genome.fa.s10.2.7.7.80.10.50.1000.37.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  37  of  136  ( 16211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12090755--12090857	40	2.5	41	76	10	104	72	4	2	19	1.15
12090780--12090856	24	3.4	22	79	13	86	76	3	2	16	1.05
12090780--12090857	16	4.6	16	77	15	77	75	3	2	17	1.07
12090754--12090856	12	8.7	11	68	21	66	73	4	2	18	1.13
12090804--12090862	17	3.5	17	88	6	68	72	1	5	20	1.12
12091311--12091353	22	2.0	22	86	4	61	13	9	6	69	1.35
12094529--12094618	33	2.7	33	89	0	135	47	15	18	17	1.82
12094529--12094637	33	3.3	32	82	7	121	46	16	18	18	1.84
12094529--12094679	66	2.3	66	81	6	164	47	15	19	17	1.83
12096611--12096655	21	2.1	21	100	0	90	26	15	13	44	1.83
12097155--12097185	3	10.3	3	92	0	53	29	3	0	67	1.06
12100920--12100944	13	1.9	13	100	0	50	20	32	32	16	1.94
12101862--12102289	29	14.5	29	82	4	306	22	26	13	37	1.91
12101955--12102289	115	2.9	116	85	5	442	22	26	12	39	1.89
12101862--12102231	86	4.2	87	78	9	313	23	26	13	37	1.91
12120863--12120984	66	1.9	64	85	6	167	41	3	4	50	1.40
12130221--12130531	129	2.4	133	89	3	459	25	27	16	30	1.97
12130221--12130586	43	8.4	43	82	3	408	25	26	17	31	1.97
12130944--12131065	16	7.9	16	68	17	62	30	4	16	49	1.64
12131012--12131152	9	16.2	9	69	14	55	29	2	17	51	1.57
12131223--12131266	23	1.9	23	90	9	72	29	0	22	47	1.51
12131269--12131309	20	2.0	20	90	4	64	56	0	0	43	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12131274--12131314	19	2.3	18	87	8	57	58	0	0	41	0.98
12131280--12131330	24	2.2	23	89	3	75	52	1	0	45	1.12
12132085--12132182	49	2.0	49	100	0	196	34	18	12	34	1.88
12132095--12132195	49	2.1	49	88	1	150	34	18	10	35	1.86
12132503--12132545	21	2.0	21	95	0	77	41	9	4	44	1.57
12133356--12133388	14	2.4	14	100	0	66	21	36	6	36	1.78
12133620--12133677	28	2.1	28	93	0	98	32	25	8	32	1.86
12133825--12133849	13	1.9	13	100	0	50	4	8	8	80	1.03
12133857--12133899	19	2.2	20	84	8	54	2	27	11	58	1.46
12141949--12141982	2	17.5	2	93	6	61	50	0	50	0	1.00
12142169--12142205	17	2.1	18	90	5	58	29	0	2	67	1.04
12151713--12151755	19	2.4	18	84	7	52	55	0	0	44	0.99
12151955--12152033	39	2.0	39	100	0	158	10	12	17	59	1.60
12161584--12161914	26	12.1	26	73	11	216	27	15	27	29	1.96
12161562--12161902	55	6.2	55	82	1	364	28	15	27	28	1.96
12161567--12161914	110	3.2	110	84	4	445	28	16	26	28	1.97
12163891--12164010	41	3.0	41	73	18	144	45	6	6	41	1.57
12163869--12163987	37	3.1	37	75	17	143	44	5	6	42	1.55
12164737--12165444	236	3.0	236	99	0	1389	30	17	23	28	1.97
12172894--12172943	24	2.1	23	85	7	64	50	0	2	48	1.12
12176070--12176108	20	2.0	20	90	5	62	30	10	15	43	1.80
12176287--12176337	26	2.2	24	78	21	56	60	5	0	33	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12178550--12178583	12	2.8	12	86	0	50	41	0	58	0	0.98
12178544--12178586	17	2.4	18	76	7	52	44	0	53	2	1.13
12178728--12178756	13	2.1	14	93	6	51	34	10	10	44	1.73
12191125--12191149	13	1.9	13	100	0	50	56	28	8	8	1.57
12201878--12201918	21	2.0	21	95	0	73	34	34	26	4	1.78
12209919--12209968	20	2.5	20	86	0	64	26	14	14	46	1.81
12217541--12217684	25	5.8	25	78	4	157	26	20	23	29	1.99
12217542--12217684	75	1.9	75	85	5	200	26	20	23	30	1.98
12220169--12220209	20	2.0	20	90	0	64	4	29	46	19	1.71
12243127--12243335	103	2.0	102	94	0	364	38	4	10	46	1.59
12243198--12243482	147	1.9	147	79	7	321	38	4	10	45	1.59
12244206--12244268	31	2.0	31	90	0	99	25	11	7	55	1.62
12244690--12244719	14	2.1	14	100	0	60	56	6	13	23	1.60
12245527--12245576	20	2.3	20	80	10	55	24	6	14	56	1.60
12246102--12246155	25	2.2	26	83	6	67	24	5	9	61	1.48
