genome.fa.s10.2.7.7.80.10.50.1000.35.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  35  of  136  ( 16211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11418047--11418190	49	2.9	49	89	1	207	25	14	28	31	1.95
11421099--11421228	26	5.2	26	73	10	103	16	23	23	35	1.95
11421178--11421228	24	2.1	24	88	3	75	15	23	23	37	1.93
11421189--11421243	24	2.3	24	84	6	67	14	23	25	36	1.93
11421097--11421255	73	2.1	76	78	7	175	16	23	23	36	1.94
11435539--11435581	10	4.3	10	82	8	52	4	16	9	69	1.31
11450614--11450660	15	3.5	13	75	16	51	2	14	8	74	1.15
11456584--11456626	14	3.0	14	80	6	50	37	9	13	39	1.78
11467726--11467752	14	1.9	14	100	0	54	37	11	22	29	1.89
11467724--11467788	34	1.9	33	84	3	85	35	7	13	43	1.73
11467951--11467992	18	2.3	18	83	0	57	64	7	0	28	1.20
11467879--11468092	106	2.0	107	98	0	412	47	5	3	43	1.43
11468058--11468093	18	2.0	18	88	0	54	61	8	0	30	1.26
11471903--11471962	28	2.1	28	84	6	77	28	1	5	65	1.23
11476447--11476490	21	2.1	21	86	0	61	13	18	27	40	1.88
11476550--11476685	43	3.2	43	75	15	122	27	31	17	22	1.97
11476566--11476710	43	3.4	43	78	5	134	26	28	18	25	1.98
11476729--11476846	43	2.7	43	88	2	166	22	31	16	28	1.96
11476654--11476798	75	1.9	75	83	5	186	23	28	18	28	1.98
11481158--11481194	19	1.9	19	88	0	56	13	2	2	81	0.92
11481553--11481590	7	5.4	7	87	0	58	28	50	0	21	1.49
11481545--11481590	21	2.2	21	92	0	74	28	47	0	23	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11481776--11481830	25	2.2	24	84	6	74	58	0	0	41	0.98
11482096--11482296	41	4.9	41	87	1	269	28	32	19	19	1.96
11482102--11482294	81	2.4	82	86	1	271	27	34	19	18	1.95
11482339--11482394	28	2.0	29	89	3	87	26	19	12	41	1.87
11492147--11492222	27	2.9	27	92	5	120	42	18	19	19	1.90
11493590--11493641	23	2.2	24	83	10	63	5	25	0	69	1.10
11494019--11494178	85	1.9	85	88	2	241	29	16	20	33	1.95
11495021--11495054	3	11.3	3	100	0	68	67	0	0	32	0.91
11495437--11495489	23	2.4	22	84	9	72	39	22	20	16	1.92
11495948--11495984	18	2.1	18	90	5	58	32	18	0	48	1.49
11496351--11496375	6	4.2	6	100	0	50	0	16	0	84	0.63
11496485--11496534	19	2.6	20	90	6	77	40	6	4	50	1.46
11496736--11496773	14	2.4	17	87	12	55	52	0	0	47	1.00
11500853--11501075	53	4.2	53	95	0	401	35	18	7	38	1.78
11508351--11508510	85	1.9	85	86	2	232	26	17	21	34	1.95
11509751--11509804	23	2.5	22	87	6	74	38	22	22	16	1.93
11514479--11514546	25	2.6	25	77	11	66	22	25	10	42	1.84
11520350--11520434	32	2.6	33	77	5	93	44	18	10	25	1.82
11520411--11520487	14	5.0	15	71	20	52	42	15	9	32	1.78
11520427--11520466	20	2.0	20	90	0	62	50	12	10	27	1.72
11520415--11520481	34	1.9	35	90	3	109	46	13	8	31	1.74
11520450--11520489	14	2.9	14	84	0	53	42	17	7	32	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11523779--11523827	23	2.1	23	82	14	57	4	24	0	71	1.03
11524847--11524903	29	2.0	29	96	0	105	24	12	26	36	1.91
11530758--11530897	70	2.1	66	81	10	158	33	10	15	40	1.82
11538850--11538952	46	2.4	43	83	15	124	32	20	19	28	1.97
11541590--11541616	12	2.2	12	100	0	54	22	0	7	70	1.12
11541631--11541668	19	2.1	19	90	5	60	39	0	2	57	1.12
11541892--11541917	5	5.2	5	100	0	52	38	19	19	23	1.93
11542128--11542165	19	2.0	19	89	0	58	39	26	5	28	1.78
11550666--11550719	28	2.0	27	92	3	90	22	25	20	31	1.98
11550998--11551069	27	2.7	27	79	14	78	36	15	16	31	1.90
11559942--11559990	19	2.6	20	87	9	68	42	16	0	40	1.48
11562987--11563241	127	2.0	128	98	0	494	44	10	4	40	1.61
11564379--11564508	45	2.9	45	86	4	183	41	17	23	17	1.90
11566305--11566333	15	1.9	15	100	0	58	55	0	13	31	1.39
11568130--11568181	27	1.9	27	96	0	95	36	13	25	25	1.92
