genome.fa.s10.2.7.7.80.10.50.1000.123.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  123  of  136  ( 16211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41848024--41848098	23	3.3	23	90	0	123	33	24	21	21	1.97
41850509--41850561	3	17.3	3	78	3	52	26	7	0	66	1.18
41852503--41852757	128	2.0	127	99	0	501	47	12	2	37	1.54
41852726--41852755	2	15.0	2	92	0	51	53	0	0	46	1.00
41859075--41859125	4	12.8	4	100	0	102	50	0	23	25	1.49
41861913--41861937	2	12.5	2	100	0	50	52	48	0	0	1.00
41862254--41862303	4	12.5	4	86	0	73	24	4	24	48	1.68
41862686--41862738	3	17.7	3	100	0	106	67	0	0	32	0.91
41864179--41864213	17	2.1	17	89	10	54	31	0	22	45	1.53
41873206--41873245	21	2.0	20	85	5	53	52	2	37	7	1.43
41879437--41879886	131	3.4	131	92	0	722	30	21	23	24	1.99
41884054--41884153	41	2.4	39	83	9	128	28	22	20	30	1.98
41890636--41890688	24	2.2	24	86	0	79	32	20	11	35	1.88
41893856--41893886	9	3.4	9	90	0	53	25	12	22	38	1.90
41896526--41896567	20	2.1	20	90	0	66	40	9	16	33	1.81
41896576--41896606	15	2.1	15	100	0	62	22	12	25	38	1.90
41902225--41902255	15	2.1	15	100	0	62	22	12	25	38	1.90
41906638--41906814	90	2.0	90	85	4	241	40	22	13	23	1.89
41910341--41910374	2	17.5	2	93	6	61	47	0	0	52	1.00
41919546--41919588	21	2.1	20	82	4	50	39	6	0	53	1.28
41920986--41921033	22	2.1	23	92	3	80	29	35	12	22	1.91
41920950--41921259	154	2.0	155	99	0	613	40	29	11	18	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41921140--41921187	22	2.1	23	92	3	80	29	35	12	22	1.91
41942259--41942328	28	2.5	28	92	0	113	35	15	8	40	1.78
41945692--41945750	31	1.9	31	93	3	102	54	0	10	35	1.34
41946278--41946331	25	2.3	23	77	20	58	35	0	3	61	1.14
41946692--41946780	45	2.0	45	95	0	160	26	12	19	41	1.87
41947231--41947341	53	2.1	54	86	1	152	45	13	9	30	1.76
41948200--41948267	35	1.9	35	90	0	109	23	7	4	64	1.37
41948200--41948256	18	3.2	18	73	14	64	26	5	1	66	1.22
41948202--41948258	17	3.3	17	69	13	53	26	5	1	66	1.22
41952661--41952771	53	2.1	54	86	1	152	45	13	9	30	1.76
41953630--41953697	35	1.9	35	90	0	109	23	7	4	64	1.37
41953630--41953686	18	3.2	18	73	14	64	26	5	1	66	1.22
41953632--41953688	17	3.3	17	69	13	53	26	5	1	66	1.22
41961494--41961535	10	4.2	10	84	9	59	0	26	0	73	0.83
41961494--41961535	15	2.8	15	88	0	66	0	26	0	73	0.83
41961535--41961562	5	5.6	5	100	0	56	17	39	0	42	1.50
41961897--41961923	2	13.5	2	100	0	54	0	0	48	51	1.00
41967310--41967363	23	2.3	24	93	3	92	57	0	0	42	0.98
41970567--41970608	20	2.0	20	86	4	57	45	0	4	50	1.23
41972792--41972827	2	18.0	2	94	0	63	47	0	0	52	1.00
41980362--41980445	41	2.1	40	95	4	152	46	13	13	27	1.79
41986081--41986142	32	2.0	32	90	3	99	58	1	1	38	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41986081--41986265	42	4.5	41	90	6	286	61	0	2	35	1.15
41986081--41986215	11	12.9	11	68	19	67	60	0	2	37	1.15
41991022--41991080	31	1.9	31	89	6	93	40	0	13	45	1.43
41991361--41991410	24	2.1	24	92	0	82	30	6	18	46	1.73
41991679--41991946	133	2.0	134	99	0	529	52	12	7	27	1.65
41995231--41995305	31	2.4	32	80	12	93	54	2	4	38	1.33
41995275--41995325	22	2.4	21	80	3	57	54	0	0	45	0.99
41998451--41998507	29	2.0	29	82	6	71	35	1	10	52	1.46
42001619--42001655	15	2.4	16	86	13	51	27	8	2	62	1.37
42004349--42004817	153	3.0	154	92	2	762	31	12	13	42	1.80
42006901--42006937	15	2.5	15	95	0	65	86	2	10	0	0.67
42015054--42015097	22	2.0	22	86	0	61	15	20	13	50	1.78
42023129--42023161	2	16.5	2	87	12	50	51	0	3	45	1.16
42028336--42028375	21	1.9	21	94	0	71	32	0	67	0	0.91
42040008--42040069	29	2.1	29	100	0	124	27	16	16	40	1.89
