genome.fa.s10.2.7.7.80.10.50.1000.57.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  57  of  136  ( 16211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18821909--18824273	792	3.0	788	85	2	3017	33	19	15	31	1.93
18821960--18824273	779	3.0	780	84	3	2946	33	19	15	31	1.93
18840479--18840762	141	2.0	142	99	0	561	43	4	14	37	1.65
18840701--18840782	9	9.0	9	72	18	55	57	0	0	42	0.98
18840717--18840781	17	3.7	18	78	15	73	60	0	0	40	0.97
18846120--18846201	9	9.0	9	72	18	55	57	0	0	42	0.98
18846136--18846200	17	3.7	18	78	15	73	60	0	0	40	0.97
18853840--18853880	19	2.1	20	90	4	66	39	7	2	51	1.43
18857738--18857790	26	2.0	27	85	3	72	26	24	7	41	1.81
18859777--18859923	50	2.9	48	79	10	141	25	20	31	22	1.98
18860213--18860251	20	2.0	20	90	10	62	56	5	23	15	1.59
18865706--18865954	50	4.9	51	77	9	190	27	19	28	24	1.99
18866157--18866205	20	2.5	20	81	15	66	57	6	24	12	1.58
18872661--18872754	40	2.3	40	83	3	127	28	18	14	38	1.90
18872701--18872839	59	2.3	60	82	7	167	25	18	19	36	1.94
18872703--18872828	20	6.3	20	67	5	76	26	17	19	36	1.94
18876771--18876830	23	2.6	23	75	0	66	18	16	23	41	1.90
18881706--18881744	14	2.8	14	84	0	51	35	12	23	28	1.91
18886808--18886926	49	2.4	49	90	0	175	21	20	21	37	1.94
18887123--18887155	13	2.8	12	86	13	50	39	12	6	42	1.67
18887888--18888231	102	3.4	101	85	3	426	29	15	26	28	1.96
18887888--18888225	51	6.7	50	79	6	351	28	15	26	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18900520--18900693	91	1.9	91	85	4	244	32	11	17	38	1.85
18901291--18901356	26	2.5	26	85	4	80	28	25	18	27	1.98
18903225--18903261	19	1.9	19	94	0	65	64	13	5	16	1.45
18906257--18906310	23	2.3	23	96	0	99	46	14	0	38	1.45
18911017--18911084	34	2.0	34	100	0	136	20	20	23	35	1.96
18915735--18915845	26	4.2	26	62	19	68	36	5	6	52	1.50
18915730--18915853	37	3.2	37	65	22	101	37	4	5	51	1.47
18915718--18915887	79	2.1	79	96	1	313	38	4	7	50	1.51
18917458--18917504	3	15.7	3	100	0	94	34	0	0	65	0.93
18919798--18919858	29	2.1	30	82	14	74	45	3	1	49	1.28
18920282--18920318	19	1.9	19	88	0	56	37	2	0	59	1.12
18923600--18923737	47	2.8	49	84	5	172	25	15	24	34	1.95
18923804--18923838	17	2.0	18	88	5	54	37	11	14	37	1.82
18934647--18934869	111	2.0	112	97	0	421	25	15	21	37	1.93
18942726--18942801	35	2.1	35	88	7	109	72	7	9	10	1.29
18942739--18942827	47	1.9	45	86	4	124	70	6	11	11	1.32
18942798--18942845	19	2.5	19	83	9	62	77	0	18	4	0.93
18942798--18942845	6	7.7	6	88	9	60	77	0	18	4	0.93
18945191--18945567	44	8.1	44	69	17	217	31	18	22	28	1.97
18945191--18945616	142	3.0	142	95	1	759	32	17	21	27	1.96
18945376--18945557	98	1.9	97	80	6	215	31	18	20	29	1.96
18947543--18947606	24	2.4	28	77	20	73	42	3	4	50	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18955882--18955982	42	2.4	42	85	3	123	22	24	33	18	1.97
18957851--18957886	18	2.0	18	94	0	63	30	11	5	52	1.59
