genome.fa.s10.2.7.7.80.10.50.1000.129.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  129  of  136  ( 16211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44394934--44395003	18	3.9	18	84	0	77	60	10	7	22	1.53
44394925--44394997	12	6.1	12	88	0	83	58	10	6	23	1.55
44395447--44395486	21	1.9	21	94	0	71	22	30	20	27	1.98
44395726--44395811	31	2.8	31	84	8	79	37	13	8	40	1.75
44395759--44395820	31	2.1	28	82	11	72	30	14	6	48	1.69
44395739--44395811	31	2.4	31	86	9	96	36	16	6	39	1.75
44425312--44425352	2	20.5	2	84	0	55	46	2	2	48	1.28
44426147--44426190	4	11.0	4	90	9	72	47	25	2	25	1.63
44433445--44433482	18	2.1	18	90	5	58	68	0	2	28	1.03
44448208--44448257	26	1.9	26	87	0	73	48	8	8	36	1.62
44449170--44449222	28	1.9	28	92	3	90	47	11	20	20	1.81
44452985--44453011	3	9.0	3	100	0	54	66	0	33	0	0.92
44457060--44457124	31	2.1	31	100	0	130	27	13	18	40	1.89
44464039--44464082	21	2.0	23	86	8	65	38	0	4	56	1.20
44464039--44464082	22	2.0	22	82	8	54	38	0	4	56	1.20
44465635--44465660	5	5.2	5	100	0	52	42	19	19	19	1.90
44469320--44469355	18	2.0	18	88	0	54	27	2	8	61	1.39
44475985--44476025	3	13.7	3	100	0	82	34	0	0	65	0.93
44476099--44476161	32	2.0	32	83	0	81	46	4	6	42	1.50
44476888--44477084	102	1.9	101	87	3	288	43	2	7	46	1.45
44479208--44479240	16	2.1	16	94	0	57	45	0	0	54	0.99
44491468--44491503	2	18.5	2	88	5	56	47	0	2	50	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44498545--44498583	20	2.0	20	89	0	60	35	0	0	64	0.94
44507401--44507699	158	1.9	156	85	4	411	33	21	22	22	1.98
44512320--44512345	13	2.0	13	100	0	52	30	7	15	46	1.74
44540196--44540229	15	2.3	15	90	10	52	26	0	0	73	0.83
44540192--44540229	14	2.7	14	88	8	51	26	0	0	73	0.83
44541399--44541438	20	2.1	20	86	9	57	20	2	5	72	1.15
44541411--44541446	12	3.0	12	88	11	56	22	0	2	75	0.94
44546244--44546293	26	2.0	25	84	7	66	18	14	22	46	1.84
44553903--44554095	58	3.2	58	83	10	235	34	10	25	29	1.90
44554005--44554043	7	5.6	7	90	0	51	38	7	33	20	1.81
44553947--44554095	64	2.3	64	90	1	235	36	10	25	27	1.89
44556627--44556663	3	12.7	3	94	5	67	35	0	0	64	0.94
44560164--44560198	14	2.5	14	90	0	52	40	5	0	54	1.24
44560172--44560199	14	2.0	14	100	0	56	35	7	0	57	1.26
44566416--44566448	6	5.5	6	100	0	66	51	15	0	33	1.43
44569563--44569603	21	2.0	21	90	0	64	24	17	26	31	1.97
44570511--44570604	49	1.9	49	95	0	170	43	14	15	25	1.86
44572901--44572933	6	5.5	6	100	0	66	51	15	0	33	1.43
44576048--44576088	21	2.0	21	90	0	64	24	17	26	31	1.97
44576996--44577089	49	1.9	49	95	0	170	43	14	15	25	1.86
44587676--44587862	93	2.0	93	100	0	374	38	6	8	46	1.60
44589043--44589093	23	2.2	23	89	0	75	41	21	7	29	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44594592--44594638	18	2.6	18	89	0	67	14	34	36	14	1.88
44596109--44596258	21	7.1	21	70	1	104	44	18	22	15	1.87
44596109--44596262	42	3.7	42	84	2	177	44	18	22	14	1.86
44599998--44600110	56	2.0	56	94	0	199	26	15	28	29	1.96
44607511--44607584	25	3.0	25	72	7	78	33	21	24	20	1.97
44613398--44613431	7	5.0	7	85	7	52	29	0	2	67	1.05
44613398--44613431	13	2.5	14	85	4	52	29	0	2	67	1.05
44616049--44616115	22	3.1	22	80	2	82	64	1	5	28	1.26
44616049--44616094	19	2.4	19	81	0	56	67	2	4	26	1.21
44616049--44616100	3	17.7	3	80	7	54	67	1	3	26	1.18
44626782--44626814	17	1.9	17	93	0	57	63	0	0	36	0.95
44627396--44627444	18	2.6	19	78	15	57	18	6	14	61	1.53
44629270--44629347	26	3.2	26	59	23	60	57	6	16	19	1.60
44630456--44630515	27	2.2	27	96	0	111	41	8	0	50	1.33
44631156--44631214	19	3.2	19	82	4	84	37	13	0	49	1.43
