genome.fa.s10.2.7.7.80.10.50.1000.48.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  48  of  136  ( 16211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15825540--15825635	27	3.6	27	80	14	117	42	21	16	18	1.89
15825540--15825649	27	4.1	26	79	17	100	42	19	18	20	1.89
15825956--15826011	28	2.0	27	89	3	85	21	25	26	26	1.99
15828399--15828469	38	1.9	36	85	5	97	32	1	5	60	1.29
15841280--15841321	18	2.2	20	83	12	61	71	21	0	7	1.09
15843547--15843574	13	2.2	13	100	0	56	46	0	14	39	1.44
15847154--15847256	38	2.7	38	95	0	188	32	10	19	37	1.86
15847365--15847555	43	4.6	41	75	5	175	28	24	15	32	1.95
15853407--15853507	51	2.0	51	82	3	123	41	2	17	37	1.65
15857709--15858242	266	2.0	267	99	0	1061	34	14	12	38	1.84
15859480--15859539	31	1.9	31	93	0	102	53	10	18	18	1.71
15865328--15865372	16	2.8	16	100	0	90	37	15	13	33	1.86
15866215--15866262	25	1.9	25	91	0	78	39	20	12	27	1.89
15866415--15866440	13	2.0	13	100	0	52	53	7	15	23	1.67
15870296--15870349	3	17.0	3	80	14	56	33	1	1	62	1.16
15870293--15870359	22	3.2	20	82	14	66	29	1	2	65	1.16
15870296--15870357	12	5.2	11	80	16	54	30	1	3	64	1.19
15882951--15883085	45	3.0	45	92	0	216	31	16	24	28	1.96
15883121--15883228	45	2.4	45	82	0	126	31	17	24	26	1.97
15882951--15883229	90	3.1	90	72	13	248	29	16	25	28	1.97
15884808--15884861	3	17.0	3	80	14	56	33	1	1	62	1.16
15884805--15884871	22	3.2	20	82	14	66	29	1	2	65	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15884808--15884869	12	5.2	11	80	16	54	30	1	3	64	1.19
15898155--15898585	215	2.0	216	99	0	855	45	7	11	35	1.70
15901494--15901548	6	9.3	6	75	11	51	16	1	5	76	1.06
15908441--15908478	3	12.7	3	100	0	76	34	0	31	34	1.58
15908477--15908541	3	21.7	3	93	0	112	63	1	1	33	1.13
15908421--15908538	9	12.9	9	83	10	78	52	0	13	33	1.46
15911558--15911601	22	2.0	22	95	0	79	40	25	0	34	1.56
15916046--15916103	3	19.3	3	100	0	116	67	0	32	0	0.91
15917718--15917766	20	2.3	21	86	6	64	73	0	0	26	0.83
15918092--15918562	234	2.0	235	99	0	935	42	11	14	31	1.81
15925982--15926052	6	11.7	6	72	13	56	77	4	2	15	1.04
15925982--15926052	20	3.5	20	73	21	67	77	4	2	15	1.04
15927691--15927740	24	2.1	24	81	7	57	62	8	10	20	1.52
15927761--15927786	6	4.3	6	100	0	52	80	0	0	19	0.71
15931358--15931400	20	2.2	19	87	4	59	76	4	0	18	0.95
15933875--15933899	12	2.1	12	100	0	50	52	32	0	16	1.44
15936928--15936962	4	8.8	4	100	0	70	77	0	22	0	0.78
15941364--15941405	18	2.3	18	100	0	84	42	9	0	47	1.36
15942308--15942339	2	16.0	2	100	0	64	0	50	0	50	1.00
15942342--15942393	23	2.2	24	80	16	56	0	9	9	80	0.90
15942450--15942515	13	5.1	13	76	7	62	33	4	24	37	1.76
15943455--15943510	28	2.0	28	100	0	112	21	3	39	35	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15951553--15951605	27	1.9	28	81	11	65	52	13	15	18	1.74
15959589--15959622	17	2.0	17	100	0	68	23	5	41	29	1.78
15963231--15963506	101	2.7	99	78	8	279	25	15	28	30	1.96
15963268--15963503	51	4.7	49	76	9	181	24	17	27	30	1.97
15969790--15969836	18	2.6	18	83	13	60	31	6	21	40	1.78
15969810--15969843	18	1.9	18	88	5	52	32	5	20	41	1.76
15970375--15970434	27	2.2	27	88	5	86	38	21	21	18	1.94
15970587--15970656	26	2.7	26	81	0	95	22	14	21	41	1.89
15977446--15977491	18	2.5	18	83	13	58	30	8	21	39	1.84
15978251--15978309	26	2.3	26	90	0	91	28	16	15	38	1.89
15978513--15978547	17	2.0	17	88	5	52	22	40	22	14	1.90
15979019--15979064	18	2.5	18	83	13	58	30	8	21	39	1.84
15979824--15979882	26	2.3	26	90	0	91	28	16	15	38	1.89
15980086--15980120	17	2.0	17	88	5	52	22	40	22	14	1.90
15982469--15982681	81	2.6	81	86	2	286	21	18	20	40	1.92
15982469--15982689	27	8.2	27	80	6	250	20	18	20	40	1.91
