Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  131  of  136  ( 16211 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45229820--45230024
100
2.0
101
97
1
385
36
12
10
40
1.77
45230036--45230060
13
1.9
13
100
0
50
72
4
0
24
1.02
45233642--45233780
31
4.6
30
80
9
115
42
0
5
51
1.28
45236322--45236359
19
2.1
18
85
14
51
28
5
0
65
1.14
45242617--45242651
17
2.1
17
88
0
52
51
0
14
34
1.42
45246292--45246329
19
1.9
19
89
5
58
28
15
10
44
1.80
45257826--45257872
22
2.1
22
96
0
85
51
0
0
48
1.00
45258633--45258663
8
3.9
8
100
0
62
25
0
0
74
0.82
45260734--45260795
26
2.4
26
88
0
97
40
9
0
50
1.35
45274567--45274629
28
2.3
27
80
2
72
60
6
3
30
1.37
45275240--45275273
14
2.4
14
90
5
50
64
2
2
29
1.22
45278519--45278569
21
2.5
21
83
3
68
60
1
0
37
1.08
45284045--45284095
24
2.1
24
88
0
75
25
11
33
29
1.91
45285093--45285145
26
2.0
27
85
10
74
43
0
5
50
1.25
45288294--45288335
20
2.1
20
82
8
50
50
2
0
47
1.14
45293793--45294189
216
1.9
208
80
10
455
28
13
25
32
1.94
45296509--45296551
21
2.1
20
86
4
59
48
2
0
48
1.14
45305606--45305674
35
2.0
35
97
0
129
31
30
20
17
1.95
45309673--45309745
20
3.7
20
70
26
57
35
4
0
60
1.16
45309685--45309734
9
5.4
9
73
21
50
38
2
0
60
1.09
45309684--45309746
20
3.3
20
75
16
62
38
3
0
58
1.14
45310025--45310099
32
2.4
32
81
14
95
38
2
5
53
1.38
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45310025--45310122
26
3.4
28
77
18
103
35
3
4
57
1.33
45310092--45310151
17
3.4
17
80
13
59
31
1
1
65
1.13
45310247--45310311
27
2.4
28
82
10
89
35
1
0
63
1.04
45310225--45310310
10
9.2
9
68
20
52
36
1
1
61
1.11
45310225--45310283
10
6.1
10
75
15
61
37
0
1
61
1.07
45310224--45310279
19
2.9
19
84
7
78
37
0
1
60
1.07
45310409--45310478
36
1.9
36
97
0
131
41
17
21
20
1.90
45317875--45317900
11
2.4
11
100
0
52
53
0
7
38
1.30
45327506--45327561
1
56.0
1
85
0
76
92
0
7
0
0.37
45340498--45340543
23
2.0
23
95
0
83
36
30
23
8
1.85
45342534--45342772
50
4.6
50
83
5
255
21
28
22
27
1.99
45342533--45342779
100
2.4
105
83
6
306
21
28
22
27
1.99
45343120--45343177
30
1.9
31
82
6
75
29
22
5
43
1.75
45345637--45345670
6
5.7
6
96
0
50
70
0
5
23
1.09
45345674--45345703
2
15.0
2
100
0
60
50
0
0
50
1.00
45353038--45353092
15
3.4
15
79
18
65
41
7
20
30
1.79
45364448--45364490
2
21.5
2
85
0
59
46
0
2
51
1.13
45366162--45366190
2
14.5
2
100
0
58
48
0
0
51
1.00
45366607--45366658
22
2.2
24
86
10
81
32
0
3
63
1.12
45378115--45378168
24
2.2
25
78
15
60
33
1
0
64
1.04
45382435--45382469
6
5.8
6
100
0
70
85
0
14
0
0.59
45387588--45387656
19
3.6
19
81
16
81
39
0
5
55
1.24
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45387589--45387656
20
3.5
19
84
13
70
38
0
5
55
1.24
45393529--45393558
16
1.9
15
93
6
51
30
0
16
53
1.44
45396706--45396870
21
7.9
21
75
6
120
17
20
18
44
1.87
45396741--45396876
42
3.2
42
85
3
175
16
19
19
44
1.86
45396704--45396840
63
2.2
61
81
6
166
16
18
18
45
1.86
45398890--45399172
141
2.0
142
99
0
559
41
4
7
45
1.54
45416139--45416243
52
2.0
52
100
0
210
37
13
13
36
1.84
45421992--45422033
18
2.3
18
88
8
59
23
11
2
61
1.42
45424066--45424092
2
13.5
2
100
0
54
0
0
48
51
1.00
45424923--45424953
14
2.2
14
94
0
53
48
9
0
41
1.36
45428338--45428383
25
1.9
24
86
8
67
60
6
0
32
1.22
45431924--45432009
22
3.8
22
80
10
84
38
18
25
17
1.92
45431943--45432018
25
3.2
25
83
5
95
39
19
23
17
1.92
45432745--45432801
26
2.2
26
84
9
71
0
29
3
66
1.08
45432894--45432936
23
2.0
22
86
9
61
44
6
4
44
1.52
45443097--45443140
20
2.1
21
87
8
63
