genome.fa.s10.2.7.7.80.10.50.1000.124.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  124  of  136  ( 16211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42205978--42206020	9	4.8	9	88	0	59	25	6	20	46	1.76
42220441--42220466	2	13.0	2	100	0	52	50	0	0	50	1.00
42221732--42221809	31	2.5	31	77	20	92	37	3	0	58	1.16
42221843--42221895	21	2.4	23	84	9	67	45	1	1	50	1.23
42223600--42223665	33	2.1	32	83	11	82	50	0	3	46	1.16
42228984--42229103	61	2.0	61	93	3	206	30	15	12	40	1.85
42248373--42248409	17	2.2	17	90	0	56	37	5	0	56	1.22
42248590--42248640	25	2.0	26	84	3	68	45	5	7	41	1.57
42249774--42249838	31	2.1	32	85	2	87	24	30	18	26	1.98
42250182--42250243	31	2.0	31	93	6	108	32	9	12	45	1.75
42251185--42251356	76	2.3	76	97	2	328	32	19	19	28	1.96
42252944--42253135	93	2.0	95	97	2	370	53	5	19	21	1.64
42253789--42253856	34	2.0	34	100	0	136	35	2	17	44	1.64
42260761--42260794	17	2.0	17	88	0	50	38	5	8	47	1.59
42272828--42272854	2	13.5	2	100	0	54	48	0	0	51	1.00
42273093--42273146	28	2.0	26	82	10	65	9	16	1	72	1.19
42273537--42273613	29	2.5	31	79	4	86	45	11	15	27	1.81
42277826--42277879	28	2.0	26	82	10	65	9	16	1	72	1.19
42278270--42278346	29	2.5	31	79	4	86	45	11	15	27	1.81
42282926--42282966	18	2.3	18	87	8	57	43	0	0	56	0.99
42286764--42286840	14	5.2	14	71	21	59	67	7	2	22	1.29
42294277--42294312	18	2.1	18	89	5	56	25	0	8	66	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42294270--42294332	27	2.2	28	76	15	67	25	1	9	63	1.34
42296256--42296355	51	2.0	51	93	0	173	41	11	33	15	1.82
42296766--42296825	29	2.1	29	93	0	102	41	8	11	38	1.72
42301461--42301524	27	2.4	27	82	12	78	18	6	10	64	1.46
42302003--42302037	17	2.0	18	88	5	54	34	0	0	65	0.93
42309648--42309706	29	2.0	29	100	0	118	33	6	20	38	1.79
42311427--42311476	21	2.3	23	89	6	77	68	14	2	16	1.31
42311923--42311968	23	2.1	22	84	8	58	28	8	0	63	1.24
42312928--42312959	17	1.9	17	93	6	57	71	0	3	25	1.00
42323645--42323742	47	2.1	47	96	0	178	37	12	15	34	1.85
42325527--42326498	323	3.0	324	96	0	1786	40	13	9	36	1.78
42326728--42326781	19	2.7	19	75	8	54	59	3	0	37	1.15
42331997--42332021	12	2.1	12	100	0	50	40	0	0	60	0.97
42340494--42340530	2	18.5	2	94	0	65	45	0	0	54	1.00
42344796--42344830	3	11.7	3	100	0	70	65	0	34	0	0.93
42346460--42346485	2	13.0	2	100	0	52	0	50	0	50	1.00
42350041--42350069	12	2.3	13	94	5	51	41	0	0	58	0.98
42357016--42357087	21	3.5	20	79	7	63	20	23	16	38	1.92
42359912--42359938	2	13.5	2	100	0	54	0	48	0	51	1.00
42364278--42364353	35	2.1	36	97	2	145	44	0	7	47	1.32
42364291--42364347	18	3.2	18	68	22	57	43	0	7	49	1.29
42369039--42369105	34	2.0	35	82	11	86	62	1	0	35	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42370358--42370448	34	2.7	33	83	10	112	42	0	14	42	1.45
42370517--42370907	126	3.2	124	81	6	465	38	17	16	27	1.91
42373989--42374050	25	2.4	25	76	10	63	53	3	0	43	1.17
42373992--42374182	93	2.1	91	89	3	287	57	4	2	36	1.30
42376264--42376303	11	3.6	11	86	6	55	52	0	25	22	1.47
42382040--42382196	49	3.2	49	98	0	296	42	1	10	45	1.49
42383947--42383991	20	2.3	20	76	3	56	62	0	0	37	0.96
42384493--42384563	34	2.1	34	91	0	115	40	11	39	8	1.71
42390974--42391038	9	6.9	9	75	15	60	60	3	3	33	1.28
42392171--42392297	38	3.3	38	82	4	157	33	13	18	34	1.89
42396843--42396904	32	1.9	32	96	0	115	24	19	19	37	1.94
42402063--42402115	13	4.1	13	76	9	63	35	24	7	32	1.84
42403637--42403680	23	1.9	23	100	0	88	34	25	9	31	1.87
42422946--42422977	16	2.1	16	94	5	57	59	0	3	37	1.13
42423212--42423246	18	1.9	18	88	11	54	68	2	0	28	1.04
42429264--42429298	16	2.2	17	90	10	56	20	11	2	65	1.37
