genome.fa.s10.2.7.7.80.10.50.1000.128.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  128  of  136  ( 16211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44000400--44000454	26	2.1	27	82	3	67	29	3	0	67	1.08
44005256--44005321	29	2.2	30	86	5	98	36	6	24	33	1.80
44007402--44007494	45	2.1	45	91	0	150	37	2	13	46	1.56
44007663--44007816	42	3.7	42	83	0	182	19	22	16	41	1.90
44007734--44007809	21	3.6	21	77	8	66	21	27	11	39	1.88
44022107--44022149	21	2.0	22	86	8	63	37	39	4	18	1.72
44022812--44022837	5	5.2	5	100	0	52	0	19	0	80	0.71
44029667--44029727	21	2.9	21	67	0	59	16	14	19	49	1.80
44029713--44029774	21	3.0	21	78	0	79	14	27	17	40	1.89
44029656--44029778	42	2.9	42	80	4	149	15	21	18	44	1.86
44030969--44031011	23	2.0	20	82	13	50	30	4	18	46	1.69
44031426--44031570	71	2.0	71	86	2	202	33	21	20	25	1.97
44043611--44043837	22	10.3	22	100	0	454	27	32	0	40	1.57
44043883--44043946	31	2.1	31	93	0	110	34	0	0	65	0.93
44044019--44044091	25	3.1	26	74	16	70	31	0	4	64	1.12
44044699--44044723	7	3.6	7	100	0	50	28	0	12	60	1.32
44045375--44045409	18	1.9	18	88	0	52	25	34	8	31	1.86
44045941--44046058	28	4.1	28	90	3	182	48	26	0	25	1.52
44047081--44047450	130	2.9	130	98	0	715	35	20	13	30	1.92
44051519--44051588	31	2.3	31	80	5	79	52	12	11	22	1.71
44054050--44054147	28	3.0	35	78	20	138	39	6	24	29	1.79
44098159--44098257	45	2.2	45	94	1	171	43	11	14	31	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44100773--44100904	65	2.0	65	95	0	237	32	13	7	46	1.72
44100779--44100879	33	3.1	33	67	23	95	30	12	8	47	1.72
44101027--44101218	62	3.1	60	83	5	224	13	30	14	41	1.84
44106538--44106565	4	7.0	4	100	0	56	50	25	0	25	1.50
44114814--44114853	18	2.1	18	86	9	53	25	0	0	75	0.81
44114817--44114920	51	2.0	52	96	1	192	32	3	0	63	1.12
44119026--44119082	24	2.4	24	82	8	71	47	1	12	38	1.51
44120330--44120358	9	3.2	9	100	0	58	0	10	0	89	0.48
44123532--44123628	11	9.4	11	70	23	52	58	0	4	37	1.17
44123541--44123577	19	2.0	19	94	5	67	54	0	2	43	1.14
44123532--44123617	30	2.9	30	81	10	106	60	0	3	36	1.14
44123541--44123604	18	3.4	19	71	23	55	60	0	1	37	1.06
44132995--44133064	27	2.9	24	83	16	92	54	14	0	31	1.40
44132997--44133090	48	2.0	48	83	8	120	55	13	0	30	1.39
44134046--44134224	92	2.0	89	82	5	216	35	20	11	32	1.88
44135437--44135650	51	4.2	51	91	0	347	28	23	15	32	1.95
44141736--44142053	51	6.2	51	91	0	501	29	23	15	30	1.96
44142956--44143010	26	2.1	26	80	12	60	21	3	5	69	1.25
44147698--44147744	19	2.5	19	79	3	51	25	6	4	63	1.36
44152461--44152485	3	8.3	3	100	0	50	68	0	0	32	0.90
44154812--44154844	16	2.1	16	94	0	57	45	9	6	39	1.61
44158085--44158168	41	2.0	43	95	4	154	15	16	11	55	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44160909--44160943	3	11.7	3	100	0	70	0	31	0	68	0.90
44161445--44161488	21	2.1	21	86	0	61	31	11	18	38	1.86
44164020--44164062	19	2.3	18	80	7	50	34	0	9	55	1.32
44167578--44167619	21	2.0	21	85	0	57	40	11	9	38	1.75
44169076--44169170	44	2.1	46	84	11	124	60	1	2	36	1.16
44175530--44175594	30	2.2	29	84	10	87	24	12	10	52	1.71
44189952--44190019	35	1.9	35	85	5	93	32	8	14	44	1.76
44191307--44191371	27	2.4	28	94	2	114	41	10	0	47	1.38
44191424--44191509	27	3.2	27	81	6	93	30	22	30	17	1.96
44191443--44191511	27	2.6	27	90	0	102	31	21	30	15	1.95
44192091--44192174	37	2.3	37	100	0	168	47	0	14	38	1.44
44192091--44192174	18	4.5	19	79	5	100	47	0	14	38	1.44
44192321--44192397	27	2.9	26	84	3	91	15	33	19	31	1.93
44192326--44192391	26	2.5	27	87	2	89	15	31	22	30	1.95
44192448--44192505	28	2.1	28	93	6	102	53	0	6	39	1.28