47
0
0
52
1.00
45445422--45445446
13
1.9
13
100
0
50
0
96
4
0
0.24
45445421--45445447
14
1.9
14
100
0
54
0
96
3
0
0.23
45447933--45447962
3
10.0
3
100
0
60
33
0
0
66
0.92
45456467--45456513
18
2.4
21
79
10
55
4
23
0
72
1.02
45457611--45457642
15
2.1
16
94
5
57
65
9
0
25
1.22
45462115--45462172
14
4.1
14
77
16
57
51
1
3
43
1.28
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45462108--45462166
30
2.0
30
90
6
93
52
1
1
44
1.21
45464763--45464788
3
8.7
3
100
0
52
0
30
0
69
0.89
45466584--45466616
16
1.9
18
88
11
52
45
6
3
45
1.43
45472376--45472418
17
2.5
18
81
11
54
46
2
0
51
1.13
45472361--45472566
101
2.0
102
98
1
396
39
5
11
42
1.65
45472477--45472519
17
2.5
18
81
11
54
46
2
0
51
1.13
45473478--45473550
35
2.0
36
82
12
87
61
5
5
27
1.40
45478771--45478823
22
2.4
22
75
6
54
50
3
3
41
1.38
45478733--45478904
86
2.0
86
98
0
335
44
5
10
38
1.63
45490057--45490087
2
16.0
2
93
6
55
51
0
0
48
1.00
45491892--45491923
4
7.8
4
93
6
55
75
0
25
0
0.81
45501101--45501154
27
1.9
28
85
7
74
33
1
1
62
1.16
45501212--45501273
27
2.3
27
82
0
79
22
27
30
19
1.98
45502288--45502369
33
2.5
33
80
9
87
24
10
45
19
1.82
45505523--45505568
20
2.3
20
81
3
58
0
30
0
69
0.89
45505720--45505792
27
2.7
27
89
0
110
15
31
27
26
1.95
45505880--45505925
22
2.1
22
84
11
60
56
2
0
41
1.11
45505855--45505924
25
2.8
25
72
20
67
58
1
1
38
1.16
45506650--45506696
19
2.6
17
83
12
51
70
14
2
12
1.26
45509417--45509460
23
1.9
23
85
0
61
70
6
2
20
1.21
45516425--45516601
69
2.6
69
92
0
300
37
20
12
29
1.90
45517558--45517595
3
12.7
3
100
0
76
68
0
0
31
0.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45517627--45517660
3
11.3
3
100
0
68
67
0
0
32
0.91
45517550--45517683
65
2.0
66
98
1
261
59
2
7
29
1.40
45519081--45519312
84
2.8
84
93
0
392
29
12
15
42
1.84
45521501--45521550
26
1.9
26
87
0
73
16
12
8
64
1.49
45525806--45525860
25
2.2
24
87
3
83
14
25
21
38
1.92
45529420--45529486
22
3.0
22
82
0
80
41
17
23
16
1.89
45530891--45530929
14
2.8
14
84
0
51
35
12
23
28
1.91
45531527--45531551
6
4.2
6
100
0
50
84
0
0
16
0.63
45538019--45538065
21
2.2
21
81
7
60
44
4
6
44
1.49
45539486--45539553
30
2.3
31
87
7
104
29
1
0
69
0.98
45544151--45544175
6
4.2
6
100
0
50
84
0
0
16
0.63
45546216--45546294
39
2.0
39
95
0
140
30
11
26
31
1.91
45549513--45549866
84
4.2
84
97
2
674
28
29
16
24
1.97
45549483--45549866
43
9.1
42
80
5
391
29
29
16
24
1.97
45555399--45555435
17
2.1
19
85
10
51
37
0
0
62
0.96
45555448--45555476
2
14.5
2
100
0
58
51
0
0
48
1.00
45564231--45564268
15
2.6
15
83
4
51
44
15
7
31
1.75
45564407--45564444
16
2.3
17
86
4
51
55
31
5
7
1.51
45575331--45575400
28
2.6
26
76
12
70
37
1
2
58
1.22
45575364--45575400
16
2.3
16
90
0
56
40
2
0
56
1.13
45575331--45575410
27
2.9
27
75
19
67
37
1
2
58
1.19
45578322--45578365
22
2.0
22
90
0
70
15
27
4
52
1.63
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45584645--45584740
45
2.2
44
85
9
124
35
28
5
31
1.79
45584726--45584758
16
2.1
16
94
0
57
24
30
6
39
1.79
45598835--45598865
2
15.5
2
93
0
53
48
3
0
48
1.17
45601615--45601679
26
2.4
28
84
5
80
47
29
3
20
1.65
45607729--45607779
21
2.4
21
83
9
59
43
5
0
50
1.26
45610237--45610384
30
4.9
30
97
0
269
19
33
26
20
1.97
45611317--45611378
24
2.5
25
74
7
65
37
24
20
17
1.94
45611953--45612003
21
2.4
21
83
6
59
39
17
0
43
1.49
45616849--45616873
2
12.5
2
100
0
50
48
0
0
52
1.00
45620132--45620346
107
2.0
108
99
0
423
44
4
10
40
1.59

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136