genome.fa.s10.2.7.7.80.10.50.1000.40.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  40  of  136  ( 16211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13159920--13159949	2	15.0	2	92	0	51	46	0	3	50	1.18
13161410--13161483	36	2.1	36	97	0	139	36	27	9	27	1.87
13163133--13163204	20	3.8	20	70	19	64	38	1	0	59	1.06
13168004--13168051	19	2.5	20	86	6	64	45	4	10	39	1.58
13168013--13168051	20	2.0	20	90	5	62	48	2	7	41	1.45
13168096--13168164	14	4.6	15	75	12	52	76	4	11	7	1.12
13168202--13168226	6	4.2	6	100	0	50	84	0	16	0	0.63
13168594--13168627	17	1.9	18	88	5	52	41	0	23	35	1.55
13169082--13169135	21	2.5	22	79	14	67	20	24	18	37	1.94
13182265--13182332	31	2.2	30	79	5	82	41	13	11	33	1.81
13182980--13183741	381	2.0	381	100	0	1524	35	23	14	25	1.93
13194586--13194621	16	2.2	16	90	0	54	33	16	0	50	1.46
13197113--13197142	8	3.8	8	100	0	60	76	0	0	23	0.78
13199370--13199418	3	16.7	3	95	4	91	69	0	0	30	0.89
13212713--13212769	21	2.7	21	91	0	87	38	8	8	43	1.67
13212758--13212816	17	3.4	17	70	21	59	37	16	11	33	1.86
13212749--13212815	35	1.9	35	96	0	125	35	17	10	35	1.85
13212749--13212798	18	2.9	17	70	24	50	38	18	8	36	1.80
13214231--13214258	13	2.2	13	100	0	56	46	14	14	25	1.82
13215989--13216268	132	2.1	132	100	0	560	30	16	19	33	1.94
13225177--13225247	33	2.2	33	82	10	83	22	4	1	71	1.11
13225453--13225488	19	1.9	18	88	5	54	50	5	2	41	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13227605--13227647	11	4.0	11	79	14	54	69	0	4	25	1.07
13227560--13227640	20	4.0	20	72	15	67	67	1	3	27	1.14
13228690--13228742	21	2.6	20	82	11	72	37	0	1	60	1.08
13228684--13228737	9	5.3	10	79	16	58	35	0	1	62	1.06
13228687--13228756	31	2.2	32	78	12	74	42	0	2	54	1.15
13232691--13232752	25	2.5	24	71	2	61	33	20	19	25	1.96
13238831--13239041	43	4.9	43	86	0	251	36	19	16	26	1.93
13238808--13239033	86	2.6	86	80	1	211	38	20	15	26	1.92
13239428--13239463	17	2.1	17	89	0	54	36	11	8	44	1.70
13241962--13241995	17	2.1	17	88	5	52	55	8	14	20	1.65
13254540--13254629	24	3.8	24	92	0	153	11	46	4	37	1.60
13255418--13255450	8	4.0	8	96	4	57	0	15	24	60	1.35
13260448--13260487	14	2.9	14	84	0	53	42	17	7	32	1.77
13260413--13260479	34	1.9	35	87	3	100	44	13	10	31	1.77
13261944--13261970	11	2.5	11	100	0	54	40	0	0	59	0.98
13264200--13264231	11	2.9	11	100	0	64	37	28	9	25	1.87
13264647--13264771	43	3.0	42	81	4	135	29	24	16	29	1.96
13270526--13270646	43	2.8	43	83	1	145	30	24	16	28	1.97
13273581--13273624	22	2.0	22	82	8	54	31	20	15	31	1.94
13274279--13274316	19	2.0	20	89	5	60	18	13	13	55	1.69
13274569--13274623	20	2.8	19	81	5	65	50	10	5	32	1.60
13285787--13285863	27	2.9	27	82	0	82	31	19	28	20	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13292026--13292050	2	12.5	2	100	0	50	0	52	0	48	1.00
13294865--13294900	18	1.9	19	88	5	56	19	8	16	55	1.66
13295005--13295064	18	3.3	18	84	9	70	55	3	0	41	1.16
13298175--13298256	31	2.7	32	77	7	80	36	2	8	52	1.45
13299512--13299567	22	2.5	23	82	2	69	51	1	1	44	1.22
13299543--13299582	16	2.5	16	91	0	62	47	2	7	42	1.45
13299655--13299682	9	3.1	9	100	0	56	32	0	10	57	1.33
13299571--13299891	68	4.8	68	98	0	619	39	4	9	47	1.54
13299723--13299750	9	3.1	9	100	0	56	32	0	10	57	1.33
13299791--13299818	9	3.1	9	100	0	56	32	0	10	57	1.33
13299859--13299886	9	3.1	9	100	0	56	32	0	10	57	1.33
13306693--13306724	17	1.9	16	93	6	55	53	31	12	3	1.54
13306865--13306905	19	2.1	20	82	13	50	65	2	0	31	1.05
13309761--13309845	37	2.3	38	95	4	163	41	3	28	27	1.72
13313505--13313562	20	2.9	20	81	0	71	36	29	20	13	1.91
13320810--13321316	125	4.1	124	90	2	757	31	16	22	30	1.95
