genome.fa.s10.2.7.7.80.10.50.1000.51.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  51  of  136  ( 16211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16854192--16854279	40	2.2	41	85	2	115	31	7	19	40	1.80
16854483--16854583	45	2.2	45	85	0	139	23	17	16	41	1.90
16854563--16854606	6	7.2	6	82	5	52	20	20	13	45	1.85
16864722--16864759	19	2.0	19	100	0	76	36	5	31	26	1.79
16872348--16872403	17	3.2	17	84	5	67	37	3	14	44	1.62
16872808--16873625	409	2.0	409	95	0	1483	34	12	21	31	1.91
16890248--16890356	49	2.2	51	83	9	143	31	18	7	43	1.77
16891560--16891784	43	5.3	43	85	2	274	25	25	20	28	1.99
16891560--16891784	85	2.6	86	83	3	283	25	25	20	28	1.99
16891920--16892010	43	2.1	43	84	6	114	45	9	10	34	1.73
16895097--16895135	16	2.4	16	82	0	51	35	10	2	51	1.50
16898560--16898596	17	2.1	18	90	5	58	29	24	0	45	1.53
16899313--16899346	9	3.7	9	92	4	50	82	5	0	11	0.83
16899313--16899372	17	3.5	16	76	24	52	83	3	6	6	0.90
16900154--16900183	11	2.7	11	100	0	60	93	6	0	0	0.35
16900186--16900227	8	5.2	8	91	8	68	76	0	11	11	1.03
16900178--16900235	22	2.6	24	86	10	79	74	0	12	13	1.08
16900193--16900227	15	2.3	15	100	0	70	77	0	11	11	1.00
16901500--16902193	50	14.0	49	74	7	373	33	21	19	25	1.97
16901496--16901980	100	4.9	99	79	5	423	33	20	19	26	1.97
16901597--16902082	150	3.2	149	80	3	458	33	21	19	25	1.97
16901750--16902181	150	2.9	150	78	2	422	33	22	20	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16902404--16902519	44	2.6	44	83	2	135	33	19	17	29	1.95
16904483--16904523	16	2.6	16	92	0	64	34	7	2	56	1.40
16908404--16908719	114	2.8	113	92	1	524	29	22	22	25	1.99
16908657--16908778	59	2.0	60	96	1	228	26	18	26	28	1.98
16908543--16908887	173	2.0	173	91	1	566	28	20	22	28	1.99
16908717--16909018	113	2.7	113	86	4	428	31	20	20	27	1.98
16908429--16909001	287	2.0	288	92	1	954	29	21	21	27	1.99
16909025--16909122	40	2.5	40	81	3	117	20	20	21	37	1.94
16929418--16929443	3	8.7	3	100	0	52	65	0	34	0	0.93
16940037--16940227	102	1.9	102	98	0	373	57	14	1	27	1.44
16940191--16940341	63	2.4	64	86	7	202	61	15	0	22	1.34
16945341--16945371	2	15.5	2	100	0	62	51	48	0	0	1.00
16945386--16945830	223	2.0	222	99	0	881	28	20	16	34	1.95
16952886--16952959	26	2.9	25	74	4	76	37	5	17	39	1.73
16954115--16955075	480	2.0	481	99	0	1915	33	12	16	36	1.87
16955409--16955470	31	2.0	31	100	0	124	38	29	3	29	1.73
16955409--16955483	31	2.4	30	89	8	98	41	26	2	29	1.69
16956888--16957200	131	2.4	131	81	0	374	38	12	16	31	1.87
16957141--16957738	95	6.4	95	83	2	689	36	14	18	30	1.91
16964569--16964608	20	2.0	20	85	0	53	50	2	2	45	1.28
16968417--16968492	15	4.9	15	78	13	66	42	3	22	31	1.72
16968456--16968493	16	2.4	17	82	13	53	39	2	15	42	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16980843--16981202	71	5.1	70	82	3	353	25	21	20	31	1.98
16980843--16981216	142	2.6	142	80	2	414	25	21	19	33	1.97
16980973--16981201	35	6.5	35	72	5	138	27	23	18	31	1.98
16981047--16981187	36	4.0	35	75	4	122	28	21	17	31	1.96
16985887--16985947	20	3.3	19	69	21	58	8	31	0	60	1.26
16986185--16986228	15	2.9	15	82	0	52	38	18	31	11	1.86
16988821--16988863	21	2.0	21	86	8	61	34	0	6	58	1.25
16988872--16988943	38	1.9	37	86	8	101	48	0	5	45	1.25
16989096--16989135	16	2.5	16	83	0	53	32	22	7	37	1.82
16996601--16996653	25	2.1	25	85	0	70	41	16	15	26	1.88
16998963--16999015	25	2.1	25	85	0	70	41	16	15	26	1.88
17000359--17000383	13	1.9	13	100	0	50	60	24	0	16	1.36
17003350--17003411	15	3.6	17	74	20	58	66	3	3	27	1.23
17003505--17003543	16	2.4	17	91	4	62	61	2	7	28	1.37
17007786--17007861	38	2.0	38	94	0	134	17	17	19	46	1.85
