genome.fa.s10.2.7.7.80.10.50.1000.133.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  133  of  136  ( 16211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45973471--45973517	23	2.1	23	84	11	62	25	4	0	70	1.05
45978034--45978221	101	1.9	98	82	5	234	40	14	6	37	1.73
45981868--45981904	2	18.5	2	100	0	74	51	0	0	48	1.00
45987336--45987466	57	2.3	56	82	2	154	29	12	13	44	1.81
45993038--45993074	17	2.1	17	90	5	56	48	0	2	48	1.15
46002847--46002919	36	2.0	37	97	2	139	58	10	5	24	1.53
46008717--46008749	16	2.0	17	88	5	50	48	0	3	48	1.17
46008934--46008975	21	2.0	21	100	0	84	28	23	19	28	1.98
46010697--46010740	20	2.2	20	84	8	54	70	6	0	22	1.11
46010688--46010735	19	2.6	18	74	9	51	72	4	0	22	1.01
46013934--46013979	21	2.2	21	88	0	65	41	15	21	21	1.90
46018717--46019279	105	5.4	104	84	1	606	28	23	15	32	1.95
46024211--46024548	169	2.0	168	98	0	658	51	15	12	20	1.75
46033497--46033522	12	2.2	12	100	0	52	50	0	15	34	1.45
46033537--46033611	29	2.5	31	83	12	86	50	2	2	44	1.30
46033537--46033611	31	2.5	31	83	12	86	50	2	2	44	1.30
46036961--46037005	23	1.9	24	82	13	58	35	4	11	48	1.59
46048698--46048730	17	1.9	17	93	0	57	33	6	12	48	1.65
46049766--46050030	132	2.0	133	99	0	523	32	12	11	43	1.78
46051747--46051797	3	17.0	3	95	0	93	64	0	1	33	1.05
46052547--46052612	11	6.4	11	78	18	63	37	3	0	59	1.13
46052555--46052627	21	3.6	21	75	14	82	38	2	0	58	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46052545--46052624	39	2.1	39	95	4	144	40	2	0	57	1.12
46052595--46052634	21	1.9	21	84	0	53	37	5	0	57	1.21
46054947--46055166	105	2.1	105	80	1	244	30	20	13	34	1.92
46056969--46057157	94	2.0	95	98	1	371	50	4	2	43	1.33
46059087--46059114	14	2.0	14	100	0	56	21	7	21	50	1.72
46062313--46062379	30	2.2	31	84	5	84	58	0	5	35	1.23
46062301--46062526	106	2.1	107	96	2	427	49	2	11	36	1.53
46062414--46062485	30	2.4	31	83	4	85	59	0	5	34	1.21
46063289--46063337	18	2.7	18	80	0	62	30	10	16	42	1.81
46063619--46063665	17	2.8	17	83	0	58	44	17	6	31	1.73
46069402--46069455	27	2.0	27	100	0	108	48	7	3	40	1.49
46069410--46069468	27	2.2	27	84	6	75	49	10	3	37	1.54
46070464--46070514	24	2.1	24	85	0	66	52	0	0	47	1.00
46079963--46080125	80	2.0	81	87	5	233	39	14	7	37	1.76
46081583--46081647	31	2.1	31	85	0	85	36	15	9	38	1.79
46107674--46107710	18	2.1	18	89	0	56	21	32	0	45	1.52
46117579--46117609	14	2.1	15	94	5	55	54	0	0	45	0.99
46118280--46118327	13	3.3	15	80	14	55	27	0	0	72	0.84
46118278--46118340	29	2.2	29	85	5	83	31	1	0	66	1.01
46121031--46121430	195	2.0	198	86	5	560	49	16	9	24	1.75
46122025--46122056	11	3.1	11	86	13	50	53	0	0	46	1.00
46122022--46122077	17	3.2	17	75	22	53	46	0	1	51	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46126297--46126332	2	18.0	2	100	0	72	0	50	0	50	1.00
46127837--46127951	36	3.1	38	71	16	107	34	6	2	56	1.38
46128561--46128625	22	3.1	22	63	24	59	46	3	18	32	1.65
46128543--46128625	40	2.1	40	100	0	166	45	4	16	32	1.69
46129366--46129428	31	2.0	31	87	0	90	38	17	15	28	1.91
46132791--46133004	110	1.9	110	94	0	374	27	26	17	29	1.97
46142844--46142874	9	3.4	9	95	0	53	38	25	9	25	1.86
46142873--46142947	37	2.0	37	89	0	114	44	13	5	37	1.66
46143077--46143154	38	2.0	39	95	2	140	17	2	28	51	1.59
46143135--46143159	13	1.9	13	100	0	50	12	0	48	40	1.40
46148083--46148129	23	2.0	23	83	4	58	61	0	6	31	1.21
46148893--46148945	24	2.3	23	78	12	56	50	3	1	43	1.30
46160812--46160874	30	2.1	31	96	3	119	66	6	6	20	1.36
46161075--46161347	42	6.4	42	71	13	189	24	26	27	21	1.99
46161107--46161174	19	3.4	19	67	21	57	22	27	29	20	1.98