12248267--12248309	4	10.8	4	79	0	50	25	30	2	41	1.68
12253407--12253442	17	2.1	17	100	0	72	33	27	22	16	1.95
12269499--12269542	23	1.9	23	90	0	70	27	2	25	45	1.65
12269561--12269900	42	8.1	42	87	1	450	21	18	22	37	1.94
12272453--12272498	20	2.2	21	84	3	58	39	0	10	50	1.38
12272452--12272499	21	2.3	22	78	10	55	37	0	10	52	1.36
12272210--12272487	145	1.9	147	91	2	454	43	4	9	41	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12272364--12272556	94	2.1	91	86	7	266	41	4	10	43	1.58
12272213--12272551	145	2.3	145	83	7	357	42	4	9	43	1.58
12273825--12273850	3	8.7	3	100	0	52	69	0	0	30	0.89
12274838--12274895	27	2.1	27	87	0	80	43	20	18	17	1.89
12279810--12279867	23	2.5	23	97	0	107	5	10	32	51	1.58
12281575--12281769	98	2.0	98	92	2	329	18	10	12	57	1.63
12281701--12281733	15	2.2	15	89	10	50	9	6	12	72	1.26
12281839--12281887	24	2.0	24	100	0	98	20	8	8	63	1.48
12283840--12283870	15	2.0	16	93	6	55	67	0	32	0	0.91
12284699--12284799	37	2.6	38	76	6	96	27	17	22	31	1.97
12286412--12286450	20	2.0	20	84	0	51	48	5	0	46	1.24
12286444--12286490	24	2.0	23	83	4	58	55	2	2	40	1.24
12287989--12288015	3	9.0	3	100	0	54	66	0	0	33	0.92
12289249--12289366	31	3.9	31	72	17	88	47	11	12	27	1.77
12289183--12289364	91	2.0	92	82	9	223	45	9	17	27	1.79
12295490--12295599	26	4.2	26	89	0	166	37	20	18	24	1.94
12295486--12295599	52	2.2	52	93	0	192	36	20	18	24	1.94
12300770--12300820	18	2.8	18	85	8	59	21	17	13	47	1.82
12304871--12304948	40	1.9	41	92	2	131	28	28	16	26	1.97
12307352--12307390	20	2.0	20	85	5	53	25	2	0	71	0.98
12320074--12320126	22	2.4	23	78	12	58	50	3	7	37	1.49
12322368--12322400	11	3.1	11	91	4	50	75	0	3	21	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12324913--12324943	14	2.2	14	94	0	53	48	16	19	16	1.81
12329426--12329474	21	2.3	21	79	10	64	26	22	30	20	1.98
12331669--12331707	18	2.1	18	85	4	51	64	0	17	17	1.30
12339224--12339259	14	2.6	15	87	12	51	38	5	19	36	1.75
12341171--12341230	31	1.9	31	93	0	102	40	10	30	20	1.85
12345673--12345924	27	9.4	27	75	7	185	43	18	19	19	1.89
12345673--12345934	54	4.9	54	73	11	216	42	19	19	19	1.90
12345673--12345933	81	3.2	81	79	6	255	42	19	19	19	1.89
12346275--12346330	28	2.0	28	86	6	78	17	21	28	32	1.96
12350358--12350405	21	2.5	19	77	12	53	16	8	31	43	1.78
12350366--12350410	21	2.1	21	91	0	72	17	8	33	40	1.81
12353141--12353308	27	6.3	27	78	8	164	45	19	19	15	1.85
12353142--12353292	80	1.9	80	84	2	205	45	21	18	14	1.85
12353662--12353719	28	2.1	28	86	0	80	20	20	24	34	1.97
12370599--12370739	35	4.0	35	84	2	140	40	31	9	17	1.83
12370600--12370759	70	2.3	70	80	1	176	40	31	10	17	1.83
12390017--12390239	44	5.1	44	66	0	176	26	13	22	37	1.92
12390018--12390239	88	2.5	88	100	0	444	26	13	22	37	1.91
12390267--12390632	44	7.8	44	68	12	201	26	25	22	26	2.00
12390267--12390695	143	3.0	143	95	0	750	26	24	21	27	1.99
12392367--12392459	29	3.2	26	78	18	80	3	2	11	82	0.87
12392374--12392459	10	8.3	10	79	14	86	2	2	11	83	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12392367--12392459	19	4.8	19	81	10	84	3	2	11	82	0.87
12400541--12400574	12	2.6	13	90	9	52	11	0	38	50	1.39
12401414--12401621	44	4.5	44	70	12	155	26	25	23	25	2.00
12401300--12401684	143	2.7	143	88	0	538	27	23	20	29	1.99
12403342--12403434	29	3.2	26	78	18	80	3	2	11	82	0.87
12403349--12403434	10	8.3	10	79	14	86	2	2	11	83	0.83
12403342--12403434	19	4.8	19	81	10	84	3	2	11	82	0.87
12412121--12412152	12	2.4	14	90	10	50	12	0	37	50	1.41
12415405--12415433	14	2.1	14	93	6	51	62	3	20	13	1.46
12415635--12415684	26	1.9	26	91	0	82	38	6	20	36	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136