genome.fa.s10.2.7.7.80.10.50.1000.107.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  107  of  136  ( 16211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36231350--36231781	102	4.2	101	80	8	489	27	1	13	57	1.45
36231760--36231795	16	2.2	16	90	5	54	30	0	8	61	1.26
36238093--36238141	26	2.0	26	88	8	75	61	10	0	28	1.29
36238254--36238291	4	9.2	4	83	16	51	0	26	0	73	0.83
36241438--36241465	6	4.7	6	100	0	56	67	17	0	14	1.22
36241514--36241547	6	5.7	6	92	0	59	82	0	17	0	0.67
36243341--36243734	124	3.2	124	90	0	610	30	14	21	33	1.93
36245429--36245549	30	4.3	29	78	18	139	28	1	27	42	1.65
36245466--36245566	23	4.1	23	81	16	121	30	0	24	43	1.61
36245442--36245566	53	2.4	52	90	4	189	30	0	24	44	1.59
36245572--36245756	71	2.6	71	92	0	307	44	14	3	37	1.63
36245644--36245754	25	4.6	25	69	20	83	45	14	2	37	1.59
36245868--36245920	24	2.2	24	89	0	79	1	24	32	41	1.66
36246152--36246186	18	1.9	18	88	0	52	31	8	34	25	1.86
36247667--36247753	40	2.2	40	93	0	147	43	0	25	31	1.55
36247736--36247761	12	2.2	12	100	0	52	42	0	34	23	1.54
36248651--36248682	13	2.5	13	94	0	55	50	0	12	37	1.41
36268278--36268329	27	1.9	27	84	0	68	19	19	21	40	1.92
36271457--36271573	46	2.6	46	93	2	193	29	23	14	32	1.94
36272385--36272443	28	2.1	28	96	0	109	35	6	5	52	1.50
36272392--36272451	28	2.3	27	85	8	79	31	10	6	51	1.61
36277662--36277705	20	2.2	20	95	0	79	40	9	13	36	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36277669--36277712	20	2.2	20	91	0	70	40	9	18	31	1.81
36284659--36284688	15	1.9	16	93	6	53	26	3	0	70	1.03
36293343--36293384	17	2.5	17	92	0	75	42	0	21	35	1.53
36293528--36293576	24	2.0	24	96	0	89	53	4	14	28	1.59
36294577--36294625	21	2.3	21	92	0	89	34	22	18	24	1.96
36295341--36295383	18	2.4	18	100	0	86	44	13	20	20	1.86
36296364--36296655	145	2.0	145	92	1	487	36	15	14	33	1.88
36297416--36297468	17	3.4	17	75	20	69	13	11	20	54	1.69
36297415--36297473	30	2.0	30	96	0	109	13	11	20	54	1.70
36300609--36300660	18	2.7	19	85	5	61	36	3	11	48	1.58
36300783--36300880	3	32.7	3	87	4	144	63	2	2	32	1.17
36303188--36303280	32	2.9	32	93	0	168	27	4	16	51	1.63
36304642--36304690	19	2.5	19	76	3	62	55	12	6	26	1.60
36308674--36308720	22	2.1	22	96	0	85	21	8	19	51	1.73
36311760--36311905	72	2.0	72	92	2	240	37	13	14	34	1.85
36320192--36320288	48	2.0	48	95	0	176	28	30	6	34	1.82
36327307--36327347	20	2.2	19	86	8	57	73	7	4	14	1.22
36327554--36327628	23	3.1	24	78	5	80	65	21	4	9	1.38
36327637--36327683	24	2.0	23	83	4	58	53	21	0	25	1.46
36332872--36332941	29	2.4	29	82	0	95	58	20	10	11	1.61
36336907--36336998	29	3.1	29	81	4	105	22	43	18	15	1.87
36345014--36345068	25	2.2	25	86	0	74	49	21	12	16	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36345052--36345137	20	4.2	20	76	12	75	46	24	13	15	1.82
36348876--36349056	88	2.1	88	100	0	362	40	14	14	30	1.85
36355509--36355549	17	2.4	17	77	22	50	14	7	0	78	0.96
36356313--36356347	18	1.9	18	100	0	70	40	14	11	34	1.82
36360218--36360389	91	1.9	89	85	5	231	40	15	8	35	1.78
36360551--36360597	10	4.7	10	76	10	51	63	0	2	34	1.06
36360570--36360643	29	2.5	29	72	12	78	64	2	2	29	1.21
36360531--36360606	20	3.8	20	72	14	68	64	2	3	28	1.25
36360583--36360683	29	3.4	29	75	14	100	61	1	4	31	1.28
36360692--36360744	10	5.2	11	71	17	51	71	1	5	20	1.16
36360687--36360745	10	6.0	10	75	9	50	67	1	8	22	1.26
36360686--36360744	19	2.9	20	80	10	66	67	3	8	20	1.31
36360946--36360984	20	2.0	20	84	0	51	35	10	0	53	1.35
36362438--36362888	96	4.7	96	96	0	735	28	17	25	28	1.98
36369424--36369455	11	2.8	12	86	13	50	65	0	0	34	0.93
36370999--36371068	28	2.5	27	84	6	95	32	1	0	65	1.01
