genome.fa.s10.2.7.7.80.10.50.1000.110.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  110  of  136  ( 16211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37202639--37202672	11	3.1	11	91	8	52	91	5	0	2	0.51
37203635--37203751	18	6.3	18	73	14	85	61	2	3	32	1.26
37203635--37203689	19	2.9	19	79	12	69	58	1	0	40	1.09
37203682--37203725	19	2.4	18	88	3	61	70	2	4	22	1.17
37213466--37213490	1	25.0	1	100	0	50	100	0	0	0	0.00
37213491--37213516	1	26.0	1	100	0	52	0	0	0	100	0.00
37214408--37214472	28	2.3	28	79	15	71	40	0	1	58	1.07
37220311--37220372	31	2.1	30	82	17	76	29	17	8	45	1.77
37220521--37220585	25	2.6	25	78	9	78	30	23	20	26	1.98
37220575--37220643	24	2.8	25	72	12	70	31	21	23	23	1.98
37228934--37228967	18	2.0	16	88	11	50	70	2	14	11	1.27
37247001--37247029	15	1.9	15	100	0	58	37	0	34	27	1.57
37251686--37251724	19	2.1	19	85	0	51	12	30	0	56	1.37
37254923--37255055	42	3.1	43	74	11	128	28	21	16	33	1.95
37262875--37262940	25	2.6	25	90	0	96	27	19	37	15	1.92
37262994--37263042	20	2.3	21	79	6	55	36	0	40	22	1.54
37265672--37265711	18	2.3	18	91	4	64	77	5	2	15	1.04
37265665--37265713	24	2.0	24	84	7	64	77	4	2	16	1.01
37265976--37266152	81	2.2	81	78	4	196	33	20	21	24	1.97
37265996--37266135	40	3.5	40	83	2	165	28	20	22	28	1.98
37266170--37266657	156	3.1	155	83	4	536	31	16	22	29	1.96
37266708--37266777	29	2.4	29	77	11	74	25	0	18	55	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37266782--37266826	14	3.2	14	87	6	65	20	0	28	51	1.48
37266794--37266832	7	5.6	7	85	11	53	15	0	30	53	1.42
37267023--37267207	7	26.4	7	71	6	106	18	1	34	45	1.60
37267145--37267207	29	2.3	27	78	13	74	19	1	33	46	1.59
37275821--37275889	30	2.2	31	82	10	79	24	7	5	62	1.44
37285303--37285514	53	4.0	53	84	4	239	36	12	22	27	1.91
37288279--37288308	15	2.0	15	100	0	60	80	0	20	0	0.72
37293658--37293941	141	2.0	142	98	1	552	27	17	16	38	1.92
37298672--37298738	18	3.7	18	71	0	62	41	20	7	29	1.80
37298666--37298755	36	2.5	36	77	0	99	40	20	8	31	1.83
37303423--37303470	25	1.9	25	100	0	96	43	4	25	27	1.72
37305203--37305396	85	2.3	85	91	0	307	30	16	22	29	1.96
37308354--37308386	9	3.8	9	92	8	50	12	15	0	72	1.12
37315823--37317036	607	2.0	608	95	0	2196	26	16	22	33	1.96
37318007--37318083	32	2.4	33	82	10	88	22	24	35	18	1.96
37322700--37322758	27	2.2	27	87	0	82	16	16	5	61	1.52
37323777--37323932	85	1.8	85	91	0	258	33	16	19	30	1.94
37326079--37326194	43	2.7	42	76	11	110	25	17	28	29	1.97
37326855--37326900	23	2.0	23	83	8	58	39	6	17	36	1.76
37340225--37340302	20	3.9	20	75	0	75	43	10	12	33	1.77
37340225--37340302	40	2.0	40	81	0	93	43	10	12	33	1.77
37340235--37340315	20	4.1	20	77	0	54	44	11	11	33	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37340321--37340505	27	7.0	27	83	6	234	43	22	15	18	1.88
37340314--37340505	54	3.6	54	86	2	273	42	22	16	18	1.89
37344964--37345061	31	3.2	31	77	2	99	19	18	17	44	1.87
37363167--37363200	17	2.1	17	88	5	52	50	0	11	38	1.39
37364313--37364379	20	3.4	20	79	10	75	55	5	0	38	1.25
37372936--37372973	3	13.0	3	94	5	69	34	0	0	65	0.93
37374828--37374920	44	2.1	45	97	2	179	45	4	6	44	1.49
37389020--37389214	98	2.0	98	94	0	345	35	25	11	27	1.90
37390734--37390844	19	5.8	19	88	0	168	37	16	9	36	1.82
37391523--37391562	22	1.9	20	85	10	53	35	7	2	55	1.42
37391676--37391853	45	4.0	45	100	0	356	33	8	26	30	1.87
37392831--37392865	18	1.9	18	88	11	54	65	5	5	22	1.36
37400136--37400179	12	3.8	12	88	11	74	45	0	0	54	0.99
37400145--37400180	10	3.4	10	85	14	54	44	0	0	55	0.99
37400136--37400180	22	2.0	22	100	0	90	46	0	0	53	1.00