42447452--42447498	15	3.2	15	81	3	60	53	2	0	44	1.12
42462655--42462789	40	3.4	40	72	7	132	28	16	23	31	1.96
42463424--42463448	13	1.9	13	100	0	50	24	0	20	56	1.43
42466808--42467046	117	2.0	118	99	0	471	50	6	3	40	1.44
42467686--42468646	152	6.3	152	85	5	1179	31	9	7	51	1.61
42467681--42468646	305	3.1	301	86	4	1211	31	9	7	51	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42482214--42482249	11	3.5	11	88	11	58	52	0	0	47	1.00
42484325--42484388	20	3.2	20	78	10	67	37	0	3	59	1.13
42484332--42484388	5	11.6	5	75	17	57	40	0	1	57	1.09
42485377--42485460	21	4.0	21	78	4	80	16	20	26	36	1.93
42489420--42489814	197	2.0	198	99	0	783	32	11	14	41	1.81
42493555--42493599	19	2.4	18	82	7	54	40	2	6	51	1.41
42493566--42493612	20	2.4	20	92	3	78	36	0	6	57	1.24
42494201--42494243	2	21.5	2	100	0	86	48	0	0	51	1.00
42497278--42497308	14	2.2	14	100	0	62	64	0	0	35	0.94
42500228--42500271	22	2.0	23	86	4	63	36	11	0	52	1.38
42506957--42506981	5	5.0	5	100	0	50	0	0	20	80	0.72
42508592--42508668	39	2.0	38	89	2	118	35	1	6	57	1.33
42535090--42535154	31	2.1	32	83	11	82	44	0	0	55	0.99
42552226--42552263	20	1.9	20	84	10	51	57	5	5	31	1.43
42552295--42552365	37	1.9	37	91	0	115	45	4	9	40	1.57
42554523--42554558	17	2.1	17	100	0	72	44	19	11	25	1.83
42555943--42555992	25	2.0	25	88	0	73	24	18	16	42	1.89
42558420--42558468	25	1.9	26	84	12	66	63	2	8	26	1.34
42558783--42558842	30	2.0	30	93	0	102	28	18	13	40	1.88
42564188--42564234	17	2.8	17	83	0	58	61	0	0	38	0.96
42570777--42570801	13	1.9	13	100	0	50	56	16	12	16	1.68
42574507--42574582	23	3.3	23	74	17	68	44	0	2	52	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42576559--42576583	10	2.5	10	100	0	50	0	8	0	92	0.40
42577039--42577073	2	17.5	2	100	0	70	48	0	0	51	1.00
42585866--42585910	23	2.0	22	86	4	63	51	35	2	11	1.50
42590437--42590471	17	2.1	17	100	0	70	51	0	0	48	1.00
42590459--42590543	20	4.2	20	73	19	61	30	0	7	62	1.22
42591108--42591184	19	4.0	20	71	11	61	38	0	5	55	1.22
42591150--42591209	19	3.0	21	83	11	65	35	1	3	60	1.23
42591666--42591712	9	4.8	10	77	15	53	31	0	6	61	1.21
42591661--42591731	29	2.4	30	84	11	85	35	1	4	59	1.26
42595765--42595826	20	3.1	20	95	0	106	43	30	6	19	1.76
42595767--42595838	9	7.6	9	82	11	81	40	29	6	23	1.81
42595839--42595951	37	3.1	37	93	1	192	46	15	5	32	1.68
42595862--42595925	20	3.3	20	68	12	62	45	15	4	34	1.67
42595882--42595942	17	3.4	17	68	12	50	50	13	3	32	1.57
42598626--42598662	8	4.5	8	86	6	56	13	37	32	16	1.87
42605712--42605765	20	2.7	21	80	5	58	35	0	9	55	1.32
42606011--42606048	20	1.9	20	88	0	58	23	0	13	63	1.30
42606012--42606056	20	2.2	20	84	0	54	28	0	11	60	1.31
42605685--42606266	291	2.0	291	99	0	1148	44	6	9	40	1.62
42607750--42607809	2	30.0	2	96	0	102	3	46	0	50	1.18
42609308--42609358	17	3.0	17	82	0	57	43	5	17	33	1.73
42610168--42610224	27	2.1	28	80	9	64	45	0	24	29	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42610187--42610222	19	1.9	19	88	5	56	41	0	25	33	1.55
42611945--42612273	152	2.2	152	89	1	498	23	24	32	19	1.97
42617427--42617557	61	2.1	62	91	1	210	31	9	7	51	1.61
42623094--42623119	6	4.3	6	100	0	52	15	30	38	15	1.88
42630691--42630745	27	2.0	27	82	6	67	45	9	5	40	1.59
42630919--42631122	100	2.0	101	99	0	401	40	10	8	40	1.71
42648516--42648598	39	2.2	39	86	6	116	20	19	20	39	1.92
42648516--42648642	45	3.1	39	83	12	125	19	19	19	40	1.91
42648543--42648732	45	4.1	45	82	7	245	20	18	19	42	1.90
42648541--42648752	96	2.2	96	83	4	300	20	19	18	41	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136