genome.fa.s10.2.7.7.80.10.50.1000.81.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  81  of  136  ( 16211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26562992--26563138	25	5.9	25	74	10	122	32	22	21	23	1.98
26562991--26563138	50	3.0	50	85	0	206	32	22	22	22	1.98
26572240--26572305	20	3.3	20	71	0	60	36	18	27	18	1.94
26572248--26572312	20	3.2	20	70	8	60	35	15	32	16	1.91
26572170--26572313	40	3.6	40	83	0	171	35	16	29	18	1.93
26581063--26581130	24	2.8	24	84	4	82	38	16	22	23	1.93
26585649--26585699	25	2.0	25	84	0	66	37	23	23	15	1.93
26585826--26586157	27	12.4	27	81	7	338	18	17	19	44	1.87
26585817--26586157	81	4.2	81	83	3	377	18	17	19	44	1.87
26598044--26598127	25	3.4	25	83	9	109	35	19	23	21	1.96
26598966--26599103	69	2.0	69	100	0	276	39	13	1	46	1.52
26604469--26604526	28	2.1	28	90	0	89	29	22	22	25	1.99
26604634--26604693	26	2.3	26	85	0	75	40	23	21	15	1.91
26604657--26604732	26	2.9	27	86	3	93	38	19	22	19	1.94
26604886--26605105	27	8.2	26	82	7	208	17	16	19	46	1.84
26604886--26605105	54	4.1	54	83	5	257	17	16	19	46	1.84
26604886--26605105	81	2.7	81	85	4	284	17	16	19	46	1.84
26621585--26621626	21	2.0	21	85	0	57	33	0	23	42	1.55
26636307--26636483	40	4.6	40	81	8	231	33	17	31	17	1.93
26636384--26636483	20	5.0	20	66	13	71	33	20	32	15	1.93
26636307--26636483	74	2.3	76	87	5	241	33	17	31	17	1.93
26669637--26670832	598	2.0	598	100	0	2392	34	12	15	37	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26670796--26670845	16	3.3	15	76	13	50	46	4	0	50	1.20
26672676--26672725	16	3.3	15	76	13	50	46	4	0	50	1.20
26680969--26681000	15	2.1	15	94	0	55	31	53	0	15	1.43
26682788--26682937	45	3.4	43	79	8	133	22	16	24	36	1.94
26689905--26690102	45	4.4	44	76	6	157	23	14	26	34	1.94
26696459--26696518	20	2.9	21	73	7	59	41	20	26	11	1.86
26700316--26700947	316	2.0	316	97	1	1187	34	16	19	28	1.94
26700854--26701006	50	3.0	50	90	4	236	46	15	20	17	1.84
26711504--26712096	297	2.0	297	97	0	1132	36	17	13	32	1.88
26714140--26714192	22	2.4	22	84	9	63	69	7	11	11	1.35
26720642--26720667	7	3.7	7	100	0	52	26	0	26	46	1.53
26721514--26721565	24	2.2	24	82	0	59	46	21	7	25	1.77
26721527--26721593	24	2.8	24	83	0	89	44	20	8	25	1.80
26721594--26721811	27	8.1	26	72	13	140	41	19	16	22	1.90
26721594--26721811	54	4.0	54	80	4	244	41	19	16	22	1.90
26721615--26721811	81	2.4	81	85	6	258	42	19	15	22	1.89
26730807--26730901	49	2.0	48	87	8	140	53	11	6	28	1.61
26733977--26734022	15	2.9	16	78	15	51	2	19	0	78	0.86
26737171--26737265	49	2.0	47	89	8	147	55	11	4	28	1.54
26742962--26743065	51	2.0	52	92	1	174	48	4	23	24	1.70
26743691--26743785	3	31.7	3	85	0	91	33	7	1	57	1.33
26753950--26754066	50	2.3	50	85	0	144	27	23	29	20	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26754340--26754378	20	2.0	20	89	0	60	58	0	25	15	1.37
26759442--26759488	22	2.1	22	100	0	94	29	0	17	53	1.44
26760227--26760279	11	4.7	11	86	9	72	75	7	1	15	1.11
26760227--26760280	12	4.8	12	84	9	69	75	7	1	14	1.09
26760316--26760353	13	2.8	14	88	8	60	68	2	13	15	1.32
26766882--26766994	46	2.4	47	92	2	201	45	22	14	18	1.85
26780449--26780671	50	4.4	50	71	15	151	25	15	28	30	1.96
26780489--26780674	50	3.7	50	80	5	196	24	16	27	31	1.96
26780489--26780674	101	1.8	101	87	2	275	24	16	27	31	1.96
26780492--26780709	101	2.2	101	82	3	260	27	15	26	31	1.96
26790125--26790152	5	5.6	5	100	0	56	82	0	0	17	0.68
26794418--26794451	13	2.6	13	100	0	68	29	0	8	61	1.26
26795413--26795479	21	3.3	21	65	23	61	37	8	5	47	1.59
26795594--26795699	50	2.1	50	82	3	124	27	23	28	20	1.99
26795658--26795777	49	2.4	49	77	9	129	30	19	27	23	1.98