44631552--44631608	29	1.9	29	92	3	96	40	1	5	52	1.34
44636383--44636425	22	2.0	22	81	9	52	20	4	37	37	1.74
44636624--44636677	21	2.6	21	80	11	65	14	3	5	75	1.12
44637291--44637330	19	2.0	20	86	13	57	32	0	5	62	1.17
44637291--44637342	19	2.8	17	75	16	50	34	0	3	61	1.14
44641070--44641152	40	2.1	40	88	0	121	27	7	12	53	1.64
44649905--44650036	44	3.0	44	100	0	264	40	13	11	34	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44659213--44659246	16	2.1	16	88	0	50	26	26	0	47	1.53
44660121--44660158	3	12.7	3	100	0	76	0	34	0	65	0.93
44676236--44676286	15	3.5	15	71	15	52	23	13	13	49	1.78
44678821--44678850	7	4.4	7	95	4	53	0	13	0	86	0.57
44689297--44689327	7	4.4	7	100	0	62	12	29	25	32	1.93
44690238--44690287	25	2.0	25	85	14	68	70	0	22	8	1.13
44690454--44690478	7	3.6	7	100	0	50	36	0	0	64	0.94
44690876--44690909	16	2.1	16	100	0	68	11	0	17	70	1.16
44693133--44693204	36	2.0	36	100	0	144	19	25	22	33	1.97
44724001--44724049	25	2.0	25	88	8	73	65	6	2	26	1.27
44735152--44735178	2	13.5	2	100	0	54	48	0	51	0	1.00
44737087--44737158	36	2.0	36	100	0	144	36	11	8	44	1.70
44739257--44739310	27	2.0	27	100	0	108	40	3	3	51	1.37
44741250--44741349	50	2.0	50	92	0	164	36	20	7	37	1.79
44741402--44741474	38	2.0	36	84	10	94	57	0	4	38	1.18
44741698--44741737	19	2.1	20	86	9	57	27	2	2	67	1.16
44741698--44741784	9	9.4	9	70	11	52	28	3	2	65	1.21
44741701--44741803	20	5.4	19	71	9	66	29	3	1	65	1.21
44741709--44741785	28	2.7	28	77	2	73	29	2	2	64	1.20
44741744--44741822	28	2.8	27	79	9	79	27	3	1	67	1.16
44741888--44742065	91	2.0	91	82	6	218	35	8	17	37	1.81
44743275--44743428	40	3.8	40	99	0	299	29	18	24	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44743632--44743674	7	6.1	7	97	0	68	34	13	13	37	1.85
44743615--44743681	7	9.6	7	86	4	64	32	13	14	38	1.86
44743615--44743674	21	2.9	21	82	5	77	33	13	13	40	1.83
44744702--44744739	12	3.0	13	85	14	53	44	0	0	55	0.99
44750140--44750208	26	2.7	26	88	4	104	17	23	21	37	1.94
44750135--44750281	26	5.9	24	75	11	84	20	23	21	34	1.96
44756994--44757029	2	18.0	2	100	0	72	0	50	0	50	1.00
44757501--44757537	2	18.5	2	100	0	74	0	48	0	51	1.00
44758910--44758948	17	2.3	17	100	0	78	20	7	30	41	1.80
44764941--44765024	33	2.5	33	76	0	78	16	60	2	20	1.46
44764996--44765025	15	2.0	15	93	0	51	13	63	0	23	1.29
44791490--44791535	21	2.2	21	88	3	67	54	4	0	41	1.20
44809795--44809860	10	6.7	9	72	16	51	63	3	1	31	1.19
44809806--44809860	21	2.7	21	85	2	67	63	1	1	32	1.15
44812795--44812828	18	1.9	17	94	5	59	0	29	11	58	1.33
44814820--44815146	95	3.4	94	89	6	444	33	22	14	29	1.94
44817102--44817153	18	2.7	19	73	11	52	59	1	3	34	1.27
44827785--44827861	39	2.0	39	89	0	118	29	16	18	35	1.93
44836697--44836733	1	37.0	1	94	0	65	2	0	0	97	0.18
44840546--44840721	87	2.0	87	80	2	192	36	22	8	32	1.84
44840730--44840782	18	2.9	18	83	10	63	56	0	3	39	1.17
44840734--44840790	20	2.9	20	80	12	64	57	0	1	40	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44840776--44840817	18	2.5	17	88	7	59	52	0	0	47	1.00
44840753--44840816	25	2.4	27	82	5	78	54	0	0	45	0.99
44841372--44841404	16	2.1	16	100	0	66	42	6	0	51	1.26
44841925--44841970	24	2.0	24	83	12	60	36	4	19	39	1.72
44843290--44843534	2	122.5	2	100	0	490	50	0	0	49	1.00
44844765--44844803	19	2.1	19	85	9	53	51	0	0	48	1.00
44847141--44847177	18	2.0	19	89	5	58	21	2	48	27	1.63
44848764--44848791	3	9.3	3	100	0	56	32	0	0	67	0.91
44852704--44852750	17	2.8	17	87	6	60	25	4	6	63	1.36
44857947--44857983	18	2.1	17	90	5	56	51	0	0	48	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136