	0	6	36	1.24
45741231--45741312	30	2.7	30	90	0	128	24	24	4	46	1.72
45747857--45747907	25	2.0	26	84	3	68	43	3	21	31	1.71
45756617--45756661	23	1.9	23	86	13	65	26	0	8	64	1.23
45758200--45758229	3	10.0	3	100	0	60	0	33	0	66	0.92
45758224--45759020	117	6.7	118	87	3	1008	15	25	20	37	1.92
45758224--45759023	237	3.3	237	87	2	1095	15	25	20	37	1.93
45758224--45759020	354	2.2	358	86	3	1100	15	25	20	37	1.92
45758789--45759025	126	1.9	126	90	0	384	15	26	18	38	1.91
45759685--45759725	22	2.0	22	85	9	59	29	0	4	65	1.13
45761224--45761283	31	1.9	31	86	0	84	33	8	13	45	1.73
45764461--45764523	27	2.3	27	80	0	72	28	26	34	9	1.88
45769822--45770121	51	5.9	51	94	0	474	17	25	19	38	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45769889--45770021	27	5.1	27	61	29	74	19	25	20	34	1.96
45769916--45770045	24	5.2	24	61	29	56	16	23	20	39	1.92
45781896--45782699	51	15.8	51	79	1	871	16	26	19	37	1.93
45781896--45782702	102	8.0	102	92	1	1282	16	26	19	37	1.93
45782462--45782549	30	3.2	30	62	31	79	14	27	19	38	1.91
45788579--45788606	14	2.0	14	100	0	56	64	0	28	7	1.20
45789254--45789321	34	2.0	34	100	0	136	35	11	11	41	1.78
45789972--45790103	70	1.9	70	84	6	178	29	13	30	26	1.94
45804290--45804334	21	2.1	21	84	8	56	15	0	11	73	1.10
45805592--45806134	271	2.0	272	99	0	1079	31	9	10	48	1.69
45806574--45806622	16	2.8	17	84	9	55	40	0	0	59	0.98
45808387--45808430	23	1.9	23	81	9	54	36	2	2	59	1.23
45809826--45809991	57	3.0	54	81	8	174	21	31	10	36	1.87
45812234--45812309	32	2.4	30	75	16	73	26	2	5	65	1.27
45814214--45814259	20	2.2	20	82	14	58	52	28	8	10	1.66
45818688--45818730	9	4.7	9	82	5	59	23	0	4	72	1.04
45823287--45823333	24	2.0	24	95	0	85	31	29	23	14	1.95
45831126--45831163	11	3.7	11	83	16	55	68	0	0	31	0.90
45831248--45831314	27	2.5	27	82	0	89	29	32	29	7	1.85
45831439--45831503	24	2.7	23	69	9	58	70	0	26	3	1.01
45831703--45831884	76	2.4	77	81	9	212	30	4	13	51	1.61
45835227--45835265	17	2.3	17	90	0	60	15	7	7	69	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45835239--45836022	158	5.1	158	93	2	1101	30	8	7	53	1.58
45836224--45836267	22	2.0	23	82	13	56	40	13	9	36	1.76
45839227--45839347	30	4.4	30	73	21	129	61	8	6	23	1.48
45839250--45839282	12	2.8	12	95	0	57	69	6	0	24	1.10
45839287--45839337	16	3.3	16	71	20	54	54	11	7	25	1.63
45850641--45850677	19	2.0	18	89	5	56	56	0	0	43	0.99
45855006--45855067	4	15.5	4	100	0	124	50	24	0	25	1.50
45855072--45855445	189	2.0	185	89	4	563	31	17	12	37	1.88
45869009--45869050	16	2.7	15	79	20	50	57	0	2	40	1.12
45880844--45880912	6	11.5	6	74	0	66	20	59	5	14	1.56
45880833--45880885	18	2.9	18	85	0	79	24	58	3	13	1.51
45880903--45880966	30	2.4	26	82	15	69	23	57	7	10	1.58
45880921--45880978	24	2.4	25	80	8	84	25	58	8	6	1.53
45881037--45881332	30	10.3	30	73	13	228	20	49	7	22	1.74
45881036--45881251	42	5.1	41	70	8	184	20	49	8	22	1.75
45881019--45881254	84	2.8	84	97	1	438	20	49	8	22	1.74
45881019--45881332	144	2.2	147	79	11	396	20	49	7	22	1.73
45881019--45881332	60	5.4	60	77	13	334	20	49	7	22	1.73
45881300--45881350	18	2.8	18	84	0	66	19	49	1	29	1.60
45881240--45881440	78	2.6	78	91	0	303	18	49	5	26	1.70
45881328--45881386	30	2.0	30	82	0	73	16	47	10	25	1.78
45881385--45881428	18	2.4	18	80	0	52	13	56	0	29	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45881439--45881719	30	9.5	30	84	5	356	24	54	7	14	1.65
45881487--45881749	89	3.0	88	90	3	413	25	55	6	12	1.61
45881711--45881834	18	6.6	18	68	17	81	23	58	5	12	1.54
45881715--45881795	15	5.4	15	66	21	53	19	60	6	13	1.54
45881439--45881809	30	12.5	29	80	10	292	23	55	7	14	1.63
45881782--45881869	6	14.2	6	74	7	50	28	57	3	10	1.47
45881611--45881840	30	7.7	30	83	3	198	24	58	5	11	1.55
45881830--45881899	15	4.5	15	70	5	50	34	58	1	5	1.31
45881754--45881889	30	4.5	30	77	1	103	30	58	3	8	1.45
45881801--45881863	24	2.6	24	84	0	72	31	57	3	7	1.43
45889732--45889777	17	2.7	18	76	10	60	60	0	0	39	0.97
45892689--45892713	13	1.9	13	100	0	50	80	8	0	12	0.92
45895066--45895093	14	2.0	14	100	0	56	71	14	0	14	1.15
45902969--45903013	22	2.2	20	84	8	54	53	2	0	44	1.13
45908358--45908400	17	2.6	17	82	13	54	37	0	0	62	0.95
45909508--45909566	28	2.1	29	87	3	84	49	5	20	25	1.69
45917152--45917199	21	2.3	21	85	0	60	16	20	16	45	1.85
45918177--45918245	31	2.3	31	89	2	104	43	10	10	36	1.72
45920239--45920282	9	5.0	9	83	5	54	22	0	2	75	0.92
45920227--45920275	20	2.5	20	84	12	66	18	0	2	79	0.83
45921057--45921156	34	2.9	34	83	1	128	38	1	17	44	1.55
45921054--45921175	34	3.7	32	80	8	122	39	1	14	44	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45921225--45921620	125	3.2	123	88	3	560	35	17	17	29	1.93
45924645--45924701	25	2.3	24	80	11	71	54	3	0	42	1.17
45924649--45924839	91	2.1	91	94	1	328	53	4	3	38	1.36
45925181--45925223	18	2.4	18	92	0	68	41	9	27	20	1.83
45931231--45931351	55	2.2	55	100	0	242	28	3	37	31	1.73
45935261--45935289	7	4.1	7	100	0	58	27	0	0	72	0.85
45936643--45936870	4	57.0	4	100	0	456	25	0	25	50	1.50
45937369--45937499	64	2.0	64	85	2	174	28	13	12	45	1.81
45956612--45956677	29	2.3	29	89	0	96	48	18	9	24	1.76
45970640--45970706	31	2.2	31	88	0	98	19	7	19	53	1.68

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136