genome.fa.s10.2.7.7.80.10.50.1000.82.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  82  of  136  ( 16211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26993030--26993085	6	9.8	6	82	7	55	7	17	0	75	1.03
26993030--26993075	15	2.8	16	83	12	58	6	17	0	76	1.00
26993038--26993165	57	2.2	57	90	2	195	8	23	3	64	1.36
26994143--26994232	46	2.0	46	97	0	171	34	22	18	24	1.96
26997060--26997124	21	3.1	21	77	18	73	9	18	1	70	1.21
26998506--26998598	46	2.0	46	95	0	168	32	22	21	23	1.98
27001723--27001769	18	2.6	18	80	6	51	10	25	2	61	1.39
27001922--27001965	18	2.4	18	80	0	52	13	22	4	59	1.53
27002047--27002098	6	8.5	6	79	12	61	3	17	1	76	1.02
27002046--27002099	13	4.5	12	80	15	67	3	20	1	74	1.07
27002049--27002101	24	2.2	24	93	0	88	3	18	1	75	1.05
27003295--27003384	27	3.3	27	85	0	135	21	16	22	40	1.92
27003308--27003424	27	4.4	27	75	6	94	25	17	18	38	1.92
27003365--27003419	26	2.1	26	82	0	65	30	12	18	38	1.88
27004559--27004603	24	2.0	23	86	8	65	26	40	2	31	1.68
27011068--27011124	10	5.6	10	72	4	51	21	22	17	38	1.93
27011062--27011109	20	2.5	20	75	3	53	27	22	16	33	1.96
27016311--27016359	18	2.9	16	77	19	55	73	4	4	18	1.15
27016313--27016360	25	1.9	25	83	8	62	72	4	4	18	1.17
27017261--27017321	31	2.0	31	100	0	122	16	34	13	36	1.87
27017264--27017331	31	2.2	31	89	5	102	19	36	11	32	1.88
27018006--27018054	25	1.9	26	91	4	82	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27019426--27019492	34	2.0	34	90	0	107	32	16	8	41	1.79
27028770--27029022	126	2.0	126	100	0	506	30	15	15	38	1.89
27033015--27033081	28	2.4	28	90	5	100	29	25	20	23	1.99
27033574--27033705	27	4.9	27	74	7	124	20	18	19	41	1.90
27033572--27033705	54	2.5	54	85	0	178	20	17	20	41	1.91
27067013--27067175	51	3.2	52	83	6	215	25	25	12	35	1.92
27067027--27067175	54	2.9	51	82	5	199	26	24	14	34	1.94
27069521--27069640	64	1.9	64	82	0	150	35	5	24	35	1.79
27071658--27071828	69	2.4	69	79	9	177	36	14	12	36	1.84
27071774--27071927	69	2.2	69	77	3	166	37	12	11	38	1.81
27073106--27073446	62	5.5	61	82	4	360	23	26	25	24	2.00
27074139--27074181	21	2.0	21	86	0	59	65	2	25	6	1.30
27074145--27074206	27	2.2	30	82	8	76	69	1	22	6	1.20
27089491--27089540	6	9.0	6	85	10	54	4	16	0	80	0.87
27096264--27096334	22	3.2	22	73	11	63	18	1	32	47	1.57
27096276--27096351	23	3.3	23	76	7	66	19	2	31	46	1.64
27098699--27098769	36	2.0	36	97	0	133	36	22	19	21	1.95
27103084--27103180	6	16.2	6	71	0	50	11	17	2	69	1.28
27103109--27103178	18	3.9	18	77	7	70	12	15	1	70	1.25
27108620--27108678	20	3.0	19	77	5	55	37	11	28	22	1.89
27108766--27108820	20	2.7	21	83	10	62	30	12	27	29	1.93
27108782--27108820	10	3.7	11	86	10	55	30	12	25	30	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27109951--27109997	24	1.9	25	82	4	60	42	4	25	27	1.73
27111125--27111241	40	2.6	45	77	16	136	47	10	10	32	1.71
27111148--27111233	40	2.2	40	93	0	145	45	12	10	31	1.76
27113265--27113306	16	2.6	17	77	14	52	11	19	0	69	1.19
27121777--27121820	18	2.4	19	81	11	56	20	11	2	65	1.35
27123282--27123338	20	2.8	20	78	0	60	35	17	29	17	1.93
27123292--27123360	30	2.3	30	80	7	79	34	13	33	18	1.90
27125154--27125201	10	4.6	10	94	5	78	18	0	8	72	1.08
27125166--27125210	20	2.2	20	84	7	56	22	2	6	68	1.24
27127898--27128023	40	3.2	40	90	0	207	46	14	7	30	1.73
27137370--27137403	11	3.1	11	91	0	50	70	11	0	17	1.16
27142545--27142655	39	2.9	38	81	4	132	43	11	8	36	1.71
27144026--27144084	29	2.0	31	83	6	77	33	15	22	28	1.94
27147771--27147809	10	3.8	10	86	3	51	79	2	15	2	0.95
27147771--27147809	20	1.9	21	89	5	62	79	2	15	2	0.95
27157632--27157686	15	3.8	14	79	15	67	72	1	21	3	1.09
