genome.fa.s10.2.7.7.80.10.50.1000.46.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  46  of  136  ( 16211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15218417--15218677	125	2.1	126	98	0	506	35	6	12	45	1.69
15219968--15219999	3	10.7	3	100	0	64	65	0	34	0	0.93
15222677--15222723	22	2.2	22	84	3	60	21	8	17	53	1.70
15228847--15228888	22	2.0	21	85	4	57	52	14	14	19	1.75
15241005--15241076	31	2.6	27	82	10	83	36	15	15	33	1.89
15241250--15241306	28	2.0	28	96	0	105	24	12	7	56	1.61
15246268--15246337	4	17.5	4	100	0	140	25	0	24	50	1.50
15247086--15247126	10	3.9	11	78	9	50	26	0	14	58	1.37
15250721--15250752	2	16.0	2	93	0	55	46	0	0	53	1.00
15252035--15252180	41	3.6	41	84	0	175	26	27	20	26	1.99
15261864--15261902	19	2.1	19	90	0	60	41	5	17	35	1.72
15274087--15274181	28	3.4	28	86	0	145	27	24	22	26	2.00
15274339--15274400	28	2.2	28	82	0	70	35	17	14	32	1.90
15276132--15276167	16	2.2	17	90	5	56	47	0	11	41	1.39
15282971--15283214	43	5.7	41	77	6	166	39	18	17	25	1.91
15283018--15283336	86	3.7	86	83	2	363	42	20	15	21	1.88
15283018--15283341	43	7.6	43	82	1	328	43	19	15	21	1.88
15286500--15286752	70	3.6	69	87	2	292	39	18	10	30	1.85
15292653--15292696	12	3.7	12	100	0	88	40	27	25	6	1.80
15296463--15296495	16	2.1	16	94	0	57	6	15	15	63	1.49
15298743--15298910	47	3.6	45	70	19	132	45	2	3	47	1.35
15298669--15298876	91	2.3	91	89	0	317	46	3	3	46	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15298690--15298851	44	3.6	43	69	19	116	45	1	3	48	1.30
15298689--15298765	28	2.8	28	73	9	52	42	1	3	51	1.28
15299026--15299068	15	2.8	16	79	10	54	44	0	2	53	1.13
15299039--15299092	12	4.5	12	70	25	51	46	0	1	51	1.11
15299034--15299097	21	3.3	21	67	24	68	45	0	1	53	1.10
15299032--15299113	36	2.3	36	93	2	139	42	0	2	54	1.13
15298921--15299217	153	1.9	155	91	3	483	43	2	4	50	1.35
15299166--15299200	18	2.0	17	88	5	52	45	0	0	54	0.99
15299346--15299446	44	2.4	41	76	13	107	32	27	6	32	1.83
15299434--15299514	16	5.4	16	82	14	91	30	37	0	32	1.58
15299432--15299493	27	2.3	27	94	0	106	25	38	0	35	1.56
15305838--15305870	16	2.1	16	94	0	57	63	15	15	6	1.49
15317276--15317317	15	2.9	14	83	13	50	19	4	2	73	1.12
15330094--15330118	2	12.5	2	100	0	50	52	0	48	0	1.00
15334771--15334829	31	1.9	31	89	0	91	25	10	8	55	1.61
15335170--15335199	12	2.5	12	94	0	51	80	0	20	0	0.72
15336689--15336748	20	3.0	20	73	9	59	26	13	11	48	1.76
15356820--15356932	61	1.9	57	82	10	140	41	14	16	27	1.87
15356669--15356872	112	1.8	110	83	4	241	37	15	15	31	1.89
15360683--15360765	29	2.8	29	76	7	78	38	1	9	50	1.43
15376065--15376140	30	2.5	30	87	4	100	34	23	3	38	1.74
15376756--15376805	15	3.4	15	86	10	59	76	0	24	0	0.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15376750--15376798	13	3.8	13	84	10	57	75	0	24	0	0.80
15376750--15376806	21	2.7	20	81	10	60	75	0	24	0	0.80
15376751--15376808	13	4.8	12	80	17	50	75	0	24	0	0.80
15376748--15376801	28	2.0	27	85	3	72	74	0	25	0	0.83
15376865--15376930	32	2.0	33	82	11	82	57	18	16	7	1.62
15376975--15377012	20	1.9	20	88	0	58	18	47	26	7	1.76
15377099--15377135	9	4.0	9	86	6	56	83	0	16	0	0.64
15377101--15377142	18	2.3	18	83	4	50	85	2	11	0	0.68
15377626--15377969	39	9.3	34	73	15	169	34	11	10	44	1.75
15377626--15378018	18	21.3	18	69	19	154	34	10	11	43	1.75
15377697--15377912	39	5.7	38	79	11	189	34	11	10	43	1.75
15377731--15377949	77	2.9	75	79	10	237	35	10	11	42	1.76
15377897--15378018	38	3.3	35	79	12	120	33	12	13	40	1.81
15377883--15378003	56	2.2	54	82	11	140	33	11	13	42	1.80
15379060--15379084	4	6.2	4	100	0	50	24	24	0	52	1.48
