genome.fa.s10.2.7.7.80.10.50.1000.106.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  106  of  136  ( 16211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35810775--35810833	21	2.8	21	85	10	68	37	1	3	57	1.25
35812223--35812264	16	2.7	16	88	3	59	38	11	16	33	1.86
35812685--35812718	18	1.9	17	94	5	59	17	35	2	44	1.64
35813108--35813260	26	5.8	26	78	7	121	32	26	15	26	1.95
35844136--35844187	26	2.0	26	100	0	104	34	7	26	30	1.85
35851522--35851567	23	2.0	23	95	0	83	15	17	28	39	1.90
35855117--35855178	31	2.0	31	100	0	124	16	9	29	45	1.79
35856652--35856744	32	2.9	32	95	0	159	25	16	16	41	1.88
35857068--35857181	57	2.0	57	98	0	219	30	8	14	46	1.74
35861887--35861943	28	2.0	28	100	0	114	29	21	21	28	1.98
35864271--35864314	22	2.1	22	87	8	65	40	6	11	40	1.68
35868047--35868123	29	2.6	29	83	4	91	48	12	12	25	1.78
35868409--35868458	24	2.1	23	82	14	57	50	2	2	46	1.24
35871521--35871580	30	2.0	31	86	3	86	26	11	25	36	1.90
35872123--35872166	16	2.8	15	76	10	52	50	0	34	15	1.45
35891091--35891131	21	2.0	21	100	0	82	46	19	0	34	1.50
35911092--35911125	12	2.8	12	90	0	50	14	17	17	50	1.79
35915462--35915603	70	2.0	70	100	0	284	26	18	16	38	1.92
35917158--35917199	20	2.1	20	86	0	57	47	4	4	42	1.45
35918966--35918995	3	10.0	3	100	0	60	33	0	0	66	0.92
35923935--35924008	25	3.0	25	78	9	62	35	18	20	25	1.96
35926925--35927120	50	3.8	50	84	4	230	26	20	30	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35927370--35927408	12	3.2	12	85	0	51	51	5	23	20	1.67
35929035--35929089	25	2.2	25	87	6	76	25	25	16	32	1.96
35929044--35929101	25	2.3	25	82	11	66	27	24	18	29	1.98
35935273--35935305	18	1.9	17	88	11	50	30	18	12	39	1.87
35935809--35935874	28	2.4	28	79	2	80	30	22	25	21	1.99
35936036--35936301	32	8.3	32	80	0	264	38	19	19	22	1.93
35936047--35936301	96	2.7	96	83	0	294	38	19	19	22	1.93
35936305--35936358	26	2.1	26	89	0	81	33	25	24	16	1.96
35936346--35936407	27	2.3	27	84	13	76	35	24	24	16	1.95
35936477--35936532	24	2.3	23	79	8	67	44	23	8	23	1.81
35936576--35936743	27	6.4	27	83	4	184	25	22	20	32	1.97
35936595--35936743	27	5.6	27	83	2	185	25	20	20	34	1.96
35936576--35936743	53	3.2	53	86	4	216	25	22	20	32	1.97
35937976--35938015	12	3.3	12	83	10	55	32	45	0	22	1.53
35942643--35942799	56	2.8	56	89	0	233	43	17	8	31	1.78
35944179--35944217	14	2.7	15	84	11	55	35	2	28	33	1.71
35962414--35962440	14	1.9	14	100	0	54	74	0	11	14	1.08
35966539--35966575	9	4.1	9	96	0	65	29	10	13	45	1.77
35967015--35967054	21	1.9	21	89	0	62	5	12	17	65	1.44
35969117--35969143	7	3.9	7	100	0	54	74	0	0	25	0.83
35969290--35969319	7	4.3	7	100	0	60	70	0	0	30	0.88
35969106--35969458	176	2.0	177	99	0	699	39	14	7	37	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35969712--35969765	27	2.0	27	82	7	65	38	0	11	50	1.38
35970779--35970825	3	15.7	3	95	0	85	65	0	2	31	1.04
35978515--35978751	131	1.8	131	87	1	359	23	21	28	27	1.99
35987065--35987122	20	2.9	19	76	5	62	6	24	22	46	1.76
36010535--36010564	5	6.0	5	92	0	51	56	20	3	20	1.56
36014587--36014865	148	1.9	147	83	2	362	24	26	15	34	1.95
36022170--36022208	14	2.8	14	96	0	69	46	0	28	25	1.53
36030095--36030120	13	2.0	13	100	0	52	23	23	23	30	1.99
36030416--36030456	19	2.1	20	86	4	57	56	2	9	31	1.45
36030753--36030786	16	2.1	16	88	0	50	41	2	20	35	1.68
36040727--36040769	21	2.0	21	91	8	70	0	13	9	76	1.01
36045752--36045795	21	2.2	20	88	12	63	36	0	9	54	1.32
36048142--36048185	22	2.0	22	86	8	63	38	11	0	50	1.39
36048152--36048192	22	1.9	21	85	5	55	43	9	0	46	1.36
36048588--36048618	9	3.4	9	90	0	53	25	12	22	38	1.90