27162912--27163039	64	2.0	64	100	0	256	28	20	14	37	1.91
27166894--27167025	50	2.6	51	81	3	158	38	12	15	33	1.85
27173549--27173634	29	3.1	28	84	12	90	33	8	12	45	1.72
27173562--27173634	29	2.5	29	95	0	128	31	9	13	45	1.76
27177730--27177802	37	1.9	37	84	13	96	32	23	1	42	1.63
27177876--27177965	45	2.0	45	93	0	153	33	24	17	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27177978--27178151	50	3.5	50	94	2	287	31	27	16	25	1.96
27186842--27186903	10	5.9	10	74	10	52	33	32	3	30	1.74
27186842--27186904	21	3.0	21	88	2	90	33	33	3	30	1.74
27187215--27187289	18	4.3	16	67	17	51	73	6	6	13	1.24
27187251--27187290	16	2.4	16	87	4	62	67	2	10	20	1.31
27196819--27196950	50	2.6	51	86	3	194	38	12	15	33	1.85
27197323--27197390	33	2.1	33	88	5	102	25	27	23	23	2.00
27227043--27227067	7	3.6	7	100	0	50	0	12	12	76	1.04
27229372--27229401	13	2.2	14	94	5	53	33	16	20	30	1.94
27235461--27235789	56	6.2	54	79	11	344	25	30	17	26	1.98
27235489--27235835	50	6.8	49	77	10	261	25	30	18	25	1.98
27235505--27235835	104	3.2	103	80	6	438	25	30	18	25	1.98
27235756--27235858	48	2.1	48	81	0	125	27	28	20	24	1.99
27237729--27237770	17	2.5	17	92	0	66	30	9	7	52	1.61
27238900--27238952	23	2.3	23	93	0	88	26	9	22	41	1.84
27243828--27243860	9	3.8	9	88	8	50	54	3	0	42	1.15
27250177--27250238	19	3.1	20	81	4	72	66	1	24	8	1.28
27250180--27250233	20	2.7	20	83	8	74	66	1	22	9	1.30
27258650--27258886	51	4.7	51	81	4	273	26	18	25	29	1.98
27258651--27258886	101	2.3	100	90	5	368	25	18	25	30	1.98
27264607--27264657	27	1.9	27	84	4	68	27	25	15	31	1.96
27267922--27267992	22	3.2	22	78	11	74	36	18	28	16	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27282077--27282178	44	2.2	44	79	8	107	31	10	12	45	1.77
27285502--27285538	20	1.9	20	88	5	58	72	0	21	5	1.04
27288646--27288749	44	2.3	44	80	8	111	31	10	13	44	1.78
27290494--27290626	50	2.7	49	93	3	216	26	22	31	19	1.98
27290961--27291104	45	3.2	44	76	15	143	27	13	22	36	1.92
27294958--27294986	13	2.1	14	93	6	51	68	13	6	10	1.37
27301885--27301934	21	2.4	21	87	9	68	22	20	26	32	1.98
27301898--27301937	21	1.9	21	100	0	80	22	22	25	30	1.99
27304790--27304843	21	2.7	21	82	5	58	33	27	24	14	1.94
27304804--27304865	21	3.0	21	83	4	72	32	25	30	11	1.91
27309632--27309679	16	3.1	15	77	19	53	2	14	6	77	1.06
27309709--27309746	10	3.7	11	83	16	55	52	0	0	47	1.00
27309706--27309746	15	2.7	16	85	11	59	51	0	0	48	1.00
27309840--27309877	20	1.9	20	100	0	76	15	15	5	63	1.48
27309726--27310014	148	2.0	148	97	0	551	38	15	6	40	1.72
27311007--27311054	25	1.9	25	87	8	71	47	6	2	43	1.40
27310934--27311179	122	2.0	123	99	0	485	40	5	9	44	1.61
27311127--27311181	25	2.2	25	80	9	67	50	5	1	41	1.36
27311129--27311176	25	1.9	25	87	8	71	47	6	2	43	1.40
27313141--27313178	20	1.9	20	100	0	76	15	15	5	63	1.48
27313052--27320271	148	48.8	148	100	0	14440	37	14	6	41	1.73
27313289--27313326	20	1.9	20	100	0	76	15	15	5	63	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27313437--27313474	20	1.9	20	100	0	76	15	15	5	63	1.48
27313585--27313622	20	1.9	20	100	0	76	15	15	5	63	1.48
27313733--27313770	20	1.9	20	100	0	76	15	15	5	63	1.48
27313881--27313918	20	1.9	20	100	0	76	15	15	5	63	1.48
27314029--27314066	20	1.9	20	100	0	76	15	15	5	63	1.48
27314177--27314214	20	1.9	20	100	0	76	15	15	5	63	1.48
27314325--27314362	20	1.9	20	100	0	76	15	15	5	63	1.48
27314473--27314510	20	1.9	20	100	0	76	15	15	5	63	1.48
27314621--27314658	20	1.9	20	100	0	76	15	15	5	63	1.48
27314769--27314806	20	1.9	20	100	0	76	15	15	5	63	1.48

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136