genome.fa.s10.2.7.7.80.10.50.1000.16.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  16  of  136  ( 16211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4947489--4947565	37	2.1	37	87	4	111	49	1	1	48	1.17
4947932--4948001	29	2.4	30	83	9	92	17	1	27	54	1.51
4948287--4948342	21	2.8	19	87	10	85	39	10	14	35	1.81
4948287--4948365	19	3.7	22	78	14	69	37	8	15	37	1.78
4948687--4948744	22	2.6	22	81	7	64	41	17	5	36	1.72
4948723--4948777	21	2.7	21	91	5	87	36	12	10	40	1.79
4949064--4949133	28	2.5	28	83	9	88	54	27	1	17	1.51
4949500--4949576	37	2.1	37	85	9	104	49	1	1	48	1.17
4952156--4952198	16	2.7	16	82	7	52	44	2	16	37	1.60
4955058--4955112	28	2.0	28	82	10	69	63	7	10	18	1.49
4963547--4963601	28	2.0	28	82	10	69	63	7	10	18	1.49
4965056--4965102	20	2.4	19	80	13	51	17	4	14	63	1.45
4965355--4965408	25	2.2	24	83	3	63	33	12	29	24	1.92
4966391--4966417	9	3.0	9	100	0	54	11	11	11	66	1.45
4968142--4968254	41	2.7	42	81	4	129	27	16	26	29	1.97
4970775--4970802	13	2.2	13	100	0	56	28	17	14	39	1.89
4975402--4975451	26	1.9	26	88	8	75	36	22	4	38	1.73
4976578--4976638	29	2.1	29	90	6	97	47	16	8	27	1.75
4977134--4978006	437	2.0	438	99	0	1739	36	14	16	33	1.89
4995063--4995164	34	3.2	31	67	23	77	41	3	1	52	1.31
4998090--4998131	20	2.1	20	100	0	84	38	19	9	33	1.84
4999035--4999350	157	2.0	158	99	0	625	44	18	13	23	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5003871--5003998	19	7.0	19	80	8	158	36	13	10	39	1.80
5003871--5003979	33	3.2	33	88	6	137	36	12	11	39	1.79
5003889--5003998	52	2.1	52	98	0	211	36	13	10	39	1.80
5003927--5003979	14	3.4	14	77	22	61	35	15	11	37	1.83
5010012--5010081	19	3.5	19	86	7	86	40	15	7	37	1.75
5010618--5010746	45	2.9	45	85	0	177	24	25	23	27	2.00
5012109--5012208	44	2.3	44	89	3	148	29	24	21	26	1.99
5012219--5012609	88	4.4	88	90	0	611	20	23	27	28	1.99
5012290--5012604	44	7.2	44	60	7	127	20	23	27	27	1.99
5013942--5013974	14	2.3	15	89	5	50	27	33	12	27	1.92
5014801--5014861	26	2.3	26	83	5	70	57	4	14	22	1.57
5019737--5019767	14	2.2	14	94	0	53	12	0	9	77	0.99
5019815--5020002	51	3.7	52	77	9	190	29	28	18	23	1.98
5025790--5025821	16	2.0	16	100	0	64	25	12	0	62	1.30
5026050--5026238	49	3.8	51	77	10	194	30	27	18	23	1.98
5026047--5026232	100	1.9	100	89	5	286	30	27	18	23	1.98
5031168--5031244	35	2.2	35	83	4	93	22	31	23	23	1.99
5034821--5034858	11	3.3	12	82	10	53	60	0	0	39	0.97
5035792--5035864	32	2.2	34	85	7	96	30	10	5	53	1.58
5041976--5042121	74	2.0	74	83	0	184	40	11	3	44	1.58
5042874--5043405	264	2.0	264	98	0	1037	42	10	17	29	1.83
5052828--5052904	29	2.7	29	95	4	138	31	23	23	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5052856--5052959	25	4.0	26	80	7	86	30	18	25	25	1.98
5052968--5053041	24	3.0	25	75	15	64	32	20	28	18	1.96
5053019--5053123	24	4.3	25	75	7	83	34	20	27	18	1.95
5064161--5064199	17	2.3	17	86	0	51	20	46	20	12	1.83
5064174--5064233	17	3.5	17	80	8	77	18	41	26	13	1.87
5065948--5066010	30	2.1	30	96	0	117	17	26	31	23	1.97
5070202--5070344	25	5.8	25	71	15	102	31	20	28	19	1.97
5074463--5074528	20	3.3	20	64	8	53	15	31	18	34	1.92
5074447--5074534	40	2.2	40	95	0	158	20	27	19	32	1.97
5086457--5086492	12	2.8	13	87	8	56	5	13	0	80	0.88
5088097--5088126	11	2.7	11	94	0	51	33	0	10	56	1.32
5089844--5089888	23	2.0	23	81	0	54	62	15	0	22	1.33
5090068--5090178	19	5.6	19	87	7	159	40	16	7	36	1.76
5090068--5090182	38	2.9	38	93	5	185	40	16	7	35	1.78
5093006--5093046	18	2.2	20	86	8	59	19	14	19	46	1.84