15987337--15987395	20	2.6	23	72	22	54	37	3	15	44	1.63
15995017--15995055	19	2.0	20	90	10	62	43	0	15	41	1.46
15997516--15997544	13	2.1	14	93	6	51	13	0	6	79	0.93
16006528--16006581	16	3.4	16	86	0	72	29	33	0	37	1.58
16012473--16012527	25	2.2	25	83	0	74	30	16	12	40	1.86
16012857--16012901	19	2.5	19	85	7	58	35	20	2	42	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16016924--16017004	40	2.0	40	95	0	144	27	28	14	29	1.95
16023019--16023061	23	1.9	23	90	4	70	67	9	4	18	1.36
16024501--16025246	114	6.6	114	81	3	822	32	16	22	27	1.96
16024572--16025246	228	3.0	228	95	0	1161	33	16	22	27	1.96
16025805--16025831	12	2.2	12	100	0	54	59	0	0	40	0.98
16027330--16027433	45	2.3	45	80	11	115	31	7	17	43	1.77
16028455--16028539	25	3.3	24	69	15	71	40	15	3	41	1.64
16029696--16029782	9	9.8	9	71	16	65	44	18	3	33	1.66
16029689--16029789	16	5.9	16	69	17	69	46	17	2	32	1.64
16036711--16036763	21	2.5	21	81	0	61	39	18	35	5	1.75
16037253--16037296	22	2.0	22	86	0	61	47	27	15	9	1.76
16041115--16041153	19	2.1	19	90	0	60	7	12	17	61	1.54
16042539--16042573	9	3.9	9	88	0	52	45	0	2	51	1.16
16042536--16042581	13	3.5	13	84	3	56	45	0	4	50	1.21
16045293--16045392	28	3.6	28	75	10	105	28	23	16	33	1.95
16047879--16047963	37	2.3	37	95	0	152	56	7	29	7	1.52
16050769--16050810	20	2.2	19	87	12	59	16	16	2	64	1.40
16069856--16069887	15	2.1	15	94	0	55	50	3	18	28	1.62
16070094--16070127	17	1.9	18	88	5	52	26	11	11	50	1.73
16071467--16071519	23	2.4	22	90	3	79	30	13	26	30	1.94
16078977--16079295	44	7.2	44	64	11	132	31	20	23	24	1.98
16078976--16079745	132	5.8	132	94	0	1288	30	20	24	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16078976--16079745	266	2.9	264	92	0	1297	30	20	24	24	1.99
16081158--16081206	20	2.4	21	86	3	64	32	8	4	55	1.48
16081238--16081297	26	2.3	27	81	16	74	33	6	6	53	1.53
16084033--16084128	47	2.0	47	95	0	174	31	17	13	37	1.89
16089383--16089412	15	2.0	15	93	0	51	16	6	16	60	1.56
16095660--16095712	12	4.4	12	78	4	54	0	18	3	77	0.92
16101612--16101955	102	3.4	101	81	4	374	29	15	24	30	1.96
16101612--16101945	51	6.6	50	76	7	280	29	15	24	30	1.95
16104035--16104093	30	1.9	31	86	3	84	44	8	18	28	1.79
16104562--16104905	102	3.4	100	85	5	415	29	16	25	28	1.97
16104562--16104899	51	6.7	50	78	7	297	29	16	25	28	1.97
16107396--16107649	29	8.6	30	71	8	108	23	25	14	37	1.92
16107440--16107502	30	2.1	30	85	5	83	30	25	15	28	1.96
16107482--16107560	29	2.7	29	88	2	113	18	26	12	41	1.87
16107417--16107640	58	3.8	59	70	7	168	24	25	13	36	1.92
16108991--16109024	3	11.3	3	93	0	59	38	0	29	32	1.58
16115810--16115849	17	2.3	17	82	4	53	55	5	35	5	1.44
16117772--16117873	30	3.4	30	100	0	204	30	21	15	32	1.95
16123727--16123820	45	2.1	45	91	0	152	31	24	18	25	1.97
16123826--16124004	51	3.5	51	82	3	200	29	26	15	28	1.96
16126780--16126861	42	2.0	42	82	4	103	30	24	15	29	1.96
16128835--16128871	18	2.1	18	100	0	74	27	0	27	45	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16132268--16132329	30	2.1	30	100	0	124	11	22	19	46	1.81
16136533--16136856	110	3.0	110	86	1	449	34	16	16	32	1.91
16140391--16140423	17	1.9	17	93	0	57	48	0	12	39	1.40
16140941--16140975	15	2.3	15	90	9	54	42	0	11	45	1.40
16140949--16140985	19	1.9	19	100	0	74	43	0	8	48	1.32
16143772--16143955	51	3.7	49	77	10	165	32	26	15	25	1.96
16145177--16145302	19	6.6	19	73	3	101	15	19	30	34	1.94
16145162--16145302	57	2.5	57	80	5	160	15	21	29	33	1.94
16146934--16146973	20	2.0	20	100	0	80	40	20	30	10	1.85
16152627--16152689	25	2.6	24	75	5	63	20	28	17	33	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136