36376704--36376802	42	2.3	42	84	1	117	32	25	18	24	1.97
36376688--36376841	43	3.6	43	78	4	134	30	27	18	23	1.97
36379033--36379072	2	20.0	2	100	0	80	50	0	0	50	1.00
36388275--36388367	44	2.1	44	97	0	177	36	16	20	26	1.93
36390481--36390562	40	2.0	41	97	2	157	26	19	2	51	1.59
36390492--36390557	23	3.1	23	63	24	63	25	22	1	50	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36404873--36405001	63	2.0	64	98	1	251	29	9	15	45	1.77
36410403--36410556	70	2.2	71	85	2	204	29	20	20	29	1.97
36410589--36410643	22	2.5	22	69	0	56	23	16	21	38	1.93
36413262--36413286	13	1.9	13	100	0	50	32	4	24	40	1.73
36414402--36414518	43	2.7	44	79	13	118	23	16	29	29	1.96
36429292--36429363	26	2.8	25	89	4	99	40	15	23	20	1.91
36437250--36437391	43	3.3	43	80	3	144	32	25	14	28	1.94
36437272--36437405	43	3.1	43	75	6	130	30	23	14	31	1.94
36442213--36442703	9	53.9	9	68	17	180	33	1	18	46	1.56
36442213--36442417	53	3.8	52	78	15	200	35	1	17	45	1.58
36442283--36442401	61	2.0	60	90	5	186	32	1	20	45	1.61
36442211--36442417	51	3.8	52	77	17	215	35	1	17	45	1.57
36442213--36442417	114	1.8	112	85	8	290	35	1	17	45	1.58
36442301--36442591	30	10.2	29	68	19	125	33	0	19	46	1.55
36442485--36442551	21	3.4	20	70	16	59	38	0	17	43	1.50
36442487--36442561	38	2.0	38	94	0	132	37	0	18	44	1.50
36443612--36443725	29	4.1	29	75	12	103	52	7	2	36	1.45
36443654--36443701	25	2.0	24	91	4	78	50	12	0	37	1.41
36445714--36445773	30	2.0	30	100	0	120	30	6	10	53	1.60
36446157--36446368	7	29.7	7	71	12	83	43	33	0	22	1.60
36446231--36446278	15	3.3	15	79	5	53	43	35	0	20	1.52
36446209--36446368	21	7.5	21	72	10	119	46	30	0	21	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36446367--36446436	23	3.2	23	69	22	78	48	11	2	37	1.54
36446357--36446441	42	2.0	43	97	2	163	50	11	2	35	1.52
36446367--36446431	19	3.2	19	65	23	51	49	10	3	36	1.53
36448744--36448964	43	5.1	43	86	2	293	29	32	17	20	1.96
36449553--36449583	7	4.4	7	91	0	53	32	48	0	19	1.49
36449519--36449583	21	3.0	21	77	2	67	35	41	0	23	1.55
36449554--36449607	21	2.6	21	84	0	63	35	46	0	18	1.50
36449602--36449640	14	2.7	15	80	11	55	38	30	0	30	1.58
36449946--36450127	7	25.6	7	70	13	59	44	32	0	21	1.57
36449990--36450127	21	6.4	21	73	7	89	47	28	0	22	1.56
36449990--36450037	15	3.3	15	76	5	53	45	33	0	20	1.52
36449996--36450127	14	9.3	14	73	12	90	48	28	0	22	1.56
36450054--36450127	7	10.6	7	84	5	60	50	28	0	21	1.49
36450428--36450729	114	2.7	109	87	5	421	26	23	20	29	1.99
36450658--36450767	40	2.8	40	78	2	114	23	26	20	29	1.99
36450829--36450934	52	2.0	52	100	0	212	35	7	13	43	1.72
36450915--36450948	10	3.4	10	87	0	50	44	14	0	41	1.45
36461898--36461935	19	2.0	19	85	10	51	42	2	5	50	1.39
36467339--36467426	43	2.0	43	100	0	176	28	14	25	31	1.95
36472499--36472539	14	2.8	15	82	10	50	24	2	4	68	1.22
36472629--36472717	35	2.5	35	80	8	110	22	23	14	39	1.91
36472629--36472727	35	2.9	34	78	4	108	22	23	15	39	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36474762--36474802	6	6.8	6	100	0	82	34	0	48	17	1.47
36475145--36475192	23	2.0	25	84	15	66	16	6	2	75	1.11
36477172--36477209	9	4.3	9	90	3	60	44	0	10	44	1.38
36477329--36477383	28	2.0	27	89	3	83	40	3	3	52	1.36
36477331--36477396	28	2.4	28	84	5	80	37	6	4	51	1.47
36481977--36482003	5	5.4	5	100	0	54	59	0	0	40	0.98
36483256--36483333	34	2.3	34	88	0	111	15	11	28	44	1.81
36508009--36508077	26	2.7	26	86	0	102	26	14	17	42	1.87
36512305--36512366	27	2.3	27	100	0	124	17	30	20	30	1.96
36516592--36516693	3	34.0	3	87	3	134	29	2	1	65	1.18

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136