genome.fa.s10.2.7.7.80.10.50.1000.119.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  119  of  136  ( 16211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40421772--40422024	113	2.2	114	81	4	289	49	17	13	20	1.80
40429545--40429605	27	2.3	27	75	8	63	31	1	3	63	1.20
40431216--40431252	13	2.7	14	83	8	58	70	2	0	27	1.01
40438290--40438316	9	3.0	9	100	0	54	22	0	0	77	0.76
40443764--40443859	24	3.9	24	78	8	102	31	1	5	62	1.24
40446199--40446224	11	2.4	11	100	0	52	0	11	0	88	0.52
40446322--40446348	4	6.8	4	100	0	54	25	48	0	25	1.52
40450201--40450242	20	2.1	20	86	0	57	45	0	7	47	1.30
40452023--40452196	85	2.0	86	98	1	341	50	5	3	40	1.43
40456839--40457196	132	2.8	128	90	4	562	30	22	19	27	1.98
40457182--40457533	44	8.3	43	72	11	228	27	21	22	28	1.99
40457255--40457447	40	4.6	42	71	14	139	29	21	21	27	1.99
40457573--40457747	50	3.5	50	73	1	154	26	22	20	30	1.98
40465771--40465814	18	2.4	18	88	7	63	56	0	11	31	1.35
40470108--40470148	21	2.0	21	86	13	59	56	2	2	39	1.26
40475680--40475723	21	2.1	21	91	0	70	72	9	0	18	1.10
40478124--40478177	22	2.5	22	71	0	54	61	11	9	18	1.55
40478163--40478196	11	3.1	11	86	0	50	70	23	0	5	1.09
40479179--40479290	43	2.6	43	79	1	134	33	25	13	27	1.93
40482766--40482885	61	2.0	62	96	1	224	11	17	15	55	1.68
40483496--40483687	58	3.3	59	86	6	266	25	17	19	37	1.93
40484845--40484879	18	2.0	17	88	5	52	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40485043--40485095	16	3.3	16	91	0	88	22	32	5	39	1.78
40485666--40485718	23	2.2	24	87	9	74	43	11	11	33	1.76
40488285--40488329	6	7.3	6	80	5	54	44	13	20	22	1.85
40488309--40488413	45	2.3	45	87	6	151	41	17	17	23	1.89
40488613--40488720	40	2.7	41	83	8	116	39	18	7	34	1.79
40488652--40488721	20	3.5	19	74	16	61	41	18	5	34	1.74
40490026--40490210	101	1.8	102	90	3	302	24	18	27	30	1.98
40490020--40490218	51	3.9	50	79	5	222	24	18	28	29	1.98
40490132--40490212	26	3.2	26	64	28	64	25	14	27	32	1.95
40490028--40490218	102	1.9	100	89	3	267	24	18	27	29	1.98
40490214--40490312	46	2.2	43	82	12	119	23	19	25	32	1.97
40490435--40490466	16	2.0	16	93	0	55	59	0	15	25	1.36
40498331--40498377	22	2.1	22	88	0	67	48	0	2	48	1.13
40498473--40498497	13	1.9	13	100	0	50	44	0	0	56	0.99
40504857--40504898	21	2.0	21	85	0	57	59	11	14	14	1.61
40506575--40506647	25	2.8	25	75	22	71	60	1	10	27	1.39
40508118--40508232	44	2.8	40	83	9	142	24	20	24	30	1.99
40508153--40508580	132	3.3	129	80	6	506	26	23	20	30	1.98
40508235--40508603	132	2.9	127	82	9	523	27	22	19	31	1.98
40508844--40509236	87	4.5	87	94	0	671	25	23	22	28	1.99
40515038--40515120	26	3.2	25	81	6	76	40	33	7	18	1.78
40519875--40520001	50	2.5	50	83	2	166	22	29	22	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40522262--40522787	85	6.2	85	100	0	1052	47	6	2	43	1.42
40525398--40525989	113	5.3	112	75	9	497	27	16	19	36	1.93
40525398--40525655	112	2.4	108	83	6	299	25	20	18	34	1.96
40525777--40525983	114	1.9	109	84	5	279	28	15	19	35	1.93
40526948--40527012	22	3.2	22	60	31	54	43	9	3	44	1.51
40526932--40527011	38	2.1	38	100	0	160	46	10	2	41	1.51
40526945--40527006	19	3.3	19	65	17	56	45	9	3	41	1.53
40527055--40527164	38	2.9	38	100	0	220	46	10	2	40	1.53
40527074--40527137	22	3.2	22	60	32	52	43	9	3	43	1.52
40527055--40527151	19	5.1	19	62	18	58	49	10	2	38	1.49
40527160--40527957	108	7.3	107	78	6	825	30	18	17	33	1.94
40531085--40531115	9	3.4	9	90	0	53	41	22	9	25	1.84
40535547--40535581	15	2.3	15	90	5	52	8	8	0	82	0.83
40563203--40563228	4	6.5	4	100	0	52	0	23	0	76	0.78
40571553--40571585	13	2.4	14	85	10	50	51	0	15	33	1.43