42043646--42043902	128	2.0	129	99	0	507	38	17	14	29	1.89
42046291--42046472	59	3.1	59	100	0	364	52	11	6	29	1.62
42049968--42050028	28	2.2	28	85	5	81	45	0	3	50	1.17
42050520--42050579	16	3.8	16	90	0	66	31	33	0	35	1.58
42050533--42050589	16	3.6	16	92	0	78	33	35	0	31	1.58
42052572--42052736	84	2.0	84	96	0	303	33	16	15	34	1.90
42062596--42062668	33	2.2	33	83	11	89	27	6	17	47	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42067260--42067292	14	2.4	14	95	5	59	30	15	6	48	1.69
42078621--42078662	13	3.1	13	80	19	50	59	2	0	38	1.10
42083311--42083400	39	2.2	41	88	3	130	54	5	2	37	1.36
42086001--42086047	24	2.0	23	84	12	60	51	4	14	29	1.62
42086350--42086394	22	2.0	23	86	4	65	13	4	37	44	1.64
42086579--42086720	47	3.0	47	97	2	268	33	0	14	51	1.47
42087043--42087112	36	2.0	35	91	2	113	32	8	27	31	1.87
42089124--42089197	11	6.6	11	76	3	58	64	6	1	27	1.26
42091873--42091897	13	1.9	13	100	0	50	76	8	0	16	1.02
42094214--42094275	24	2.7	22	77	15	63	61	4	3	30	1.33
42094491--42094541	25	2.0	27	84	7	70	45	1	5	47	1.38
42098508--42098538	6	5.2	6	100	0	62	64	16	0	19	1.29
42100688--42100712	12	2.1	12	100	0	50	8	8	52	32	1.60
42101385--42101551	83	2.0	84	98	1	327	33	8	9	48	1.66
42101658--42102008	170	2.1	170	89	1	533	30	17	19	31	1.95
42107260--42107336	14	5.0	15	71	20	52	42	14	9	33	1.77
42107276--42107315	20	2.0	20	90	0	62	50	12	10	27	1.72
42107264--42107330	34	1.9	35	90	3	109	46	13	8	31	1.74
42107561--42107637	36	2.1	36	100	0	154	29	6	10	53	1.60
42107561--42107651	36	2.5	36	91	3	121	29	6	12	51	1.64
42108298--42108520	111	2.0	112	98	0	430	32	23	13	30	1.92
42113156--42113191	8	4.5	8	86	13	56	33	0	2	63	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42113148--42113186	16	2.4	17	91	4	62	30	0	5	64	1.15
42113591--42113622	16	2.0	16	100	0	64	62	12	18	6	1.50
42114490--42114590	41	2.6	37	78	7	112	25	13	25	34	1.93
42118632--42118685	24	2.2	24	100	0	108	22	20	7	50	1.73
42118675--42118717	19	2.2	20	84	12	63	32	18	0	48	1.48
42119071--42119124	18	3.1	17	81	7	72	35	20	0	44	1.52
42119074--42119139	18	3.7	17	75	20	64	36	19	0	43	1.51
42119071--42119147	36	2.2	36	84	11	97	37	19	0	42	1.51
42119834--42119885	12	4.2	12	76	9	50	1	15	3	78	0.98
42120256--42120304	23	2.1	23	92	7	82	51	6	0	42	1.27
42120294--42120318	9	2.8	9	100	0	50	68	8	0	24	1.16
42120266--42120317	23	2.3	23	83	6	61	59	5	0	34	1.21
42127691--42127733	21	2.0	21	100	0	86	34	13	13	37	1.85
42130254--42130309	22	2.5	23	82	2	69	51	1	1	44	1.22
42130285--42130324	16	2.5	16	91	0	62	47	2	7	42	1.45
42141307--42141479	86	2.0	87	98	1	339	47	6	8	37	1.60
42146045--42146075	6	5.0	6	96	4	53	19	32	16	32	1.94
42148022--42148059	18	2.1	18	90	0	58	18	15	13	52	1.74
42160776--42160820	21	2.1	21	84	8	56	31	4	4	60	1.37
42164896--42164929	13	2.8	12	86	8	50	41	0	2	55	1.15
42168548--42168596	19	2.5	20	83	6	73	67	2	0	30	1.02
42171396--42171601	113	1.8	114	97	2	396	29	7	23	39	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42172610--42172653	18	2.3	18	84	11	52	50	6	0	43	1.29
42176245--42176322	33	2.4	33	81	12	97	25	26	17	29	1.98
42176263--42176459	105	1.9	101	84	4	259	28	23	14	32	1.94
42192574--42192657	38	2.2	38	97	0	159	25	35	5	33	1.80
42193034--42193070	18	2.1	18	94	0	65	48	18	0	32	1.49
42202732--42202761	13	2.3	13	94	0	51	33	3	13	50	1.58
42202864--42203098	50	4.7	50	87	0	326	25	22	31	21	1.98
42203314--42203352	19	2.1	19	100	0	78	53	5	20	20	1.64
42205332--42205369	19	2.0	19	89	0	58	50	0	2	47	1.15
42205822--42205864	18	2.4	18	88	0	59	41	44	2	11	1.53

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136