17009179--17009270	44	2.1	44	86	8	125	34	25	5	34	1.79
17009260--17009307	16	3.0	16	85	11	71	25	27	8	39	1.84
17011531--17011598	32	2.1	33	91	2	111	48	11	20	19	1.80
17011544--17011624	35	2.4	33	81	6	92	46	14	20	17	1.83
17023005--17023037	6	5.5	6	96	0	57	57	30	0	12	1.35
17023889--17023920	15	2.1	15	94	5	55	43	0	0	56	0.99
17024726--17024760	5	7.0	5	93	0	61	37	0	0	62	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17028701--17028730	16	1.9	16	93	6	53	10	36	13	40	1.78
17048046--17048089	20	2.2	20	88	4	63	75	2	0	22	0.92
17058675--17058713	20	2.0	20	90	10	62	15	23	5	56	1.59
17060725--17060763	20	2.0	20	90	10	62	15	23	5	56	1.59
17060965--17061201	50	4.6	50	74	6	165	24	26	22	27	2.00
17067969--17068001	10	3.7	9	84	15	50	3	18	0	78	0.87
17069797--17069831	17	2.1	17	94	0	61	28	14	11	45	1.79
17094148--17094245	37	2.6	37	80	1	106	38	18	14	28	1.90
17101894--17101960	32	2.1	32	100	0	134	32	11	5	49	1.64
17102397--17102463	30	2.3	27	73	22	64	37	1	1	59	1.16
17104053--17104129	34	2.2	37	76	17	85	53	7	1	37	1.38
17108472--17108515	19	2.3	19	76	0	52	47	2	2	47	1.27
17111257--17111281	2	12.5	2	100	0	50	48	0	0	52	1.00
17112725--17112751	13	2.1	13	100	0	54	29	37	0	33	1.58
17113204--17113327	63	2.0	63	93	0	212	29	12	15	41	1.84
17114359--17114446	44	2.0	44	84	4	117	43	5	14	36	1.70
17121753--17122709	475	2.0	476	99	0	1900	39	10	12	38	1.77
17123279--17123347	31	2.2	31	92	0	111	39	10	14	36	1.80
17133780--17133929	38	3.9	38	88	0	210	36	30	22	11	1.89
17135992--17136021	14	2.1	14	93	0	51	43	26	3	26	1.70
17141183--17141222	17	2.4	18	88	12	59	25	32	12	30	1.92
17141591--17141705	25	4.7	25	72	16	105	33	20	22	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17142856--17142901	7	6.3	7	82	7	56	63	0	0	36	0.95
17149503--17149542	13	3.2	13	89	3	55	12	5	17	65	1.44
17151325--17151427	54	1.9	54	89	0	161	26	24	22	27	2.00
17151320--17151452	54	2.5	54	79	0	158	25	24	23	27	2.00
17153556--17153754	45	4.4	45	80	7	183	24	21	14	39	1.91
17153556--17153754	90	2.2	90	79	7	217	24	21	14	39	1.91
17153633--17153805	45	3.8	45	80	7	147	24	19	14	41	1.89
17159121--17159247	45	2.8	45	85	0	164	22	23	14	40	1.90
17160074--17160109	8	4.5	8	100	0	72	36	11	0	52	1.37
17173221--17173358	56	2.6	50	84	8	152	27	19	27	25	1.99
17173221--17173397	50	3.4	49	76	13	160	28	19	27	24	1.99
17173627--17173698	36	2.0	36	100	0	144	36	8	27	27	1.86
17179882--17180079	50	3.8	52	76	5	170	27	19	28	24	1.99
17187749--17187780	15	2.1	15	94	0	55	15	6	9	68	1.36
17191623--17191934	44	6.8	44	73	9	223	27	23	19	30	1.98
17191624--17191847	93	2.5	89	84	7	272	26	22	20	30	1.98
17192004--17192300	85	3.4	85	71	14	249	32	19	17	30	1.95
17192134--17192441	45	6.8	45	73	10	207	32	21	14	30	1.94
17191904--17192441	181	3.0	181	82	2	605	31	20	16	30	1.95
17219413--17219485	29	2.5	29	95	0	128	20	27	9	42	1.83
17220567--17220623	26	2.2	26	90	0	87	24	15	24	35	1.95
17221756--17221799	22	2.0	22	86	4	63	27	0	4	68	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17221762--17221817	6	9.5	6	81	14	55	25	3	1	69	1.14
17221762--17221817	13	4.8	12	78	17	55	25	3	1	69	1.14
17221808--17221849	13	3.3	12	84	12	57	7	7	9	76	1.17
17221827--17221913	6	14.5	6	78	14	83	3	2	13	80	0.94
17223584--17223619	11	3.3	11	96	0	63	58	2	25	13	1.49
17225002--17225095	46	2.0	46	100	0	188	27	14	18	39	1.90
17227031--17227182	59	2.6	59	80	4	164	42	12	15	28	1.84
17227136--17227288	51	2.7	57	78	17	176	39	15	16	28	1.89
17227165--17227261	51	1.9	51	97	0	185	44	13	16	25	1.84
17228510--17228642	67	2.0	67	80	2	151	27	19	17	36	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136