genome.fa.s10.2.7.7.80.10.50.1000.30.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  30  of  136  ( 16211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9706577--9706624	7	6.9	7	100	0	96	41	0	14	43	1.45
9708285--9708334	24	2.1	24	92	3	84	20	0	16	64	1.30
9712510--9713097	301	1.9	304	84	3	792	34	19	15	29	1.94
9715015--9715053	12	3.2	12	81	3	51	56	0	28	15	1.40
9714960--9715088	68	1.9	69	85	1	179	46	6	21	25	1.74
9715728--9715765	9	4.0	10	90	10	62	15	10	21	52	1.72
9715728--9715765	19	2.0	19	100	0	76	15	10	21	52	1.72
9720719--9720811	33	2.8	33	85	0	132	23	29	8	38	1.84
9722512--9722542	15	2.1	15	100	0	62	29	51	0	19	1.47
9724233--9724287	25	2.2	25	77	6	58	74	1	10	12	1.15
9740017--9740073	27	2.1	27	96	0	105	35	15	15	33	1.90
9741466--9741529	24	2.7	23	79	11	67	45	0	0	54	0.99
9751160--9751254	45	2.1	45	90	0	154	26	17	24	31	1.97
9757168--9757211	21	2.1	21	82	0	52	27	15	34	22	1.95
9761262--9761379	45	2.6	45	80	4	141	44	9	17	27	1.80
9761408--9761470	27	2.4	26	78	2	72	39	23	23	12	1.89
9763883--9763922	20	2.0	20	85	5	53	37	2	17	42	1.63
9772069--9772419	90	3.9	89	82	5	374	35	20	9	34	1.85
9772552--9772648	10	10.6	9	70	16	65	64	2	3	29	1.20
9772565--9772612	19	2.5	20	82	6	62	64	2	2	31	1.16
9772575--9772658	28	2.9	28	80	7	80	63	1	3	32	1.19
9772846--9772910	19	3.4	19	79	8	69	30	7	0	61	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9772846--9772899	19	2.7	20	85	8	74	25	7	0	66	1.17
9780698--9780722	2	12.5	2	100	0	50	52	0	0	48	1.00
9783593--9783628	17	2.1	18	89	5	56	66	0	5	27	1.13
9783640--9783707	21	3.2	20	74	15	66	27	22	8	41	1.83
9788011--9788145	25	5.4	25	75	16	111	31	22	28	16	1.96
9788082--9788145	26	2.4	27	87	10	96	37	21	26	14	1.92
9797277--9797325	18	2.7	18	83	3	71	65	4	0	30	1.11
9797291--9797347	18	3.4	17	79	16	57	66	3	1	28	1.18
9813831--9813879	17	3.1	17	85	11	68	42	2	0	55	1.11
9818935--9819021	43	2.0	43	95	0	156	34	14	16	34	1.89
9822605--9822659	20	2.8	20	100	0	110	38	5	14	41	1.69
9823349--9823397	21	2.3	21	92	0	80	14	36	22	26	1.92
9826202--9826365	40	4.1	39	81	6	170	32	23	15	27	1.95
9831920--9832034	44	2.7	43	80	4	133	25	18	26	30	1.98
9831906--9832034	43	3.0	43	76	8	127	24	17	26	31	1.97
9834828--9834877	22	2.3	23	86	6	68	52	0	0	48	1.00
9834848--9834886	16	2.4	17	82	4	53	46	2	0	51	1.14
9838017--9838501	50	9.6	50	85	4	571	27	20	29	22	1.98
9839453--9839500	25	1.9	25	91	0	78	20	22	18	37	1.94
9846930--9846963	10	3.3	10	92	8	59	47	2	17	32	1.63
9851493--9851675	94	1.9	94	84	3	242	39	4	19	37	1.71
9851595--9851760	83	2.0	83	85	2	226	40	6	21	31	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9851533--9851951	196	2.3	180	80	9	459	37	7	21	33	1.82
9851713--9851912	103	2.0	102	86	4	280	34	10	22	33	1.88
9867914--9867972	29	2.0	29	100	0	118	33	11	13	40	1.81
9874326--9874365	21	2.0	21	90	5	64	72	0	17	10	1.11
9875140--9875165	3	8.7	3	100	0	52	34	0	0	65	0.93
9881003--9881027	11	2.3	11	100	0	50	48	8	16	28	1.74
9881404--9881742	109	3.1	109	92	2	549	32	16	17	33	1.93
9881929--9882006	41	1.9	41	84	5	104	51	3	11	33	1.56
9883751--9884035	44	6.6	43	72	10	181	24	22	21	30	1.99
9883795--9884054	129	2.0	128	87	3	376	23	21	23	32	1.98
9890035--9890063	14	2.0	15	93	6	51	27	0	20	51	1.47
9890255--9890311	28	2.0	28	90	6	89	56	0	5	38	1.22
9891233--9891346	61	1.9	61	83	8	153	39	2	14	43	1.59
9891375--9891551	64	2.8	64	86	8	240	32	7	17	41	1.78
9892131--9892155	2	12.5	2	100	0	50	48	0	0	52	1.00