37401550--37401615	24	2.7	24	80	2	78	16	27	21	34	1.95
37413738--37413769	8	4.0	8	100	0	64	25	37	0	37	1.56
37414763--37414816	11	4.8	12	80	19	71	27	31	0	40	1.57
37418130--37418355	124	1.8	124	92	0	380	33	21	16	28	1.95
37419007--37419070	33	2.0	30	82	14	76	43	12	15	28	1.83
37419375--37419400	5	5.2	5	100	0	52	23	0	0	76	0.78
37420110--37420161	25	2.1	25	100	0	104	32	23	15	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37423597--37423637	6	6.8	6	91	0	64	53	2	43	0	1.13
37423597--37423637	18	2.3	18	95	0	73	53	2	43	0	1.13
37430323--37430382	17	3.5	17	77	8	59	0	30	1	68	0.99
37430322--37430387	11	5.8	11	76	5	60	0	27	3	69	1.03
37434223--37434260	20	1.9	20	88	0	58	71	0	7	21	1.11
37436106--37436151	21	2.2	21	92	0	74	0	13	21	65	1.26
37436101--37436151	15	3.5	15	86	2	59	0	13	19	66	1.24
37436106--37436158	21	2.5	20	85	11	70	0	13	22	64	1.28
37436381--37436503	61	2.0	62	98	1	239	43	22	13	21	1.87
37436654--37436718	32	2.1	32	97	2	123	47	12	9	30	1.72
37444744--37444776	5	6.6	5	89	10	50	0	15	0	84	0.61
37444839--37444879	21	2.0	21	85	9	57	29	0	9	60	1.28
37445132--37445224	44	2.1	45	92	6	154	37	25	4	32	1.76
37445206--37445260	16	3.4	16	87	0	83	30	25	5	38	1.79
37446317--37446386	35	2.0	35	86	10	99	31	8	20	40	1.82
37447447--37447492	20	2.2	21	84	3	58	52	4	19	23	1.64
37448361--37448528	84	2.0	84	98	0	327	35	17	17	29	1.93
37452026--37452242	40	5.4	40	81	6	235	36	17	28	17	1.93
37452007--37452186	79	2.3	80	83	2	220	35	16	30	17	1.92
37452114--37452175	20	3.1	20	70	9	63	33	17	30	17	1.94
37453048--37453075	11	2.5	11	100	0	56	57	7	0	35	1.26
37463890--37464029	39	3.5	39	84	1	181	44	21	3	30	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37463893--37463933	15	2.6	17	85	11	52	46	21	0	31	1.52
37464062--37464094	15	2.3	15	89	5	50	51	24	3	21	1.62
37466488--37466539	19	2.7	19	81	0	68	28	21	28	21	1.98
37475999--37476062	31	2.1	31	96	0	119	29	14	29	26	1.95
37479987--37480102	55	2.1	56	98	1	225	42	1	27	28	1.65
37480379--37480438	30	2.0	30	83	6	77	48	0	20	31	1.50
37489341--37489373	16	2.1	16	100	0	66	24	12	6	57	1.57
37497438--37497486	25	2.0	25	87	0	71	42	18	8	30	1.79
37497452--37497534	37	2.3	35	83	6	94	42	13	4	39	1.65
37498831--37499047	113	1.9	113	95	0	389	33	19	11	35	1.87
37500178--37500582	115	3.6	112	88	6	611	41	16	16	24	1.89
37500693--37501451	115	6.8	113	88	6	925	25	16	15	42	1.87
37505955--37505998	18	2.6	17	86	10	63	45	2	11	40	1.53
37506226--37506291	33	2.0	33	100	0	132	51	3	18	27	1.60
37507476--37507702	125	1.8	126	86	0	330	32	16	21	29	1.95
37510719--37510932	112	1.9	112	95	0	383	40	8	7	43	1.62
37510938--37511032	21	4.6	21	80	7	115	25	1	29	44	1.61
37510938--37511025	43	2.2	40	87	8	124	25	1	29	44	1.61
37511116--37511283	21	7.7	21	86	7	212	23	0	27	47	1.56
37511118--37511284	66	2.6	65	90	5	257	23	0	26	48	1.55
37511261--37511299	16	2.4	17	86	4	53	20	0	25	53	1.45
37511476--37511518	18	2.4	18	88	0	59	44	9	27	18	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37513279--37513333	28	2.0	28	81	0	65	56	0	5	38	1.23
37513322--37513419	51	1.9	51	89	4	153	46	2	25	25	1.63
37513383--37513445	22	2.8	22	80	20	69	46	1	30	22	1.61
37519949--37519996	23	2.2	20	78	10	51	47	8	8	35	1.64
37520009--37520435	231	1.9	223	83	3	548	34	12	8	44	1.73
37521583--37521630	24	2.0	24	88	8	71	60	10	2	27	1.41
37524189--37524545	180	2.0	180	98	0	696	44	12	15	27	1.82
37536312--37536341	12	2.5	12	94	0	51	16	23	30	30	1.96
37555638--37555664	13	2.1	13	100	0	54	29	0	22	48	1.51
37558702--37558786	32	2.7	32	81	5	93	36	21	23	18	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136