genome.fa.s10.2.7.7.80.10.50.1000.121.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  121  of  136  ( 16211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41171324--41171377	27	2.0	27	96	0	99	38	9	22	29	1.85
41181631--41181667	6	6.2	6	100	0	74	16	0	18	64	1.29
41206903--41207071	73	2.3	72	78	8	171	35	19	24	20	1.96
41207029--41207121	26	3.7	26	80	5	93	33	18	26	21	1.96
41207480--41207519	21	1.9	21	89	0	62	40	25	0	35	1.56
41209128--41209176	21	2.3	22	96	3	91	44	16	10	28	1.80
41215913--41215963	26	2.0	26	96	0	93	41	17	7	33	1.79
41216071--41216697	313	2.0	314	99	0	1247	44	7	9	38	1.66
41224370--41224599	114	2.0	114	98	0	442	43	6	5	44	1.55
41227778--41227853	28	2.7	27	75	15	73	31	17	0	51	1.45
41227806--41227861	21	2.7	20	83	8	76	30	12	1	55	1.47
41227809--41227882	35	2.1	36	80	16	84	29	13	1	55	1.47
41227793--41227871	21	3.8	20	75	9	50	31	18	1	48	1.57
41229458--41229496	20	2.0	20	84	0	51	46	7	10	35	1.67
41229507--41229580	20	3.8	19	71	5	58	35	16	4	44	1.66
41229684--41229770	20	4.3	20	80	0	102	42	19	5	32	1.75
41229664--41229778	40	2.9	40	84	0	122	41	17	6	33	1.76
41229684--41229813	60	2.2	60	81	5	147	40	17	5	36	1.73
41229891--41229935	20	2.2	20	88	0	63	40	17	4	37	1.70
41229970--41230016	20	2.4	20	85	3	69	46	21	0	31	1.51
41230032--41230070	20	2.0	19	85	5	51	38	20	0	41	1.53
41230118--41230192	20	3.8	20	73	5	62	40	17	5	37	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41230348--41230426	20	3.9	20	78	15	90	35	15	3	45	1.64
41230319--41230435	41	2.9	40	81	7	128	37	15	3	43	1.63
41230513--41230566	20	2.7	20	77	5	65	48	12	1	37	1.53
41230731--41230777	24	2.0	24	95	0	85	36	17	10	36	1.84
41235870--41235901	17	1.9	16	93	6	55	6	59	34	0	1.23
41236244--41236305	18	3.3	18	70	16	54	30	0	0	69	0.89
41236243--41236329	28	3.1	27	79	8	77	32	0	1	66	0.99
41240745--41240835	27	3.4	27	89	3	139	19	24	34	21	1.97
41241189--41241255	36	1.9	34	84	6	89	37	0	7	55	1.28
41246724--41247165	220	2.0	220	98	0	848	27	21	23	27	1.99
41247889--41247913	11	2.3	11	100	0	50	44	16	8	32	1.76
41250125--41250589	160	2.9	152	70	17	417	29	9	9	50	1.67
41250537--41250670	40	3.3	39	66	16	108	31	4	9	54	1.53
41250523--41250692	84	2.0	85	97	2	324	31	3	9	55	1.49
41251361--41251579	5	44.2	5	71	17	86	0	28	0	69	0.98
41251361--41251581	14	13.9	16	67	20	83	0	29	0	69	0.98
41251327--41251425	36	2.8	35	79	10	103	1	26	0	72	0.91
41251363--41251561	44	4.6	43	78	9	199	1	29	0	69	0.99
41251360--41251513	47	3.4	46	87	7	224	1	25	0	72	0.97
41251360--41251540	87	2.0	89	84	9	235	1	28	0	69	0.99
41251360--41251580	24	9.6	23	73	18	140	0	29	0	69	0.98
41251629--41251696	27	2.5	26	86	9	84	19	35	25	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41261549--41261612	9	6.9	9	75	12	58	54	4	1	39	1.31
41262237--41262404	47	3.6	45	71	19	141	46	2	3	47	1.35
41262201--41262345	44	3.2	43	69	19	116	46	2	3	48	1.31
41262285--41262345	28	2.2	28	85	5	81	45	0	3	50	1.17
41262185--41262370	91	2.0	91	91	0	300	46	2	3	46	1.34
41262486--41262515	16	1.9	15	93	6	51	40	0	10	50	1.36
41262386--41262799	120	3.5	120	92	2	683	42	2	6	49	1.40
41262459--41262764	59	5.1	60	65	15	186	42	1	7	48	1.42
41262507--41262541	18	2.0	17	88	5	52	45	0	0	54	0.99
41277130--41277177	24	2.0	25	83	4	62	68	6	6	18	1.32
41277568--41277612	19	2.4	19	92	0	72	31	0	4	64	1.13
41278255--41278304	26	1.9	26	95	0	91	42	14	2	42	1.56
41280861--41280911	21	2.4	21	90	0	75	15	25	29	29	1.96
41281311--41281357	8	5.8	8	85	5	58	27	0	0	72	0.85
41281311--41281359	17	2.9	17	87	3	64	28	0	0	71	0.86