46161045--46161395	173	2.0	174	98	1	688	24	25	27	23	2.00
46161280--46161347	19	3.4	19	67	21	57	22	27	29	20	1.98
46173769--46174895	272	4.0	281	83	10	1353	45	18	12	23	1.83
46178120--46178179	31	1.9	32	86	3	86	56	0	5	38	1.21
46179911--46179967	27	2.1	27	87	3	80	29	1	3	64	1.20
46180722--46180766	24	1.9	23	90	4	72	31	0	15	53	1.43
46180722--46180777	23	2.5	24	85	8	73	30	0	21	48	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46181547--46181573	11	2.5	11	100	0	54	74	7	0	18	1.05
46186302--46186335	16	2.1	16	88	0	50	38	0	17	44	1.49
46188928--46188988	29	2.1	30	81	3	70	32	9	19	37	1.85
46194474--46194532	19	3.0	19	82	9	57	59	3	0	37	1.14
46194495--46194539	17	2.6	17	83	16	58	60	0	0	40	0.97
46200364--46200405	17	2.4	18	84	11	52	52	0	0	47	1.00
46204825--46204876	26	2.0	26	96	0	95	50	17	15	17	1.79
46216544--46216986	142	3.2	135	81	6	421	27	14	21	37	1.92
46216520--46216986	135	3.4	133	79	9	476	26	14	22	37	1.92
46217386--46217575	95	2.0	95	98	0	371	30	15	18	35	1.92
46219910--46219962	21	2.5	21	96	0	97	22	24	30	22	1.99
46232940--46232977	19	2.0	19	100	0	76	36	15	15	31	1.90
46235757--46235856	52	1.9	52	100	0	200	35	13	23	29	1.92
46237528--46237738	102	2.1	103	98	0	406	41	9	3	45	1.53
46237544--46237762	102	2.1	102	92	3	343	42	8	3	45	1.51
46242878--46242921	18	2.4	18	85	7	54	34	4	0	61	1.16
46269171--46269243	33	2.2	34	95	2	130	32	5	13	47	1.66
46281622--46281779	54	2.9	54	87	0	235	37	24	13	24	1.92
46284927--46284977	24	2.1	25	86	13	72	39	0	7	52	1.30
46287679--46287760	42	2.0	42	90	0	128	32	17	14	35	1.90
46297813--46298172	179	2.0	180	99	0	713	37	10	5	47	1.59
46304145--46304347	107	1.9	107	83	0	262	42	10	11	34	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46305108--46305187	24	3.3	24	78	0	79	18	55	7	18	1.66
46305209--46305321	18	6.3	18	75	0	73	28	49	12	9	1.72
46305234--46305350	12	9.8	12	77	0	90	28	51	11	8	1.68
46305228--46305357	24	5.4	24	75	0	116	28	53	10	7	1.63
46305204--46305350	42	3.5	42	78	0	132	27	51	11	10	1.70
46305246--46305356	30	3.7	30	77	0	123	27	52	11	8	1.66
46305278--46305321	6	7.3	6	94	0	61	31	45	15	6	1.73
46308364--46308409	5	9.2	5	95	0	65	60	6	0	32	1.22
46308764--46308857	29	3.2	29	68	21	79	43	20	10	25	1.84
46308763--46308917	58	2.6	59	89	1	240	44	20	9	25	1.81
46309163--46309200	17	2.2	17	86	9	51	10	7	5	76	1.15
46309163--46309204	18	2.4	18	81	18	54	11	9	4	73	1.22
46310037--46310152	3	35.7	3	73	20	83	31	60	4	4	1.35
46310044--46310137	18	5.6	18	83	12	112	32	59	3	4	1.33
46310037--46310119	24	3.5	24	91	0	139	33	60	3	2	1.27
46310123--46310240	42	2.8	42	78	5	121	22	60	5	11	1.51
46310206--46310264	18	3.3	18	92	0	91	25	55	10	8	1.61
46310242--46310484	24	9.7	24	70	17	147	21	58	8	11	1.58
46310242--46310421	48	3.6	48	90	4	198	22	57	8	11	1.62
46312491--46312594	9	11.2	9	66	13	50	24	60	3	11	1.47
46312543--46312637	42	2.3	42	81	0	109	24	57	6	11	1.56
46312644--46312732	30	3.2	30	64	23	84	19	59	11	10	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46312621--46312841	54	4.3	53	81	11	257	22	58	9	9	1.58
46312656--46312842	24	7.5	24	67	17	96	21	59	9	9	1.57
46312665--46312856	48	3.9	47	74	10	152	24	58	8	8	1.56
46324197--46324226	6	5.0	6	95	0	51	36	0	0	63	0.95
46326077--46326114	20	1.9	20	89	10	60	47	0	0	52	1.00
46326237--46326272	15	2.3	16	95	4	65	77	2	0	19	0.88
46326975--46327003	1	29.0	1	100	0	58	0	0	0	100	0.00
46335000--46335032	18	1.9	18	88	11	52	33	0	12	54	1.37
46351279--46351433	77	2.0	78	98	1	303	41	3	7	47	1.51
46353660--46353741	43	1.9	43	97	0	155	36	4	36	21	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136