genome.fa.s10.2.7.7.80.10.50.1000.126.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  126  of  136  ( 16211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43111430--43111532	38	2.8	38	91	5	160	66	0	33	0	0.99
43111409--43111494	34	3.0	28	76	22	88	67	0	32	0	0.91
43115437--43115497	27	2.2	27	94	2	104	9	29	27	32	1.89
43115540--43115613	28	2.7	28	79	10	89	47	2	6	43	1.44
43116170--43116226	29	2.0	29	82	0	69	42	8	10	38	1.71
43142595--43142633	20	2.0	20	84	0	51	15	30	23	30	1.95
43142660--43142686	3	9.0	3	100	0	54	66	0	0	33	0.92
43152977--43153052	37	2.1	37	97	0	143	46	0	6	47	1.28
43153705--43153768	3	21.3	3	100	0	128	67	0	0	32	0.91
43154396--43154420	13	1.9	13	100	0	50	48	4	0	48	1.20
43155195--43155229	17	2.1	17	89	5	54	28	20	17	34	1.95
43164602--43165042	213	2.1	214	98	1	850	36	11	11	40	1.78
43166563--43166601	21	1.9	21	84	5	53	17	15	0	66	1.25
43181056--43181330	137	2.0	137	100	0	550	44	16	16	22	1.86
43194650--43194713	30	2.1	31	91	2	103	23	1	15	59	1.45
43195808--43195843	17	2.1	17	89	0	54	63	5	2	27	1.30
43196277--43196302	12	2.2	12	100	0	52	42	0	0	57	0.98
43196774--43196799	12	2.2	12	100	0	52	42	0	0	57	0.98
43195889--43196882	497	2.0	497	99	0	1979	28	19	21	31	1.97
43208618--43208666	22	2.2	22	88	0	71	51	0	6	42	1.27
43208864--43208911	24	2.0	24	87	4	69	62	4	2	31	1.26
43242778--43242821	19	2.3	19	76	7	54	50	6	0	43	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43245706--43245747	14	2.6	16	78	21	52	42	0	0	57	0.99
43245718--43245745	14	2.0	14	100	0	56	35	0	0	64	0.94
43248490--43248523	17	1.9	18	88	5	52	58	0	0	41	0.98
43253732--43253791	27	2.2	29	79	14	81	43	0	8	48	1.33
43261011--43261062	27	2.0	26	92	7	88	46	7	0	46	1.31
43261240--43261390	18	8.4	17	72	17	78	66	0	32	0	0.96
43261242--43261313	10	6.6	10	73	17	54	68	0	31	0	0.90
43261242--43261343	24	4.3	23	71	11	73	66	0	33	0	0.92
43261241--43261322	28	2.7	30	75	19	89	67	0	32	0	0.91
43261260--43261383	38	3.4	38	86	7	170	67	0	31	0	0.96
43261262--43261362	10	10.5	10	72	16	79	65	0	33	0	1.00
43261245--43261324	34	2.8	28	75	24	85	67	0	32	0	0.91
43262718--43262753	14	2.6	14	90	0	54	22	22	33	22	1.97
43263372--43263408	17	2.2	17	100	0	74	29	16	8	45	1.76
43266039--43266314	41	6.7	41	93	1	455	29	25	20	24	1.99
43266367--43266984	113	5.5	111	89	6	919	29	16	14	39	1.88
43267668--43267747	31	2.6	31	76	9	85	42	7	10	40	1.67
43273029--43273066	16	2.5	16	87	8	53	42	0	0	57	0.98
43273348--43273377	2	15.5	2	93	6	53	50	0	0	50	1.00
43274036--43274079	19	2.4	18	80	3	52	45	2	9	43	1.48
43276646--43276810	82	2.0	83	98	1	323	47	3	12	36	1.58
43278531--43278621	31	3.0	31	80	13	102	46	6	9	37	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43278939--43278976	19	2.0	19	85	10	51	65	5	0	28	1.14
43283847--43283872	13	2.0	13	100	0	52	15	0	7	76	0.99
43291211--43291382	43	4.0	43	100	0	344	25	11	27	34	1.91
43292121--43292199	29	2.7	29	84	4	86	25	12	13	48	1.78
43303121--43303157	3	12.3	3	100	0	74	67	0	0	32	0.91
43303262--43303298	3	12.3	3	100	0	74	67	0	0	32	0.91
43303095--43303377	141	2.0	142	99	0	559	50	14	8	26	1.72
43307277--43307319	17	2.5	17	85	7	61	25	2	2	69	1.12
43316874--43316928	26	2.1	26	96	0	101	29	3	23	43	1.71
43317273--43317345	10	6.7	11	76	10	71	60	0	1	38	1.06
43317264--43317334	31	2.3	31	88	9	101	59	1	1	38	1.15
43317284--43317321	18	2.1	19	95	5	69	63	0	0	36	0.95
43317279--43317322	18	2.2	20	84	15	65	65	0	0	34	0.93
43317274--43317353	42	2.0	40	90	5	124	61	0	1	37	1.04
43317263--43317334	30	2.3	30	86	9	101	58	1	1	38	1.15
