Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  136  of  136  ( 16211 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47383816--47383863
23
2.1
23
100
0
96
25
4
0
70
1.04
47390635--47390945
170
1.8
170
82
5
405
26
21
13
38
1.90
47391661--47391723
28
2.2
27
81
15
74
52
0
4
42
1.22
47393532--47393586
28
1.9
29
82
10
69
20
7
43
29
1.78
47393616--47393640
13
1.9
13
100
0
50
0
12
56
32
1.36
47393794--47393860
33
2.0
34
97
2
127
11
29
14
43
1.82
47397107--47397148
21
2.0
21
100
0
84
28
28
14
28
1.95
47399496--47399545
24
2.1
24
100
0
100
42
12
14
32
1.82
47426211--47426239
15
1.9
15
100
0
58
27
10
20
41
1.85
47426752--47427027
23
12.0
23
75
8
168
29
4
25
40
1.76
47426729--47427027
46
6.5
46
76
6
241
30
4
25
39
1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136

The End!