genome.fa.s10.2.7.7.80.10.50.1000.91.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  91  of  136  ( 16211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30327019--30327063	19	2.3	20	85	11	58	40	2	0	57	1.11
30352147--30352184	16	2.4	16	100	0	76	36	39	0	23	1.55
30357923--30357956	17	2.0	17	88	0	50	50	0	2	47	1.16
30358562--30358606	19	2.4	19	88	7	65	40	0	2	57	1.11
30358588--30358656	25	2.8	24	76	12	68	36	1	2	59	1.21
30358612--30358649	17	2.3	16	83	16	51	28	2	2	65	1.19
30358653--30358691	21	1.9	21	84	5	53	28	2	2	66	1.18
30365836--30365889	4	13.5	4	100	0	108	50	24	0	25	1.50
30381734--30381936	50	4.1	49	71	3	136	23	24	22	29	1.99
30381734--30381936	100	2.0	100	87	3	293	23	24	22	29	1.99
30383951--30383979	7	4.1	7	100	0	58	0	13	0	86	0.58
30403543--30403580	16	2.3	17	86	4	51	39	0	0	60	0.97
30405385--30405424	13	2.9	14	81	11	55	35	0	0	65	0.93
30405293--30405577	140	2.0	141	99	0	563	37	9	5	46	1.61
30405525--30405564	13	2.9	14	81	11	55	35	0	0	65	0.93
30406535--30406561	7	3.9	7	100	0	54	59	0	0	40	0.98
30411201--30411254	24	2.2	25	90	6	85	46	12	9	31	1.74
30415215--30415260	14	3.3	14	93	0	83	41	0	2	56	1.11
30415382--30415432	3	16.7	3	91	4	84	37	0	0	62	0.95
30416577--30416641	21	3.1	21	88	2	96	15	24	26	33	1.95
30420741--30420781	7	5.9	7	100	0	82	58	0	0	41	0.98
30424747--30424773	12	2.2	12	100	0	54	44	7	14	33	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30429106--30429139	13	2.6	14	86	13	54	32	17	5	44	1.73
30434944--30434972	14	2.1	14	100	0	58	41	6	0	51	1.28
30440912--30440952	20	2.0	21	85	4	57	24	9	19	46	1.80
30460887--30460958	27	2.7	27	88	0	90	16	23	16	43	1.88
30480144--30480187	23	1.9	23	90	9	72	36	0	4	59	1.18
30480172--30480231	31	2.0	31	87	6	88	53	0	3	43	1.17
30480735--30480785	23	2.3	22	83	10	59	49	0	3	47	1.20
30491575--30491610	19	1.9	19	88	5	56	36	0	2	61	1.11
30496664--30496717	18	2.9	20	76	15	62	18	5	7	68	1.33
30497355--30497402	25	1.9	25	87	8	71	12	6	4	77	1.11
30497620--30497687	26	2.6	27	81	6	77	42	5	4	47	1.48
30505939--30505984	13	3.5	13	80	13	58	63	0	19	17	1.32
30507261--30508202	44	21.3	44	78	6	864	30	13	22	33	1.93
30507262--30508202	133	7.1	132	86	2	1048	30	13	22	33	1.93
30507262--30508202	177	5.3	176	80	4	914	30	13	22	33	1.93
30508060--30508228	89	1.9	89	85	0	230	29	14	23	32	1.94
30509088--30509132	17	2.6	18	82	3	56	15	4	2	77	1.02
30509303--30509370	26	2.6	27	81	6	77	42	5	4	47	1.48
30509630--30509656	2	13.5	2	100	0	54	48	0	0	51	1.00
30510900--30511558	335	2.0	321	89	4	1003	31	18	11	38	1.87
30512094--30512144	20	2.5	20	75	9	50	54	19	19	5	1.64
30512580--30512606	13	2.1	13	100	0	54	44	25	7	22	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30516365--30516417	18	2.9	18	80	2	61	41	45	1	11	1.51
30516432--30516507	21	3.8	20	81	10	57	61	9	2	26	1.39
30516459--30516495	12	3.0	12	92	4	56	59	16	2	21	1.49
30516527--30516602	9	8.4	9	81	5	73	28	7	21	42	1.81
30516527--30516602	27	2.8	27	81	0	89	28	7	21	42	1.81
30519107--30519137	13	2.4	13	94	0	53	25	12	12	48	1.77
30520670--30520706	9	4.1	9	92	0	65	45	13	10	29	1.77
30523445--30523483	19	2.0	21	85	10	55	15	10	5	69	1.34
30523697--30523768	3	23.7	3	74	13	58	27	5	2	63	1.30
30527710--30527738	14	2.1	14	100	0	58	34	31	6	27	1.83
30530391--30530612	44	5.0	44	82	5	261	27	15	26	30	1.96
30530391--30530612	89	2.5	88	88	4	306	27	15	26	30	1.96
30531318--30531621	88	3.5	88	93	0	518	26	28	24	20	1.99
30531635--30531840	44	4.7	44	78	8	222	26	17	27	28	1.98
30532249--30532306	23	2.5	23	100	0	116	31	5	20	43	1.74