43323592--43323730	46	3.0	46	86	4	199	37	7	25	29	1.84
43326381--43326570	46	4.0	46	84	8	229	28	25	8	37	1.85
43327533--43327572	20	2.0	20	95	0	71	30	7	15	47	1.72
43327815--43327862	17	2.9	17	87	3	71	50	20	2	27	1.60
43348023--43348095	30	2.4	30	84	8	87	39	0	0	60	0.97
43348811--43348850	21	1.9	21	85	10	55	47	0	0	52	1.00
43349159--43349201	19	2.1	21	87	8	63	23	9	9	58	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43360703--43360766	19	3.5	18	77	14	60	23	3	3	70	1.16
43361123--43361151	15	1.9	15	100	0	58	82	6	0	10	0.83
43373121--43373157	16	2.3	16	90	0	56	27	2	16	54	1.56
43376489--43376545	30	1.9	30	85	0	78	28	12	8	50	1.69
43383325--43383361	18	2.0	19	89	5	58	45	0	8	45	1.32
43385286--43385326	18	2.3	18	80	12	50	24	0	2	73	0.96
43385664--43385720	26	2.2	25	81	15	62	73	3	7	15	1.18
43399140--43399217	12	6.7	13	64	27	50	41	0	0	58	0.98
43399128--43399258	35	3.8	34	80	13	128	40	0	0	58	1.09
43399142--43399210	22	3.2	22	78	13	72	43	0	0	56	0.99
43399217--43399255	17	2.6	14	84	15	51	38	2	2	56	1.27
43411541--43411584	24	1.9	22	86	9	61	43	2	4	50	1.35
43414981--43415009	12	2.3	13	94	5	51	41	3	6	48	1.47
43415035--43415061	14	1.9	14	100	0	54	48	7	0	44	1.31
43419568--43419610	23	1.9	22	85	4	59	55	4	0	39	1.20
43421066--43421154	45	2.0	45	91	6	146	34	12	8	43	1.74
43424867--43424903	15	2.5	15	91	4	58	32	8	2	56	1.43
43425091--43425133	21	2.0	22	86	13	63	65	2	2	30	1.18
43428479--43428509	16	1.9	16	93	0	53	35	3	22	38	1.71
43438527--43438591	26	2.4	28	80	12	73	52	3	3	41	1.32
43450029--43451849	908	2.0	908	100	0	3642	37	13	12	36	1.82
43462208--43462249	17	2.5	17	80	7	50	42	0	0	57	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43462375--43462443	29	2.3	30	82	9	79	33	8	10	47	1.68
43494801--43494862	18	3.6	16	73	26	56	62	4	8	24	1.42
43505480--43505531	27	2.0	26	88	3	77	65	1	1	30	1.14
43511007--43511281	147	1.9	147	86	1	390	20	32	8	38	1.83
43519635--43519692	30	1.9	30	86	6	82	50	1	3	44	1.29
43520787--43520853	28	2.4	29	92	5	111	40	7	1	50	1.39
43520853--43520878	8	3.2	8	100	0	52	88	0	0	11	0.52
43520909--43520990	27	3.0	27	89	0	119	29	29	28	13	1.94
43521305--43521333	14	2.1	14	100	0	58	37	6	0	55	1.27
43523944--43523987	3	14.7	3	100	0	88	65	0	0	34	0.93
43524272--43524378	27	4.0	27	88	0	151	14	28	27	29	1.96
43524404--43524439	9	3.9	9	88	3	54	0	2	13	83	0.76
43524439--43524508	27	2.5	29	86	6	101	50	1	7	41	1.39
43529257--43530910	549	3.0	548	89	0	2407	20	25	14	38	1.91
43536144--43536429	117	2.4	117	86	1	394	22	29	15	32	1.94
43536115--43536483	117	3.2	117	83	1	373	21	27	14	35	1.93
43539223--43539291	35	2.0	35	88	0	102	31	26	5	36	1.80
43549698--43549758	31	2.0	31	83	6	79	29	13	11	45	1.78
43553675--43554169	152	3.3	148	83	8	613	30	9	7	52	1.62
43554091--43554253	85	1.9	84	85	4	222	27	12	9	50	1.71
43556283--43556341	27	2.2	27	81	6	66	62	5	3	28	1.32
43556301--43556358	27	2.1	27	75	6	55	62	10	1	25	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43557969--43558022	17	3.0	17	80	19	65	64	0	0	35	0.94
43557969--43558022	19	3.0	18	80	15	67	64	0	0	35	0.94
43557970--43558021	9	5.8	9	77	8	61	65	0	0	34	0.93
43558822--43558854	13	2.5	13	100	0	66	21	36	6	36	1.78
43559296--43559320	12	2.1	12	100	0	50	44	16	8	32	1.76
43563140--43563252	60	1.9	58	85	3	154	39	5	14	40	1.68
43563517--43563587	30	2.4	29	79	11	74	54	2	0	42	1.14
43566177--43566211	16	2.2	16	90	5	54	65	2	0	31	1.07
43566255--43566302	23	2.0	25	84	8	64	62	2	0	35	1.07
43575019--43575053	12	2.9	12	86	0	52	74	11	2	11	1.18

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136