15383920--15384599	75	9.1	75	88	5	946	27	15	21	35	1.94
15384951--15385028	30	2.6	30	85	4	95	33	26	3	35	1.75
15384974--15385044	30	2.4	30	82	0	79	32	21	4	42	1.72
15385406--15385450	14	3.2	14	78	12	56	22	53	15	8	1.69
15385624--15385686	13	4.8	13	76	16	58	77	1	20	0	0.85
15385624--15385686	26	2.5	27	80	12	80	77	1	20	0	0.85
15385835--15385900	20	3.5	17	73	17	51	21	39	27	12	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15386558--15386856	17	16.3	17	69	20	135	33	11	11	44	1.76
15386627--15386722	18	5.2	18	72	15	72	30	11	11	46	1.75
15386574--15386801	37	6.1	36	75	11	165	33	11	10	43	1.76
15386737--15386856	19	6.5	18	71	16	77	33	11	13	41	1.80
15386540--15386822	19	15.2	19	69	17	159	32	11	11	44	1.76
15386735--15386856	56	2.2	54	82	10	140	32	11	13	41	1.81
15389074--15389121	23	2.0	23	88	4	69	37	8	0	54	1.31
15389194--15389885	345	2.0	346	99	0	1377	36	10	7	46	1.65
15390241--15390279	14	2.8	14	88	0	60	41	10	17	30	1.83
15390908--15390971	27	2.4	27	97	0	119	42	10	0	46	1.39
15391021--15391097	27	2.9	27	92	0	127	27	23	29	19	1.98
15392175--15392251	27	2.9	27	90	0	127	20	31	22	25	1.98
15392314--15392377	28	2.4	28	94	5	114	48	0	10	40	1.38
15393044--15393076	10	3.4	10	83	8	50	75	0	0	24	0.80
15395128--15395170	21	2.1	20	86	4	59	34	9	9	46	1.68
15396578--15396674	6	16.2	6	86	0	68	42	52	1	4	1.27
15396578--15396664	18	4.8	18	84	0	84	41	55	1	2	1.20
15401765--15401806	22	1.9	22	95	0	75	45	0	14	40	1.45
15415140--15415175	17	2.1	17	94	0	63	52	8	16	22	1.70
15416059--15416312	94	2.7	94	82	1	276	29	19	19	31	1.97
15416097--15416257	50	3.3	50	69	13	147	31	19	19	29	1.97
15415967--15416491	44	11.6	45	68	15	226	29	20	19	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15415998--15416436	232	1.9	231	81	4	535	29	21	18	30	1.97
15416172--15416553	136	2.8	138	81	2	448	28	20	19	31	1.97
15421054--15421114	17	3.4	17	70	12	59	31	3	13	52	1.56
15421052--15421123	37	1.9	37	100	0	144	31	5	13	48	1.66
15431785--15431814	2	15.0	2	92	0	51	46	0	0	53	1.00
15432025--15432072	23	2.1	23	84	7	62	33	0	0	66	0.92
15435947--15435989	12	3.5	12	79	14	52	72	0	6	20	1.08
15436666--15436728	28	2.2	28	80	5	74	28	17	3	50	1.61
15439470--15439514	3	15.0	3	100	0	90	33	0	0	66	0.92
15445959--15445993	18	2.0	18	88	5	54	37	0	5	57	1.23
15445924--15446047	44	2.8	44	92	1	196	34	8	4	51	1.54
15446003--15446037	18	2.0	18	88	5	54	37	0	5	57	1.23
15446024--15446070	23	2.0	24	91	4	78	25	14	8	51	1.71
15445980--15446114	67	2.0	68	98	1	263	31	10	5	51	1.60
15446070--15446104	18	2.0	18	88	5	54	37	0	5	57	1.23
15448996--15449021	3	8.7	3	100	0	52	0	30	0	69	0.89
15454010--15454414	202	2.0	203	99	0	803	42	10	9	36	1.72
15456174--15456260	29	3.1	29	69	14	74	54	4	3	37	1.38
15456174--15456260	27	3.1	30	69	22	73	54	4	3	37	1.38
15456507--15456535	2	14.5	2	100	0	58	51	0	0	48	1.00
15458658--15458732	10	7.8	9	70	24	55	56	0	4	40	1.18
15458793--15458870	32	2.4	33	85	4	97	53	14	3	28	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15460134--15460386	126	2.0	126	100	0	506	35	14	10	39	1.80
15461723--15461786	18	3.6	18	91	4	103	31	14	12	42	1.82
15462212--15462413	76	2.8	73	86	5	248	30	5	12	51	1.63
15462271--15462421	76	2.0	75	96	1	275	31	6	12	49	1.67
15472082--15472127	6	7.7	6	95	0	65	8	4	34	52	1.52
15474151--15474399	124	2.0	125	99	0	491	42	3	11	43	1.56
15475996--15476035	18	2.2	18	100	0	80	30	15	20	35	1.93
15476312--15476438	58	2.2	58	88	2	184	37	11	19	31	1.87
15477070--15477104	14	2.5	13	86	13	52	74	0	0	25	0.82
15477454--15477488	14	2.5	13	86	13	52	74	0	0	25	0.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136