36048672--36048708	9	4.1	9	100	0	74	45	10	10	32	1.74
36052410--36052475	24	2.8	23	71	15	62	60	1	0	37	1.06
36052414--36052451	14	2.6	15	83	8	51	60	0	0	39	0.97
36054465--36054504	20	2.0	20	100	0	80	50	15	15	20	1.79
36062476--36062577	40	2.5	40	93	0	168	39	35	6	18	1.78
36069124--36069215	48	1.9	48	93	0	157	25	22	7	44	1.79
36069379--36069441	26	2.4	26	81	0	72	74	1	1	22	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36069393--36069437	20	2.3	20	88	3	65	75	2	0	22	0.91
36069374--36069441	32	2.1	33	83	8	86	73	2	2	20	1.09
36069391--36069441	6	8.2	6	78	8	57	76	1	0	21	0.88
36072130--36072188	27	2.2	27	81	6	66	25	23	13	37	1.92
36074033--36074101	33	2.1	33	94	0	120	28	13	21	36	1.91
36074820--36075004	25	6.9	25	67	17	104	27	6	12	54	1.62
36074819--36074993	30	6.3	29	72	18	106	26	5	12	54	1.60
36074839--36075042	30	7.2	30	73	12	166	26	5	12	54	1.60
36074957--36075042	21	4.3	19	69	19	59	29	3	12	54	1.54
36074867--36075016	55	2.7	54	75	4	140	26	7	12	53	1.65
36088995--36089034	20	2.0	21	85	5	55	57	20	5	17	1.58
36089280--36089339	31	1.9	31	83	6	77	48	11	1	38	1.50
36098379--36098441	26	2.3	27	78	8	74	38	34	14	12	1.84
36102653--36102762	17	6.1	17	68	12	67	31	2	14	50	1.57
36102669--36102757	17	4.8	19	71	13	69	32	3	15	48	1.62
36102648--36102757	37	3.0	37	93	0	184	32	3	15	48	1.63
36102758--36102837	9	8.6	9	80	13	90	23	10	28	37	1.87
36102761--36102839	20	4.1	20	85	8	110	21	10	29	39	1.86
36109007--36109069	30	2.1	30	94	5	110	25	3	12	58	1.49
36112292--36112316	5	5.0	5	100	0	50	0	20	0	80	0.72
36115634--36115704	35	2.0	35	94	0	124	32	2	16	47	1.61
36117590--36117654	21	3.2	21	63	20	57	13	26	3	56	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36125673--36125747	37	2.0	37	84	5	98	25	14	14	45	1.83
36141621--36141675	28	2.0	28	88	0	83	30	27	12	29	1.93
36141630--36141684	28	2.0	28	88	0	83	30	29	14	25	1.95
36153752--36153916	43	3.9	42	79	12	149	30	27	18	23	1.97
36153752--36153916	86	1.9	84	82	10	201	30	27	18	23	1.97
36160006--36160040	16	2.1	17	89	5	54	42	0	45	11	1.40
36164941--36164978	20	1.9	20	89	10	60	60	5	0	34	1.19
36174267--36174338	36	2.0	36	100	0	144	50	11	11	27	1.72
36181149--36181184	18	2.0	18	100	0	72	22	16	0	61	1.35
36181152--36181197	18	2.6	18	86	6	58	21	19	0	58	1.39
36182458--36182572	44	2.7	44	81	5	119	31	28	17	22	1.97
36184684--36184729	24	1.9	24	86	8	67	60	2	4	32	1.28
36184684--36184737	24	2.2	24	83	9	65	61	1	7	29	1.34
36194582--36194646	20	3.0	22	75	8	80	10	35	24	29	1.89
36194961--36195000	21	1.9	21	100	0	80	22	15	10	52	1.71
36200268--36200330	31	2.0	31	100	0	126	9	34	6	49	1.61
36204677--36204716	20	2.0	20	90	5	62	35	2	0	62	1.09
36211207--36211231	4	6.2	4	100	0	50	24	0	24	52	1.48
36213895--36213930	17	2.1	17	94	0	63	38	19	2	38	1.66
36214636--36214676	20	2.0	20	100	0	82	34	14	19	31	1.92
36217305--36217348	19	2.3	20	80	7	56	43	0	4	52	1.22
36217819--36217918	40	2.5	40	73	16	98	41	10	11	38	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36220875--36220916	19	2.2	19	100	0	84	50	19	4	26	1.67
36222007--36222044	6	6.3	6	100	0	76	15	0	0	84	0.63
36222041--36222087	6	7.8	6	97	0	85	34	12	0	53	1.39
36222010--36222106	6	16.2	6	88	8	63	25	6	2	65	1.26
36222082--36222112	9	3.4	9	100	0	62	22	0	9	67	1.19
36227035--36227445	205	2.0	206	99	0	815	43	10	11	34	1.76
36228315--36228355	17	2.4	17	91	4	64	34	0	0	65	0.93
36230019--36230077	30	2.0	29	84	12	77	71	8	6	13	1.30
36230851--36230910	30	2.0	29	90	3	93	50	0	11	38	1.39
36231154--36231204	23	2.2	23	82	0	57	60	0	35	3	1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136