26795989--26796027	20	2.0	20	90	10	62	56	5	23	15	1.59
26803496--26803534	5	7.8	5	88	0	60	76	2	0	20	0.90
26809836--26809872	19	1.9	19	94	0	65	62	13	0	24	1.31
26812148--26812453	27	11.4	27	85	2	364	44	23	15	17	1.86
26814335--26814457	35	3.5	35	85	0	147	30	13	16	39	1.87
26815507--26815571	22	3.0	22	81	4	78	43	15	23	18	1.88
26815503--26815576	22	3.3	21	77	5	67	43	17	21	17	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26815568--26815706	32	4.4	30	77	9	100	38	18	18	23	1.93
26815617--26815706	32	2.8	32	91	0	135	37	22	18	21	1.94
26815878--26815986	24	4.5	24	81	4	112	47	20	7	24	1.75
26816005--26816121	27	4.4	27	73	5	94	26	15	17	40	1.90
26834132--26834175	22	2.1	21	84	12	56	36	11	20	31	1.88
26842677--26842919	30	8.1	29	72	8	132	24	25	13	37	1.91
26842720--26842796	29	2.5	31	75	8	86	18	24	11	45	1.82
26842690--26842911	90	2.5	89	80	5	232	23	26	12	37	1.90
26842690--26842920	60	3.9	59	72	9	182	23	25	12	37	1.90
26847547--26847577	8	4.0	8	91	8	55	25	0	0	74	0.82
26849147--26849208	20	3.0	20	72	9	52	51	14	4	29	1.63
26849630--26849680	26	1.9	27	84	11	70	19	11	13	54	1.69
26852453--26852499	13	3.6	12	81	18	58	70	0	2	27	0.99
26852453--26852508	27	2.1	27	86	3	78	66	0	5	28	1.14
26859131--26859273	77	1.9	77	93	0	250	24	15	18	41	1.89
26859843--26859885	22	1.9	23	86	13	63	44	4	4	46	1.45
26860708--26860760	26	2.0	27	85	10	74	52	0	1	45	1.11
26861169--26861231	30	2.1	30	93	0	108	26	7	33	31	1.85
26864974--26865124	41	3.7	41	93	0	257	18	31	17	32	1.94
26864974--26865121	21	7.2	21	67	13	110	18	32	17	31	1.95
26864980--26865124	20	7.1	20	67	13	98	17	31	17	33	1.94
26868673--26868740	35	1.9	35	87	0	100	29	23	4	42	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26868710--26868743	16	2.1	16	94	0	59	26	20	8	44	1.81
26883048--26883086	19	2.1	19	95	0	69	28	10	12	48	1.74
26883027--26883128	54	1.9	53	90	6	161	32	12	12	42	1.81
26886104--26886157	28	1.9	28	88	0	81	24	20	24	31	1.98
26886526--26886899	81	4.6	80	85	4	443	18	16	20	43	1.88
26886526--26886902	27	14.0	27	84	8	380	18	16	20	43	1.88
26887470--26887530	24	2.5	24	81	2	68	26	42	1	29	1.65
26896694--26896757	3	21.3	3	93	0	110	35	0	0	64	0.94
26900024--26900257	51	4.6	51	77	12	216	31	24	17	26	1.97
26900014--26900258	101	2.4	100	85	6	343	31	24	17	26	1.97
26905613--26905757	51	2.9	51	89	1	220	31	27	15	25	1.96
26914493--26914767	137	2.0	138	82	3	340	30	27	20	21	1.98
26919642--26919721	41	2.0	41	84	0	106	42	21	15	21	1.88
26920776--26920868	48	1.9	48	95	0	168	9	23	16	50	1.74
26924880--26924905	12	2.2	12	100	0	52	46	30	15	7	1.74
26925016--26925202	50	3.8	50	79	9	204	21	26	23	27	1.99
26925346--26925399	28	1.9	28	92	0	90	33	25	24	16	1.96
26925637--26925851	32	6.7	32	79	5	204	36	20	20	21	1.95
26925644--26925852	64	3.3	64	80	7	255	37	21	20	20	1.95
26925637--26925851	96	2.2	96	81	4	254	36	20	20	21	1.95
26925895--26925959	27	2.5	26	76	14	71	32	20	24	23	1.98
26926034--26926080	24	1.9	25	95	4	87	48	27	8	14	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26926127--26926216	26	3.4	27	80	8	89	21	25	21	32	1.98
26934022--26934058	18	2.1	18	100	0	74	21	16	10	51	1.74
26946183--26946211	15	1.9	15	100	0	58	20	13	27	37	1.91
26954973--26955018	21	2.2	21	88	7	67	71	0	19	8	1.11
26955047--26955135	33	2.8	32	77	13	92	56	5	28	10	1.55
26971426--26972010	295	2.0	295	95	0	1062	27	16	18	36	1.93
26980544--26981022	52	9.2	52	99	0	940	25	17	22	34	1.96
26983033--26983124	47	2.0	47	91	0	148	34	19	10	34	1.87
26985491--26985515	12	2.1	12	100	0	50	32	0	24	44	1.54
26993030--26993135	12	8.8	12	68	12	56	7	21	1	68	1.24

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136