genome.fa.s10.2.7.7.80.10.50.1000.61.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  61  of  136  ( 16211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20182910--20182966	8	7.2	8	78	9	64	75	0	21	3	0.95
20188372--20188413	22	2.0	21	90	4	66	30	4	33	30	1.78
20192271--20192382	23	4.9	23	79	0	134	37	26	5	30	1.79
20192271--20192382	46	2.4	46	87	0	161	37	26	5	30	1.79
20200756--20200802	20	2.3	20	85	7	60	25	17	29	27	1.97
20208538--20208605	28	2.4	29	85	9	88	51	11	10	26	1.70
20210462--20210555	18	5.6	18	74	23	87	9	29	4	56	1.50
20210462--20210555	33	2.8	33	90	1	134	9	29	4	56	1.50
20210602--20210641	17	2.3	18	87	8	57	7	17	0	75	1.03
20225124--20225356	116	2.0	117	98	0	450	28	17	23	30	1.97
20229351--20229392	12	3.6	12	80	6	59	16	4	2	76	1.07
20229350--20229392	11	3.5	13	75	18	56	16	4	2	76	1.05
20229342--20229392	23	2.3	23	93	3	86	13	5	1	78	1.02
20230595--20230639	20	2.3	19	84	7	54	33	11	31	24	1.90
20232712--20232756	20	2.3	19	84	7	54	33	11	31	24	1.90
20235899--20235980	37	2.2	37	88	0	119	59	1	3	35	1.23
20235899--20235980	18	4.4	19	70	4	60	59	1	3	35	1.23
20239311--20239372	31	2.0	31	100	0	124	32	9	16	41	1.80
20248515--20249398	437	2.0	437	95	0	1581	31	24	16	27	1.97
20258031--20258077	22	2.1	22	92	0	76	42	10	6	40	1.65
20261887--20261915	3	9.7	3	100	0	58	68	0	0	31	0.89
20262188--20262218	9	3.4	9	90	0	53	25	12	22	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20262353--20262415	33	1.9	32	93	3	108	19	55	0	25	1.43
20264253--20264291	20	2.0	20	84	0	51	2	20	7	69	1.26
20273350--20273387	19	2.0	19	94	0	67	36	10	7	44	1.68
20276320--20276381	21	3.0	21	85	0	79	38	16	25	19	1.92
20283296--20283340	21	2.1	22	84	12	58	66	8	11	13	1.44
20286132--20286309	34	5.2	34	84	2	221	40	17	23	19	1.91
20286145--20286310	35	4.8	34	85	2	215	39	18	23	19	1.92
20286145--20286309	69	2.4	69	93	0	285	38	18	23	19	1.93
20286516--20286571	18	3.3	18	76	19	75	35	12	7	44	1.70
20286517--20286581	32	2.0	32	100	0	130	38	12	6	43	1.67
20286524--20286577	17	3.3	17	75	19	69	42	12	5	38	1.67
20286664--20286697	17	2.0	17	94	0	59	41	14	5	38	1.70
20290846--20290879	14	2.5	14	95	4	61	41	5	14	38	1.70
20290898--20290962	32	2.0	32	100	0	130	43	6	12	38	1.67
20290897--20290948	15	3.3	15	75	19	61	44	5	9	40	1.61
20290908--20290963	18	3.3	18	76	19	75	44	7	12	35	1.70
20291533--20291735	35	5.9	35	86	1	266	40	16	22	20	1.91
20291533--20291735	69	2.9	69	85	2	282	40	16	22	20	1.91
20291523--20291735	104	2.0	104	89	0	327	41	15	21	20	1.90
20291942--20292004	32	2.0	33	93	6	112	36	12	4	46	1.63
20292022--20292056	14	2.6	14	95	4	63	37	14	5	42	1.69
20296598--20296627	13	2.3	13	94	0	51	33	13	3	50	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20299117--20299205	31	3.0	30	78	4	90	32	13	14	39	1.85
20300647--20300941	43	6.9	43	85	2	351	29	31	15	23	1.95
20300647--20300942	86	3.4	86	87	0	412	29	31	15	23	1.95
20301314--20301358	21	2.1	21	91	0	72	2	44	15	37	1.59
20312576--20312623	9	4.9	9	76	18	51	35	0	16	47	1.47
20313269--20313340	29	2.5	30	76	19	80	50	1	2	45	1.25
20318811--20319038	110	2.0	111	85	5	300	45	14	13	26	1.82
20324444--20324767	161	2.0	163	98	1	634	41	8	7	42	1.63
20336160--20336188	15	1.9	15	100	0	58	20	0	24	55	1.44
20336340--20336373	17	1.9	18	88	5	52	38	5	0	55	1.24
20347430--20347472	21	2.2	18	84	12	50	32	2	0	65	1.06
20350963--20350990	13	2.2	13	100	0	56	78	0	7	14	0.95
20350973--20351014	17	2.5	17	88	11	61	78	4	2	14	1.01
20357143--20357241	28	3.5	28	84	4	110	31	11	28	29	1.91
20359108--20359183	36	2.0	39	87	7	113	60	0	1	38	1.05
20365864--20365937	3	24.7	3	91	0	94	59	0	6	33	1.24