30532478--30532516	19	2.0	21	85	10	55	15	10	5	69	1.34
30536188--30536735	3	182.7	3	100	0	1096	33	0	33	33	1.58
30539797--30539873	27	2.9	27	90	3	120	16	24	38	19	1.92
30540083--30540120	19	2.0	19	89	0	58	50	7	5	36	1.54
30540914--30540948	10	3.2	11	92	8	54	65	0	0	34	0.93
30544338--30544385	23	2.1	23	96	0	87	16	6	16	60	1.55
30547118--30547144	11	2.5	11	100	0	54	40	14	7	37	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30549588--30549625	13	2.9	13	81	11	51	28	0	0	71	0.87
30549591--30549626	16	2.1	16	90	10	54	27	0	0	72	0.85
30549353--30549828	159	3.0	154	71	16	454	30	10	9	50	1.68
30550049--30550568	158	3.3	157	73	14	551	29	10	8	51	1.65
30550901--30551087	5	38.8	5	69	14	56	0	30	0	68	0.93
30550933--30551088	10	15.3	10	73	24	75	0	31	0	68	0.90
30550904--30551088	43	4.3	43	75	18	129	0	30	0	68	0.94
30550976--30551088	33	3.6	32	77	17	121	0	31	0	68	0.90
30552007--30552208	99	2.0	100	98	1	388	41	12	6	40	1.68
30553121--30553187	11	6.4	11	72	20	54	35	2	0	61	1.12
30553071--30553192	40	3.0	40	94	3	210	34	3	0	62	1.12
30555748--30555777	14	2.1	14	93	0	51	53	3	3	40	1.34
30559069--30559102	14	2.7	12	90	9	50	79	0	14	5	0.91
30559148--30559189	17	2.4	17	85	14	59	71	0	0	28	0.86
30559148--30559189	12	3.6	12	78	15	52	71	0	0	28	0.86
30561045--30561194	70	2.1	70	85	4	196	32	19	16	32	1.93
30563168--30563193	5	5.2	5	100	0	52	0	61	19	19	1.35
30567002--30567461	229	2.0	230	99	0	913	40	8	7	44	1.62
30574178--30574202	2	12.5	2	100	0	50	52	0	0	48	1.00
30577698--30577741	22	2.0	22	86	0	61	11	18	25	45	1.82
30577791--30577912	39	3.0	41	87	6	185	21	21	21	36	1.96
30577788--30577918	42	3.2	42	86	6	196	19	21	22	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30578234--30578278	21	2.1	21	91	0	72	2	46	17	33	1.61
30581593--30581638	7	6.6	7	79	0	56	28	47	2	21	1.62
30581712--30581802	7	13.3	7	81	9	89	34	45	0	20	1.52
30581712--30581833	21	5.8	21	72	18	60	36	41	0	21	1.59
30581825--30581858	15	2.3	15	90	5	52	35	29	0	35	1.58
30581964--30582000	18	2.1	18	90	5	58	56	2	0	40	1.13
30582109--30582658	114	4.8	114	87	2	768	28	25	22	23	1.99
30586133--30586201	33	2.2	30	82	7	84	66	1	1	30	1.09
30586140--30586211	33	2.2	33	82	7	83	65	1	1	31	1.10
30589142--30589244	2	52.0	2	98	1	199	0	50	0	49	1.00
30592345--30592379	15	2.4	15	90	4	54	48	0	8	42	1.33
30595907--30596538	314	2.0	313	97	0	1201	30	18	13	36	1.90
30603283--30603343	20	3.0	20	77	18	56	37	4	1	55	1.31
30603301--30603344	21	2.1	21	91	8	72	43	4	0	52	1.22
30606461--30606485	12	2.1	12	100	0	50	40	0	8	52	1.31
30606916--30606949	3	11.3	3	93	0	50	38	32	0	29	1.58
30606949--30606998	3	16.7	3	95	0	91	30	0	2	68	1.01
30610122--30610168	24	2.0	24	87	8	69	46	8	6	38	1.60
30614547--30614598	24	2.2	24	82	6	61	50	9	5	34	1.59
30617250--30617319	33	2.1	34	86	5	97	45	11	5	37	1.64
30621650--30621808	67	2.4	67	92	2	257	29	8	19	42	1.81
30623316--30623348	2	16.5	2	100	0	66	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30631871--30631961	34	2.7	33	88	8	130	39	0	15	45	1.46
30632022--30632416	126	3.1	125	83	3	483	37	16	15	30	1.90
30637993--30638049	25	2.3	24	77	11	62	52	3	0	43	1.18
30638003--30638184	89	2.0	90	95	1	330	54	4	3	37	1.39
30638548--30638590	18	2.4	18	88	0	59	44	9	25	20	1.81
30644356--30644409	18	2.9	18	83	2	63	40	44	1	12	1.54
30644430--30644483	6	8.7	6	86	8	63	68	9	0	22	1.17
30644430--30644491	18	3.3	19	84	6	72	66	9	1	22	1.30
30645232--30645477	56	4.4	56	83	3	271	31	10	15	42	1.81
30645230--30645477	57	4.4	57	84	3	297	31	10	15	42	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136