genome.fa.s10.2.7.7.80.10.50.1000.116.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  116  of  136  ( 16211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39373196--39373242	22	2.3	19	85	14	58	44	2	0	53	1.12
39373198--39373239	16	2.7	15	79	20	50	45	2	0	52	1.13
39380662--39380759	27	3.6	27	94	0	169	38	15	14	31	1.87
39388195--39388323	27	4.8	27	92	2	190	36	14	16	32	1.89
39399807--39400100	50	5.9	50	88	0	417	23	30	20	25	1.98
39401422--39401526	33	3.2	33	77	9	117	40	13	25	20	1.88
39404828--39404856	12	2.3	13	94	5	51	20	6	13	58	1.58
39406080--39406114	17	2.1	17	88	0	52	34	37	22	5	1.78
39407444--39407562	25	4.8	25	77	6	91	36	19	21	23	1.95
39408405--39408706	151	2.0	151	94	0	532	34	13	24	27	1.93
39410271--39410295	7	3.6	7	100	0	50	60	12	0	28	1.32
39411252--39411282	15	2.0	16	93	6	55	74	6	0	19	1.03
39411375--39411439	29	2.2	29	86	5	87	66	0	1	32	1.01
39411383--39411421	20	2.0	20	85	10	53	66	0	0	33	0.92
39411375--39411439	30	2.2	30	88	5	96	66	0	1	32	1.01
39411473--39411523	22	2.3	21	83	9	66	37	0	31	31	1.58
39411476--39411574	52	1.9	52	93	0	171	39	0	31	29	1.57
39411528--39411574	22	2.1	22	96	0	85	40	0	34	25	1.56
39414779--39414962	46	4.0	46	80	2	208	28	17	23	30	1.97
39418486--39418565	30	2.7	29	83	11	92	31	21	17	30	1.96
39426364--39426498	58	2.3	58	93	6	238	39	6	12	41	1.69
39429984--39430089	48	2.2	46	81	6	122	20	13	6	59	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39434763--39434844	41	2.0	41	100	0	164	34	14	26	24	1.94
39435804--39435836	15	2.2	15	94	0	57	63	12	0	24	1.28
39435844--39435882	13	3.2	12	86	13	53	74	7	2	15	1.15
39436176--39436209	12	2.8	12	90	0	50	61	8	0	29	1.26
39436817--39436880	4	15.8	4	78	15	60	75	0	3	21	0.95
39437431--39437678	132	1.9	132	90	5	403	29	25	18	26	1.98
39437670--39437895	88	2.6	89	89	1	346	19	25	26	28	1.99
39446233--39446261	12	2.3	13	94	5	51	79	0	0	20	0.74
39446884--39446949	4	16.8	4	76	14	57	72	0	4	22	1.02
39446882--39446950	29	2.3	30	83	13	90	73	0	4	21	1.00
39449101--39449154	19	2.8	19	94	0	90	37	11	16	35	1.84
39449115--39449177	19	3.0	22	84	9	69	39	9	17	33	1.82
39453967--39454033	32	2.1	32	100	0	134	23	11	23	40	1.88
39455047--39455076	15	1.9	16	93	6	53	10	23	0	66	1.21
39459642--39459693	24	2.2	24	85	0	68	38	3	7	50	1.50
39476041--39476107	11	6.0	11	72	20	59	47	1	0	50	1.10
39476045--39476114	23	3.1	22	88	10	97	48	1	0	50	1.09
39476042--39476113	5	12.5	6	70	24	57	48	1	0	50	1.09
39482994--39483207	48	4.5	47	85	3	288	24	13	18	44	1.85
39482993--39483207	95	2.3	94	91	2	342	24	13	18	44	1.85
39483004--39483211	25	8.8	25	71	19	117	24	13	17	44	1.84
39483154--39483228	23	3.3	22	73	12	62	22	18	18	40	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39483004--39483228	47	4.7	47	86	3	211	24	14	17	43	1.86
39490559--39490908	48	7.4	47	86	2	470	25	12	17	43	1.85
39490559--39490908	95	3.7	95	95	1	596	25	12	17	43	1.85
39494180--39494237	26	2.2	26	93	6	100	29	22	18	29	1.98
39501817--39502117	148	2.0	148	92	0	503	37	22	6	33	1.80
39526332--39526374	19	2.2	20	80	12	54	48	0	6	44	1.29
39527516--39527631	20	5.8	20	72	15	87	18	23	18	38	1.93
39527533--39527663	40	3.3	39	79	4	111	19	22	18	38	1.93
39528540--39528566	13	2.1	13	100	0	54	29	29	25	14	1.95
39540304--39540333	15	2.1	15	93	6	53	70	16	0	13	1.18
39541607--39541657	22	2.3	23	80	13	61	33	0	3	62	1.13
39546554--39546610	15	3.8	15	88	6	80	80	8	10	0	0.90
39546558--39546617	26	2.2	29	88	8	90	81	8	10	0	0.87
39547759--39547785	3	9.0	3	100	0	54	66	0	33	0	0.92
39549219--39549277	7	8.3	7	75	3	55	35	45	0	18	1.50
39549300--39549337	14	2.7	15	88	12	62	42	31	0	26	1.56