40574498--40574577	39	2.1	39	100	0	160	35	15	20	30	1.93
40596166--40596213	21	2.2	23	85	7	64	64	4	20	10	1.41
40598370--40598411	11	4.0	11	81	12	52	35	0	2	61	1.09
40598667--40598729	31	2.1	30	90	3	99	55	15	3	25	1.55
40621771--40621813	18	2.3	19	84	4	52	30	4	2	62	1.28
40621779--40621819	19	2.2	19	86	8	57	29	0	2	68	1.03
40625476--40625527	23	2.3	23	80	6	61	42	0	3	53	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40627169--40627409	119	2.0	122	93	4	418	38	12	21	28	1.89
40627882--40627974	25	3.4	25	67	25	71	33	8	5	52	1.55
40630349--40630380	9	3.6	9	95	0	55	43	21	9	25	1.82
40630396--40630458	17	3.5	17	69	12	54	49	12	3	34	1.57
40630387--40630461	37	2.0	37	92	0	123	45	13	5	36	1.66
40630589--40630705	39	3.0	39	97	1	218	17	2	29	50	1.60
40630686--40630710	13	1.9	13	100	0	50	12	0	48	40	1.40
40630958--40631258	101	3.0	99	79	7	277	31	15	23	29	1.95
40631101--40631256	33	4.7	33	97	0	285	28	15	26	29	1.96
40631101--40631274	66	2.6	66	92	1	233	29	16	25	28	1.96
40631099--40631322	99	2.3	99	84	5	283	28	16	27	27	1.97
40632869--40632932	5	13.0	5	98	1	121	40	0	0	59	0.97
40633676--40633756	22	3.5	22	78	11	83	16	23	19	40	1.90
40639270--40639296	4	6.8	4	100	0	54	51	25	0	22	1.48
40643539--40643596	20	3.0	20	71	14	59	27	5	0	67	1.12
40644658--40644699	21	2.0	21	100	0	84	33	19	19	28	1.96
40662062--40662087	2	13.0	2	100	0	52	50	0	0	50	1.00
40667132--40667170	2	19.5	2	100	0	78	48	0	51	0	1.00
40670609--40670649	22	1.9	22	85	5	57	70	9	4	14	1.30
40673728--40673776	15	3.4	15	83	10	59	12	6	40	40	1.67
40674232--40674565	50	6.7	50	70	5	147	26	21	20	31	1.98
40674405--40674785	50	7.6	50	70	5	286	24	21	23	30	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40674275--40674794	199	2.6	200	83	4	622	24	22	21	30	1.99
40674232--40674794	100	5.7	100	83	3	591	25	22	21	31	1.98
40674890--40675572	88	7.8	88	91	0	1105	24	24	24	27	2.00
40675648--40676627	327	3.0	327	96	0	1800	27	20	18	33	1.96
40677454--40677487	7	5.0	7	85	7	52	14	11	0	73	1.10
40677454--40677487	13	2.5	14	90	4	52	14	11	0	73	1.10
40690181--40690228	25	2.0	24	83	4	60	39	18	22	18	1.92
40690191--40690258	24	2.8	24	86	6	84	38	16	23	22	1.93
40690817--40690856	21	1.9	21	90	10	64	45	12	0	42	1.42
40690826--40690867	21	2.0	21	85	0	57	40	19	2	38	1.64
40693268--40693315	21	2.3	22	82	13	57	39	0	2	58	1.10
40693457--40693550	31	2.9	32	77	3	91	47	8	21	22	1.77
40702202--40702250	17	3.0	16	77	11	55	69	2	0	28	1.00
40709835--40710073	80	3.0	80	78	12	217	38	11	7	42	1.69
40710742--40710787	25	1.9	23	86	8	65	30	0	2	67	1.03
40715496--40715534	19	2.1	19	90	9	62	38	0	0	61	0.96
40715498--40715546	22	2.3	21	86	10	64	38	0	0	61	0.96
40715604--40715728	27	4.6	27	83	0	142	24	22	28	24	1.99
40720145--40720277	60	2.2	60	87	1	185	57	12	0	28	1.41
40720357--40720394	16	2.4	16	82	13	51	0	26	0	73	0.83
40720358--40720394	19	1.9	19	94	0	65	0	24	0	75	0.80
40720536--40720592	27	2.1	27	93	0	96	19	26	26	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40720766--40720799	17	2.1	17	94	5	61	52	2	0	44	1.16
40727283--40727330	26	1.9	24	84	16	62	54	8	8	29	1.60
40733241--40733298	20	2.9	21	73	21	61	46	5	5	43	1.48
40737259--40737314	22	2.5	22	100	0	112	32	17	14	35	1.90
40745327--40745363	3	12.3	3	94	0	65	29	0	2	67	1.04
40746350--40746447	31	3.2	31	64	30	82	30	7	25	36	1.83
40746327--40746452	62	2.0	62	100	0	252	32	7	23	35	1.84
40757087--40757156	20	3.7	19	72	16	65	64	0	27	8	1.22
40758022--40758123	53	2.0	51	84	5	134	45	7	22	24	1.79
40758534--40758584	20	2.5	22	72	18	56	33	0	0	66	0.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136