9893554--9893589	18	2.0	18	94	0	63	30	16	13	38	1.88
9899124--9899575	109	4.2	109	93	0	757	34	17	17	30	1.93
9905064--9905131	25	2.7	25	88	0	91	26	25	19	29	1.98
9912188--9912248	18	3.4	18	73	8	61	11	34	8	45	1.70
9912186--9912259	36	2.1	36	84	0	94	16	32	6	44	1.73
9913475--9913521	22	2.1	22	100	0	94	44	10	8	36	1.70
9916151--9916215	33	1.9	35	90	6	107	10	0	40	49	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9916201--9916539	97	3.5	95	81	5	380	39	2	19	39	1.64
9916576--9916865	125	2.3	126	90	1	449	33	19	20	26	1.96
9919853--9920008	58	2.6	59	72	15	135	48	8	3	38	1.53
9919990--9920031	19	2.2	20	95	4	77	45	9	4	40	1.58
9920646--9920718	29	2.5	30	80	14	89	9	9	45	35	1.70
9922346--9922386	21	2.0	21	100	0	82	46	4	4	43	1.46
9922390--9922435	11	4.3	10	84	13	56	43	2	30	23	1.66
9922394--9922436	10	4.0	10	82	14	50	44	2	30	23	1.66
9923470--9923508	19	2.1	19	85	9	53	51	0	2	46	1.14
9923495--9923522	3	9.3	3	100	0	56	32	0	0	67	0.91
9927454--9927488	3	11.7	3	100	0	70	65	0	0	34	0.93
9927784--9927824	21	2.0	21	85	9	57	36	7	4	51	1.51
9929726--9930086	168	2.2	166	87	5	498	26	8	11	54	1.64
9941223--9941368	58	2.5	59	81	9	151	33	23	17	24	1.96
9943783--9943832	23	2.1	24	85	10	68	42	4	14	40	1.64
9946600--9946657	5	11.6	5	82	14	57	60	5	0	34	1.19
9946600--9946667	10	6.9	10	76	15	61	60	7	0	32	1.24
9946595--9946669	20	3.9	19	77	14	73	61	6	0	32	1.22
9947268--9947298	14	2.2	14	94	0	53	19	0	22	58	1.40
9949135--9949194	26	2.3	26	91	0	93	41	15	15	28	1.86
9957392--9957446	19	2.9	19	76	10	58	54	1	3	40	1.28
9958057--9958097	22	1.9	22	85	5	57	41	2	0	56	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9959024--9959075	11	4.7	11	78	0	59	19	21	9	50	1.76
9967944--9968021	25	3.1	25	88	0	111	34	17	19	28	1.95
9970079--9970368	155	1.9	154	88	0	436	33	16	23	26	1.96
9970366--9970505	41	3.4	41	99	1	273	34	24	19	22	1.96
9970577--9970652	40	1.9	40	83	0	98	35	19	23	21	1.96
9970419--9970719	156	1.9	156	85	2	410	34	18	21	24	1.96
9970768--9970802	14	2.5	14	90	0	52	28	0	20	51	1.47
9971056--9971121	27	2.4	28	85	7	82	24	0	28	46	1.52
9971056--9971272	14	15.6	14	71	11	117	19	1	31	47	1.59
9971072--9971199	21	6.2	19	68	21	71	20	0	31	47	1.56
9971110--9971200	35	2.6	35	81	8	98	17	1	32	48	1.55
9971070--9971219	62	2.4	63	82	10	166	19	1	32	47	1.58
9971135--9971233	21	4.7	21	69	18	55	19	2	31	47	1.61
9971153--9971250	50	1.9	51	91	2	162	18	3	33	44	1.65
9971179--9971268	43	2.1	42	87	6	128	17	3	32	46	1.65
9975682--9975891	43	4.9	43	78	4	203	28	17	23	30	1.97
9990990--9991023	13	2.5	14	90	4	52	0	20	2	76	0.92
9995366--9995396	6	5.2	6	96	0	53	16	3	64	16	1.42
9999505--9999559	16	3.5	15	75	22	51	38	7	0	54	1.28
10000382--10000521	40	3.5	40	80	6	142	30	23	18	27	1.98
10001359--10001408	11	4.6	10	79	16	55	4	22	2	72	1.12
10003638--10003788	42	3.5	42	84	4	178	29	25	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10003638--10003788	43	3.5	42	85	4	169	29	25	18	26	1.98
10006071--10006125	12	4.8	12	75	22	55	45	0	1	52	1.11
10006079--10006121	22	1.9	23	90	4	70	44	0	2	53	1.13
10006066--10006127	23	2.8	22	78	7	72	46	0	1	51	1.10
10006519--10006543	12	2.1	12	100	0	50	68	8	0	24	1.16
10006587--10006662	29	2.7	30	82	10	81	63	3	1	31	1.21
10006609--10006697	19	4.6	19	72	9	65	67	3	1	28	1.14
10006604--10006653	20	2.5	21	80	9	68	60	2	0	38	1.09
10007169--10007203	16	2.1	17	89	5	54	25	8	2	62	1.38
10012606--10012697	44	2.1	43	82	11	107	55	3	3	38	1.32

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136