11573917--11574001	29	2.9	29	80	0	107	38	4	20	36	1.73
11574191--11574231	20	2.0	20	100	0	82	56	9	19	14	1.66
11577415--11577593	59	3.1	59	85	4	211	51	6	6	35	1.53
11577939--11577980	18	2.3	18	95	0	75	42	2	28	26	1.67
11580485--11580510	12	2.2	12	100	0	52	15	15	7	61	1.55
11581964--11582015	21	2.4	22	84	12	72	40	3	3	51	1.38
11584202--11584239	19	2.0	19	94	0	67	60	0	7	31	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11597388--11597413	5	5.2	5	100	0	52	80	0	0	19	0.71
11598110--11598153	21	2.1	21	95	0	79	40	38	4	15	1.68
11602253--11602337	9	9.4	9	85	5	109	27	8	21	43	1.80
11602500--11602524	12	2.1	12	100	0	50	16	24	36	24	1.94
11610300--11610356	17	3.5	17	69	9	55	14	12	12	61	1.57
11618392--11618428	17	2.2	17	95	0	65	24	2	21	51	1.61
11619576--11619761	46	4.0	46	95	0	318	36	7	25	30	1.84
11624045--11624070	12	2.2	12	100	0	52	65	7	0	26	1.20
11626219--11626352	61	2.2	61	83	6	168	50	4	3	41	1.40
11626311--11626363	20	2.8	19	79	20	67	52	1	1	43	1.23
11634851--11634935	40	2.1	41	84	2	109	29	9	18	42	1.82
11635228--11635271	6	7.2	6	79	5	52	18	18	15	47	1.83
11642362--11642446	40	2.1	40	80	6	91	29	11	17	41	1.85
11642731--11642774	12	3.6	12	81	3	52	18	15	15	50	1.79
11645201--11645238	10	3.8	10	83	10	51	23	7	18	50	1.73
11655636--11655778	63	2.3	63	81	3	173	26	27	22	23	1.99
11660215--11660256	16	2.6	16	96	0	75	23	21	23	30	1.99
11661948--11661979	16	2.0	16	93	0	55	59	0	40	0	0.97
11663541--11663618	37	2.1	37	90	0	120	34	7	8	48	1.63
11674220--11674260	21	2.0	21	90	0	64	43	17	14	24	1.86
11674501--11674624	62	2.0	61	89	4	187	29	8	12	50	1.70
11675399--11675431	15	2.4	14	90	10	50	39	0	6	54	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11675426--11675465	17	2.4	17	87	8	55	32	2	0	65	1.06
11676858--11677011	79	1.9	79	84	2	202	30	9	16	43	1.79
11678206--11678230	13	1.9	13	100	0	50	56	0	0	44	0.99
11678255--11678288	3	11.3	3	93	0	59	0	61	0	38	0.96
11678961--11679107	18	8.4	17	73	21	110	33	4	1	60	1.26
11678946--11679085	37	3.8	35	79	18	135	37	5	1	56	1.30
11678923--11679120	20	10.6	20	70	17	81	34	5	1	59	1.29
11678958--11679087	9	14.0	9	66	18	63	36	4	1	57	1.29
11680929--11681056	51	2.5	51	90	0	202	39	11	26	22	1.89
11682502--11682628	27	4.7	28	79	5	127	38	12	26	22	1.90
11686415--11686463	6	8.0	6	93	2	80	16	30	0	53	1.43
11689143--11689176	17	2.0	17	94	0	59	44	5	2	47	1.42
11691639--11691776	45	3.1	45	92	0	222	44	18	21	15	1.86
11691639--11691806	45	3.7	44	86	1	210	42	17	22	17	1.89
11691862--11691994	66	2.0	66	94	0	230	24	18	26	30	1.98
11692972--11692998	14	1.9	14	100	0	54	22	0	29	48	1.51
11693486--11693543	13	4.5	13	70	20	50	31	0	8	60	1.27
11693479--11693555	38	2.0	38	100	0	154	28	0	10	61	1.29
11698334--11698392	32	1.9	32	83	10	79	62	3	0	33	1.12
11698413--11698472	29	2.0	30	93	3	104	18	23	21	36	1.95
11716839--11716880	4	10.0	4	87	5	57	28	0	2	69	1.01
11717016--11717075	19	3.4	18	76	13	63	53	10	3	33	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11717042--11717079	15	2.7	14	84	11	51	44	10	0	44	1.38
11717042--11717079	14	2.7	15	88	8	53	44	10	0	44	1.38
11717251--11717306	21	2.7	21	91	0	94	25	8	37	28	1.86
11720228--11720986	252	3.0	252	97	0	1419	38	15	21	24	1.92
11723772--11723811	16	2.6	15	76	7	53	65	5	5	25	1.34
11724005--11724042	19	2.0	20	94	5	69	36	10	34	18	1.85
11724091--11724482	98	4.0	98	98	0	757	22	19	30	27	1.98
11729727--11730050	131	2.5	130	81	6	350	39	11	12	36	1.79
11731519--11731571	24	2.2	24	86	0	70	39	3	7	49	1.49
11731536--11731581	24	1.9	24	86	8	67	41	6	4	47	1.49

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136