44200269--44200373	32	3.4	29	74	8	77	40	12	12	34	1.80
44201836--44201868	14	2.3	15	89	5	50	48	0	3	48	1.17
44201824--44201868	15	3.1	15	80	6	56	46	0	4	48	1.22
44205052--44205097	17	2.8	16	80	6	56	65	2	13	19	1.37
44217858--44217902	23	1.9	24	86	4	65	37	11	2	48	1.51
44218691--44218715	13	1.9	13	100	0	50	28	0	0	72	0.86
44221981--44222225	122	2.0	123	99	0	483	36	8	18	36	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44227838--44227894	28	2.0	28	86	6	80	52	0	3	43	1.18
44235548--44235832	100	2.8	100	96	1	509	33	20	14	31	1.92
44235943--44235996	27	2.0	27	100	0	108	48	11	14	25	1.77
44243447--44243503	28	2.0	28	86	6	80	52	0	3	43	1.18
44248783--44248839	28	2.0	28	86	6	80	52	0	3	43	1.18
44248887--44248965	6	12.7	6	70	11	52	72	6	20	1	1.14
44248935--44248968	17	2.0	17	100	0	68	76	0	23	0	0.79
44249871--44249917	24	2.0	24	84	16	62	31	0	17	51	1.46
44250070--44250206	40	3.5	40	74	10	131	25	14	24	35	1.94
44254523--44254570	25	1.9	25	87	8	71	54	0	0	45	0.99
44256765--44256812	25	1.9	25	87	8	71	54	0	0	45	0.99
44264888--44264936	21	2.3	20	82	6	53	67	10	14	8	1.42
44273353--44273400	13	3.7	13	82	0	51	37	25	8	29	1.85
44280023--44280065	21	2.0	21	100	0	86	13	39	32	13	1.85
44294723--44294824	52	2.0	51	86	5	143	36	22	10	30	1.88
44313600--44313644	25	1.9	24	82	13	58	40	2	0	57	1.11
44321497--44321557	15	4.1	16	73	25	62	24	11	24	39	1.88
44327080--44327106	2	13.5	2	100	0	54	48	0	0	51	1.00
44327283--44327321	11	3.5	11	89	0	60	23	2	5	69	1.21
44329671--44329707	18	2.1	18	89	0	56	37	0	2	59	1.12
44331367--44331411	18	2.5	18	89	7	65	55	0	0	44	0.99
44332978--44333040	20	3.2	19	72	16	56	31	3	3	61	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44335562--44335630	29	2.3	29	85	5	84	47	13	17	21	1.81
44337653--44337735	22	3.5	24	80	8	91	39	21	22	15	1.91
44338764--44338858	40	2.3	40	90	3	145	0	28	8	63	1.24
44338876--44338926	3	19.0	3	74	22	51	60	0	0	39	0.97
44338874--44338929	8	6.8	8	77	22	62	60	0	0	39	0.97
44338868--44338929	5	12.2	5	79	20	67	59	0	0	40	0.97
44338879--44338938	13	4.4	13	76	12	57	61	1	0	36	1.06
44338868--44338938	37	1.9	37	83	11	92	60	1	0	38	1.06
44350311--44350530	109	2.1	104	86	6	298	21	11	22	44	1.84
44353667--44353696	2	15.0	2	92	0	51	50	46	0	3	1.18
44357577--44357955	66	5.7	66	91	1	589	40	12	23	23	1.89
44357964--44358015	21	2.5	21	83	0	68	30	19	19	30	1.96
44358006--44358154	66	2.3	66	93	0	253	42	14	20	21	1.88
44357828--44358192	174	2.1	174	87	1	525	39	15	22	23	1.91
44358138--44358187	21	2.4	21	86	0	73	34	14	24	28	1.93
44358931--44359059	33	3.9	33	93	0	213	41	14	15	27	1.86
44359009--44359849	348	2.4	348	95	0	1502	31	17	19	31	1.95
44363807--44363874	34	2.0	34	97	0	127	17	27	5	48	1.70
44380463--44380509	3	15.7	3	100	0	94	68	0	0	31	0.90
44380547--44380641	47	2.0	48	97	2	183	31	21	18	28	1.97
44380864--44380966	36	2.9	35	81	8	127	18	5	25	50	1.69
44380888--44380950	20	3.3	20	69	24	64	17	4	25	52	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44381146--44381191	23	2.0	24	86	4	67	26	21	6	45	1.76
44381592--44381647	21	2.6	22	75	8	62	17	10	39	32	1.84
44381645--44381695	21	2.4	21	83	6	68	13	11	39	35	1.82
44382367--44382416	25	2.0	25	84	3	66	50	8	8	34	1.61
44385472--44385616	65	2.2	65	88	0	209	35	22	19	22	1.96
44386579--44386638	30	2.0	30	83	6	77	20	16	0	63	1.31
44392237--44392302	25	2.6	27	81	13	86	36	21	21	21	1.95
44392344--44392486	65	2.2	65	89	0	214	34	20	20	23	1.96
44394934--44394991	18	3.2	18	87	0	80	62	12	5	20	1.49
44394934--44394973	6	6.7	6	94	0	71	65	15	2	17	1.39

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136