39549759--39549808	24	2.1	24	88	7	75	30	32	22	16	1.95
39549721--39549849	65	2.0	65	89	3	197	31	28	20	18	1.97
39549783--39550119	41	8.2	41	84	2	408	33	28	18	19	1.96
39565331--39565357	11	2.5	11	100	0	54	59	0	0	40	0.98
39566430--39566469	12	3.4	11	81	18	53	70	2	10	17	1.27
39566430--39566468	13	3.2	12	86	13	53	71	2	10	15	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39569888--39569932	22	2.1	21	83	4	54	55	11	8	24	1.63
39571261--39571290	15	1.9	16	93	6	53	40	33	3	23	1.71
39571261--39571291	16	1.9	16	93	0	53	41	32	3	22	1.70
39574177--39574640	129	3.6	129	88	4	618	27	21	21	29	1.98
39574138--39574632	44	11.6	43	68	12	182	27	21	20	30	1.98
39574177--39574640	253	1.8	256	84	4	641	27	21	21	29	1.98
39574646--39575341	88	7.9	88	86	1	926	28	24	18	28	1.98
39574848--39575169	44	7.3	44	63	8	134	27	24	19	27	1.99
39574646--39575341	264	2.6	263	88	3	1038	28	24	18	28	1.98
39578519--39578545	14	1.9	14	100	0	54	37	29	0	33	1.58
39578758--39578806	22	2.3	21	75	3	53	36	40	0	22	1.54
39578343--39579022	318	2.1	318	89	3	1025	43	25	2	28	1.69
39578996--39579035	11	3.2	12	86	13	55	75	0	0	25	0.81
39579003--39579036	11	3.1	11	95	0	59	79	0	0	20	0.73
39580804--39581078	43	6.4	43	86	2	374	18	17	32	31	1.95
39580818--39581067	87	2.9	86	85	4	342	20	18	31	30	1.96
39584575--39584606	16	2.0	16	93	0	55	25	15	0	59	1.36
39584834--39585024	51	3.8	50	73	14	185	31	27	16	24	1.96
39584827--39585011	102	1.8	100	85	3	228	31	25	16	25	1.96
39592192--39592218	9	3.0	9	100	0	54	33	11	0	55	1.35
39598518--39598574	20	2.8	20	84	7	62	17	5	5	71	1.23
39598494--39598594	49	2.1	48	80	10	109	18	4	4	71	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39608325--39608382	19	2.7	22	84	10	68	36	8	17	37	1.80
39609492--39609537	24	1.9	24	81	0	56	4	15	2	78	1.01
39610364--39610397	3	11.3	3	100	0	68	64	0	0	35	0.94
39610396--39610423	3	9.3	3	100	0	56	35	0	0	64	0.94
39614851--39614898	12	4.0	12	86	5	53	75	10	0	14	1.06
39614851--39614898	18	2.7	18	83	6	62	75	10	0	14	1.06
39614882--39614945	7	8.6	7	81	13	65	81	0	14	4	0.85
39614858--39614890	6	5.7	6	96	3	59	72	12	0	15	1.12
39617343--39617441	44	2.2	45	76	5	103	32	19	20	28	1.97
39617170--39617541	175	2.1	175	92	1	611	31	17	20	30	1.96
39617393--39617678	130	2.2	131	91	1	466	32	18	20	28	1.96
39617300--39617672	46	8.5	45	65	17	149	32	19	19	28	1.96
39617225--39617836	305	2.0	306	92	0	1012	32	18	20	28	1.96
39617532--39617858	175	1.9	174	88	0	492	33	17	21	28	1.96
39617854--39618328	50	9.5	49	67	10	273	34	23	19	22	1.97
39617853--39618331	100	4.8	100	91	1	728	34	23	19	22	1.97
39619021--39619081	26	2.4	25	78	5	59	1	13	8	77	1.07
39621872--39621973	27	3.8	27	78	0	105	25	12	25	36	1.91
39622199--39622249	26	2.0	26	96	0	93	21	11	27	39	1.88
39625309--39625425	58	2.0	58	91	0	189	33	13	22	30	1.93
39627147--39627204	22	2.5	23	78	13	57	41	24	3	31	1.71
39631504--39631535	16	1.9	17	93	6	57	43	6	0	50	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39644496--39644541	5	9.2	5	95	0	74	39	36	4	19	1.72
39652126--39652164	19	2.1	19	90	0	60	20	5	53	20	1.64
39657935--39657977	21	2.2	20	83	8	52	32	20	23	23	1.98
39660349--39660375	14	1.9	14	100	0	54	22	11	14	51	1.73
39660409--39660471	30	2.1	30	90	0	99	25	1	14	58	1.45
39660753--39660782	16	1.9	15	93	6	51	3	53	36	6	1.44
39661425--39661459	15	2.5	13	90	9	52	34	0	17	48	1.47
39663379--39663625	130	1.9	130	86	1	352	22	19	25	32	1.97
39667841--39667890	18	2.8	17	82	11	55	66	2	0	32	1.03
39673333--39673412	39	2.1	39	92	0	133	56	5	16	22	1.59

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136