5096388--5096436	25	1.9	26	83	4	64	36	0	4	59	1.17
5097613--5097652	16	2.7	14	85	11	53	57	0	0	42	0.98
5100660--5100793	69	2.0	67	85	8	182	51	5	4	38	1.47
5104852--5104898	24	2.0	24	91	0	76	17	34	17	31	1.92
5105832--5106183	175	2.0	175	97	0	659	33	20	15	30	1.93
5122290--5122329	20	2.0	20	90	0	62	25	7	37	30	1.83
5132105--5132172	12	5.7	12	82	0	82	10	26	38	25	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5133324--5133401	39	2.0	39	100	0	156	30	17	12	38	1.88
5133398--5133485	25	3.6	25	78	7	81	32	20	19	27	1.97
5137392--5137447	22	2.6	22	83	8	62	32	16	32	19	1.94
5140042--5140096	27	2.0	27	100	0	110	25	10	14	49	1.76
5140155--5140186	2	15.5	2	93	6	55	46	50	0	3	1.17
5143484--5143855	185	2.0	185	99	0	735	27	15	22	34	1.94
5146974--5147003	15	1.9	16	93	6	53	43	0	0	56	0.99
5147013--5147490	238	2.0	239	99	0	949	34	12	9	43	1.75
5149013--5149050	3	12.7	3	94	0	67	68	0	31	0	0.90
5149601--5149918	161	2.0	161	94	0	557	24	17	16	41	1.89
5151806--5151910	50	2.1	49	85	5	140	25	20	32	20	1.98
5155178--5155212	17	2.0	18	88	5	54	45	2	17	34	1.63
5158660--5158695	17	2.1	18	89	5	56	30	0	5	63	1.17
5161058--5161156	50	2.0	51	84	6	130	35	14	11	39	1.81
5165288--5165336	20	2.5	20	93	0	80	20	14	10	55	1.68
5174873--5174897	13	1.9	13	100	0	50	16	8	20	56	1.65
5180725--5180764	20	2.0	21	90	5	64	35	17	25	22	1.95
5184721--5184772	20	2.8	18	76	21	54	51	3	3	40	1.38
5184765--5184814	24	2.1	23	82	10	57	58	6	2	34	1.34
5186386--5186416	16	1.9	16	93	0	53	74	3	6	16	1.16
5203287--5203351	27	2.4	26	80	16	71	36	24	23	15	1.93
5203481--5203575	27	3.5	27	85	5	129	23	14	25	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5205528--5205651	46	2.6	48	89	6	198	50	1	6	41	1.38
5205546--5205618	23	3.2	23	65	27	64	49	2	9	38	1.50
5208137--5208207	35	2.0	36	97	2	135	32	22	5	39	1.77
5213948--5214132	27	7.0	26	83	7	212	44	20	17	17	1.87
5213948--5214132	54	3.5	54	87	2	250	44	20	17	17	1.87
5213948--5214132	81	2.3	78	86	3	244	44	20	17	17	1.87
5224656--5224749	26	3.6	26	77	7	82	22	22	20	35	1.96
5224844--5224908	33	2.0	33	87	0	94	24	24	23	27	2.00
5230675--5230751	33	2.3	33	84	2	91	24	23	22	29	1.99
5231209--5231237	13	2.1	14	93	6	51	55	13	10	20	1.68
5253538--5253956	206	2.0	207	99	0	822	40	5	7	46	1.56
5257712--5258005	163	1.8	162	85	3	421	39	24	9	26	1.85
5271392--5271576	51	3.7	50	78	5	167	25	18	25	30	1.98
5271580--5271678	46	2.2	43	82	12	119	24	19	23	33	1.97
5271802--5271833	16	2.0	16	93	0	55	59	0	15	25	1.36
5273250--5273282	5	6.6	5	100	0	66	36	0	0	63	0.95
5283552--5283619	33	2.1	33	100	0	136	36	11	23	27	1.90
5284872--5284898	13	2.1	13	100	0	54	66	0	0	33	0.92
5287219--5287349	34	3.8	34	83	6	174	39	0	16	43	1.48
5287464--5287798	125	2.7	125	86	1	483	37	19	16	26	1.93
5290986--5291076	34	2.7	34	86	5	130	42	0	16	40	1.48
5291142--5291416	127	2.2	127	90	0	426	36	16	17	30	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5294886--5294923	18	2.1	18	95	0	67	39	10	26	23	1.87
5304191--5304241	6	8.5	6	82	18	54	15	5	0	78	0.93
5306975--5307123	37	4.0	37	100	0	298	40	18	18	21	1.91
5311145--5311185	20	2.0	21	86	9	59	39	0	4	56	1.21
5311618--5311876	42	6.1	43	81	4	249	27	28	17	26	1.98
5315500--5315632	40	3.4	40	77	8	123	35	21	21	21	1.96
5315660--5315820	41	4.0	41	89	2	236	18	22	31	27	1.97
5315931--5315982	22	2.4	20	79	17	59	46	5	3	44	1.45
5316462--5316526	14	4.6	13	77	11	58	15	3	49	32	1.60
5316462--5316537	14	5.3	14	75	7	55	17	2	46	34	1.62

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136