13324287--13324596	114	2.7	113	95	2	568	41	7	8	41	1.64
13324598--13325114	22	23.8	22	83	5	601	24	0	29	44	1.58
13324598--13325114	65	7.9	65	84	3	625	24	0	29	44	1.58
13324895--13324925	6	5.0	6	92	7	53	16	0	51	32	1.44
13324896--13324923	13	2.2	13	100	0	56	14	0	57	28	1.38
13325044--13325097	27	2.0	27	88	0	81	24	0	33	42	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13325642--13325676	18	1.9	18	94	0	61	42	11	28	17	1.83
13325947--13325981	16	2.2	16	89	0	52	22	34	22	20	1.97
13326529--13326566	20	1.9	20	84	10	51	55	7	2	34	1.43
13327378--13327478	51	2.0	50	80	9	114	46	2	21	28	1.66
13327468--13327510	11	3.9	11	87	0	50	48	2	25	23	1.62
13327459--13327516	22	2.6	22	78	13	64	44	1	29	24	1.63
13328788--13328822	5	7.0	5	93	0	52	20	25	20	34	1.96
13338270--13338324	29	1.9	28	88	3	83	43	0	10	45	1.39
13338272--13338339	29	2.4	27	79	11	73	45	0	13	41	1.43
13340945--13341006	21	3.0	21	79	15	58	29	43	19	8	1.79
13341117--13341480	49	7.4	49	99	0	710	43	1	7	46	1.42
13344518--13345170	125	5.2	124	92	0	1054	29	20	17	32	1.96
13344518--13345178	249	2.7	249	92	0	1083	29	20	17	32	1.96
13345361--13345402	22	2.0	22	85	4	59	50	35	0	14	1.43
13348627--13348767	73	1.9	74	89	4	223	29	18	17	34	1.94
13353467--13353533	10	6.9	10	74	19	61	79	0	17	2	0.86
13353473--13353541	6	11.5	6	75	17	54	79	0	15	4	0.88
13353465--13353513	19	2.6	19	84	15	66	83	0	12	4	0.77
13353465--13353535	25	3.1	22	75	15	72	80	0	16	2	0.83
13355432--13355464	13	2.6	13	95	4	59	75	12	12	0	1.04
13363436--13363936	89	5.6	89	89	0	759	28	25	23	21	1.99
13363951--13364186	50	4.7	50	72	2	186	34	20	19	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13363955--13364186	100	2.3	100	85	1	322	34	20	19	25	1.96
13364223--13364473	44	5.7	45	75	9	187	31	18	23	26	1.97
13364407--13364828	129	3.3	129	82	6	525	30	22	21	26	1.99
13364687--13364789	45	2.3	45	78	8	113	33	21	22	22	1.97
13367880--13367918	19	2.1	18	85	4	51	28	2	5	64	1.28
13371347--13371371	13	1.9	13	100	0	50	32	4	0	64	1.12
13371375--13371452	38	2.1	37	83	7	95	65	1	3	29	1.18
13372957--13372997	20	2.0	21	95	4	75	39	0	2	58	1.11
13373029--13373096	24	2.9	23	80	10	59	58	0	1	39	1.07
13375545--13375580	14	2.3	17	86	13	51	33	16	0	50	1.46
13380343--13380371	15	1.9	15	100	0	58	41	20	13	24	1.89
13382040--13382070	6	5.2	6	100	0	62	32	0	67	0	0.91
13385384--13385626	40	6.0	39	70	9	155	30	17	20	31	1.96
13385356--13385631	40	6.8	40	73	9	146	30	18	19	31	1.96
13385383--13385595	81	2.6	81	81	8	236	28	17	19	34	1.95
13402845--13402966	44	2.8	43	78	11	131	31	25	18	25	1.97
13423913--13423990	28	2.7	30	82	4	88	37	24	21	16	1.94
13424046--13424091	19	2.5	19	92	3	76	36	4	13	45	1.63
13428626--13428656	15	2.1	15	93	0	53	58	0	9	32	1.31
13430300--13430545	44	5.7	43	70	12	159	23	22	23	30	1.99
13430388--13430586	44	4.7	42	69	12	113	25	21	22	30	1.99
13430322--13430610	128	2.3	128	100	0	578	24	21	22	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13430300--13430459	87	1.9	87	82	3	209	24	21	23	30	1.99
13430761--13430909	39	3.7	39	87	6	190	26	20	22	30	1.98
13431140--13431500	87	4.1	88	76	8	340	28	25	16	29	1.96
13431140--13431473	132	2.5	132	83	5	383	27	25	15	30	1.96
13431140--13431500	44	8.2	44	79	8	281	28	25	16	29	1.96
13442952--13443187	115	2.1	115	91	1	384	31	15	18	33	1.93
13443786--13443816	15	2.1	15	93	0	53	58	0	9	32	1.31
13448495--13448556	31	2.1	30	82	17	76	29	17	8	45	1.77
13448709--13448814	25	4.3	25	74	18	96	30	20	21	27	1.98
13448734--13448832	49	2.0	50	94	2	173	32	19	23	25	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136