41288467--41288493	2	13.5	2	100	0	54	51	0	0	48	1.00
41288572--41288598	2	13.5	2	100	0	54	51	0	0	48	1.00
41288413--41288624	105	2.0	106	98	1	408	39	14	13	33	1.84
41288892--41288930	6	6.7	6	88	2	53	17	17	25	38	1.92
41293363--41293443	24	3.4	24	73	13	85	16	28	20	34	1.94
41308305--41308340	16	2.2	17	90	5	56	38	0	0	61	0.96
41309279--41309305	6	4.5	6	100	0	54	70	0	29	0	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41312656--41312774	46	2.6	46	78	7	118	37	14	12	35	1.84
41314119--41314163	23	2.1	21	88	12	65	44	2	6	46	1.42
41314154--41314222	26	2.7	25	78	8	77	33	4	13	49	1.61
41314742--41314795	25	2.2	25	93	0	90	38	5	5	50	1.49
41317439--41317475	3	12.3	3	100	0	74	67	0	32	0	0.91
41331597--41331804	104	2.0	104	99	0	407	25	17	19	37	1.93
41334748--41334871	58	2.1	58	95	1	221	36	10	34	18	1.85
41339303--41339371	30	2.3	29	85	7	84	46	7	17	28	1.75
41341444--41341659	90	2.4	90	83	3	256	30	15	21	32	1.94
41341444--41341690	90	2.7	89	78	9	250	29	14	22	33	1.94
41342310--41342338	14	2.1	14	100	0	58	48	6	13	31	1.69
41343532--41343591	27	2.2	28	82	8	70	63	1	3	31	1.20
41343580--41343634	29	1.9	29	85	10	78	54	1	7	36	1.39
41343797--41343837	21	2.0	21	85	9	57	46	0	4	48	1.23
41357693--41357747	23	2.4	23	80	19	71	25	30	1	41	1.66
41357693--41357747	22	2.5	21	83	16	67	25	30	1	41	1.66
41359891--41359919	15	1.9	15	100	0	58	37	0	0	62	0.96
41360619--41360653	12	2.7	13	86	13	54	34	0	0	65	0.93
41369532--41369569	4	9.5	4	100	0	76	50	0	23	26	1.50
41375218--41377060	931	2.0	931	100	0	3686	35	18	14	31	1.91
41378296--41378353	29	2.0	29	100	0	116	27	31	10	31	1.90
41378297--41378361	29	2.2	29	94	0	112	30	27	9	32	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41395652--41395679	9	3.1	9	100	0	56	57	10	0	32	1.33
41395618--41395831	68	3.2	68	97	1	405	46	8	4	40	1.54
41395720--41395747	9	3.1	9	100	0	56	57	10	0	32	1.33
41395820--41395861	16	2.6	16	92	0	66	42	7	2	47	1.43
41395835--41395890	23	2.5	23	82	2	69	44	1	1	51	1.22
41405555--41405624	28	2.5	28	82	11	74	30	2	8	58	1.42
41406106--41406142	3	12.3	3	100	0	74	32	0	0	67	0.91
41417849--41417909	24	2.5	24	81	0	68	26	3	40	29	1.72
41430588--41430619	17	1.9	17	93	6	57	15	12	0	71	1.14
41432174--41432238	27	2.4	27	97	0	121	29	20	35	15	1.93
41432378--41432430	3	18.3	3	88	7	83	64	0	35	0	0.94
41432378--41432430	23	2.3	23	96	0	97	64	0	35	0	0.94
41432498--41432523	12	2.2	12	100	0	52	38	0	15	46	1.46
41432592--41432777	22	9.0	21	73	15	163	29	1	13	55	1.48
41432716--41432800	22	3.7	22	90	9	118	29	0	15	55	1.41
41434895--41434935	6	6.8	6	85	0	55	34	29	31	4	1.79
41438260--41438311	21	2.5	21	84	9	70	1	30	1	65	1.14
41440380--41440419	11	3.6	11	79	0	53	20	15	7	57	1.61
41440461--41440520	30	2.0	30	90	6	95	28	1	13	56	1.47
41443870--41443902	7	4.7	7	96	0	57	54	0	18	27	1.44
41458342--41458381	11	3.6	12	80	16	50	37	5	0	57	1.21
41458417--41458453	18	2.1	18	100	0	74	35	16	10	37	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41466382--41466409	14	2.0	14	100	0	56	42	14	21	21	1.88
41467455--41467759	152	2.0	153	99	0	603	37	10	13	39	1.79
41467821--41467873	22	2.5	22	81	3	63	54	1	5	37	1.35
41476461--41476610	71	2.1	73	83	2	187	33	14	16	36	1.89
41482107--41482150	22	2.0	21	82	4	52	29	4	2	63	1.26
41493734--41493789	27	2.1	27	90	6	87	66	3	14	16	1.39
41494951--41494975	12	2.1	12	100	0	50	8	32	8	52	1.60
41502434--41502628	95	2.0	96	99	1	383	53	8	3	35	1.46
41502824--41502868	22	2.0	22	82	0	54	33	11	4	51	1.58
41507415--41507454	16	2.5	16	91	0	62	47	2	7	42	1.45

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136