20377319--20377377	24	2.5	24	81	8	68	38	16	18	25	1.92
20377783--20378009	89	2.6	89	90	1	348	28	25	23	22	1.99
20377751--20378003	89	2.9	89	88	1	321	27	26	24	22	1.99
20378329--20378574	44	5.6	44	74	9	162	30	19	22	28	1.98
20378650--20378801	44	3.5	44	79	8	141	27	17	23	30	1.97
20378200--20378803	312	1.9	312	89	2	937	30	18	21	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20379087--20379249	44	3.7	45	79	3	170	27	20	25	26	1.99
20378892--20379389	228	2.2	225	84	2	624	29	19	22	28	1.98
20380859--20380902	2	22.0	2	100	0	88	50	0	0	50	1.00
20389694--20389726	16	2.1	16	88	11	50	45	3	3	48	1.33
20390329--20391463	563	2.0	564	99	0	2263	35	19	16	27	1.94
20400465--20400513	25	2.0	25	84	8	64	32	2	18	46	1.60
20401615--20401714	42	2.4	42	93	0	164	38	15	27	20	1.92
20406056--20406089	3	11.7	3	93	6	61	32	0	0	67	0.91
20415265--20415316	21	2.5	21	76	17	54	34	3	1	59	1.27
20421525--20421998	62	7.4	64	78	8	419	48	10	14	25	1.76
20421585--20422036	134	3.4	131	78	8	404	49	10	14	25	1.75
20421770--20422036	72	3.9	70	76	14	216	48	9	14	27	1.75
20423627--20423914	91	3.2	91	80	1	344	32	26	15	25	1.95
20445680--20445728	18	2.7	19	78	9	57	42	14	0	42	1.45
20452835--20452876	21	2.0	22	90	4	68	38	26	4	30	1.77
20454995--20455102	42	2.5	42	90	1	171	29	26	14	28	1.95
20484404--20484582	89	2.0	89	98	0	349	41	17	22	18	1.90
20486092--20486139	17	2.8	18	78	15	57	27	4	10	58	1.49
20486920--20486961	20	2.1	20	86	0	57	47	0	7	45	1.30
20493884--20495085	609	2.0	609	96	0	2219	34	20	14	30	1.93
20499486--20499602	62	1.9	59	87	5	171	50	4	2	42	1.35
20499581--20499687	20	5.8	18	70	22	62	52	2	2	42	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20508604--20508664	24	2.5	25	84	12	74	34	0	0	65	0.93
20508617--20508670	25	2.2	25	83	12	67	35	1	0	62	1.06
20508616--20508672	26	2.3	23	80	17	60	35	1	0	63	1.05
20514957--20515016	26	2.3	26	85	0	84	31	21	8	38	1.83
20518553--20518620	32	2.1	32	86	5	91	58	8	14	17	1.61
20518564--20518638	32	2.4	32	84	2	89	50	8	18	22	1.73
20523236--20523262	2	13.5	2	100	0	54	48	0	0	51	1.00
20532705--20532738	14	2.4	14	95	0	59	35	17	8	38	1.81
20533637--20533698	19	3.0	21	76	19	60	53	1	1	43	1.20
20533637--20533710	22	3.5	21	71	15	64	54	1	2	41	1.23
20538329--20538363	17	2.0	18	88	5	54	11	5	14	68	1.37
20542414--20542569	74	2.1	74	80	2	170	38	12	14	34	1.84
20542490--20542672	74	2.5	70	73	15	165	40	8	13	37	1.75
20545048--20546951	951	2.0	940	85	2	2575	24	16	22	36	1.94
20549730--20549779	20	2.5	20	86	0	64	24	26	2	48	1.62
20553105--20553139	18	1.9	18	88	0	52	0	8	14	77	0.99
20559848--20559897	20	2.5	20	86	0	64	24	26	2	48	1.62
20563223--20563257	18	1.9	18	88	0	52	0	8	14	77	0.99
20571156--20571779	311	2.0	311	99	0	1239	31	19	16	32	1.94
20587707--20587764	19	3.0	20	73	14	59	37	1	6	53	1.38
20587781--20587818	20	1.9	20	84	10	51	26	5	7	60	1.46
20587985--20588028	22	2.0	22	95	0	79	25	18	4	52	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20593986--20594025	19	2.1	19	100	0	80	62	15	5	17	1.49
20596333--20596443	43	2.6	43	82	7	134	30	14	23	31	1.94
20599405--20599446	22	1.9	22	85	9	59	66	7	0	26	1.17
20604991--20605031	13	3.1	14	79	10	50	51	17	14	17	1.77
20609810--20609860	20	2.5	20	93	0	93	56	3	7	31	1.46
20610218--20610269	21	2.4	22	77	6	61	46	0	1	51	1.12
20610666--20612115	724	2.0	724	100	0	2900	31	19	14	35	1.91
20612533--20612570	19	2.0	19	94	0	67	31	23	5	39	1.77
20624225--20624328	49	2.1	49	92	0	172	31	7	10	50	1.65
20625712--20626048	121	2.8	121	98	0	649	43	0	5	50	1.30

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136