18964017--18964051	9	3.9	9	92	0	61	42	14	11	31	1.81
18964265--18964324	30	2.0	31	86	3	86	20	40	0	40	1.52
18966004--18966130	45	2.8	44	78	3	146	25	22	11	40	1.87
18970048--18970088	21	1.9	22	90	5	66	36	19	24	19	1.95
18970528--18970561	10	3.4	10	91	0	50	20	5	5	67	1.33
18983297--18983361	32	2.1	32	88	5	98	58	13	4	23	1.54
18990089--18990297	103	2.0	103	94	1	366	29	19	16	34	1.94
18991709--18991755	15	3.1	15	74	17	51	23	14	10	51	1.74
18992160--18992208	23	2.1	23	85	7	64	77	2	10	10	1.07
18992151--18992202	15	3.4	14	80	15	50	80	1	11	5	0.96
18994314--18994361	24	2.0	24	87	0	69	52	12	4	31	1.58
18995643--18995670	2	14.0	2	100	0	56	50	0	0	50	1.00
18995678--18995730	21	2.7	20	77	8	54	28	9	15	47	1.76
19007814--19007844	2	15.5	2	100	0	62	51	0	0	48	1.00
19009046--19009147	42	2.4	41	84	11	125	59	4	27	7	1.46
19021890--19021931	22	2.1	19	86	13	57	45	0	0	54	0.99
19021890--19021928	16	2.5	15	83	8	51	46	0	0	53	1.00
19023552--19023577	3	8.7	3	100	0	52	65	0	34	0	0.93
19033781--19033806	3	8.7	3	100	0	52	65	0	34	0	0.93
19039247--19039279	2	17.0	2	87	6	50	48	3	0	48	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19041248--19041285	14	2.7	14	88	8	51	31	21	23	23	1.98
19042871--19043190	27	11.9	27	82	2	376	43	21	19	15	1.88
19042873--19043190	81	3.9	80	85	2	431	43	21	18	16	1.88
19043374--19043442	26	2.7	26	81	0	75	20	17	21	40	1.91
19043589--19043642	28	1.9	28	92	0	90	22	27	24	25	2.00
19048103--19048140	20	1.9	20	84	10	51	52	15	2	28	1.56
19050179--19050238	25	2.3	26	85	2	77	35	10	23	31	1.88
19056321--19056397	29	2.6	29	83	4	91	46	14	14	24	1.81
19063835--19063912	31	2.5	31	89	0	111	32	10	15	42	1.80
19065425--19065553	66	2.0	67	84	6	174	50	10	12	26	1.73
19079615--19079773	76	2.1	77	97	1	302	32	11	17	38	1.85
19084039--19084145	20	5.3	20	70	4	81	30	18	33	16	1.94
19084010--19084278	40	6.7	40	81	0	259	33	15	29	20	1.94
19084010--19084278	80	3.4	80	81	1	288	33	15	29	20	1.94
19084069--19084237	20	8.4	20	66	7	83	32	15	30	21	1.94
19084631--19084713	39	2.1	39	97	0	157	26	30	9	33	1.88
19088687--19088713	2	13.5	2	100	0	54	51	0	0	48	1.00
19095468--19095728	129	2.0	130	99	0	515	42	10	4	41	1.60
19107529--19107584	21	2.7	20	80	2	67	51	7	30	10	1.63
19109368--19109457	37	2.4	37	83	3	119	35	15	13	35	1.87
19111328--19111472	50	2.9	50	84	0	182	26	22	29	21	1.99
19113340--19113570	34	6.8	34	86	1	284	45	21	10	22	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19118250--19118307	23	2.5	23	73	18	57	37	3	25	32	1.73
19120474--19120527	26	2.0	27	82	3	65	51	12	9	25	1.70
19121256--19121302	23	2.0	23	95	0	85	29	8	14	46	1.74
19128941--19128987	20	2.3	20	96	0	85	34	10	6	48	1.63
19129147--19129238	43	2.1	43	91	0	148	43	10	14	31	1.79
19130342--19130370	12	2.3	13	94	5	51	24	10	13	51	1.72
19131253--19131286	15	2.3	15	89	0	50	52	0	2	44	1.16
19131453--19131492	14	2.9	14	84	0	53	32	7	17	42	1.77
19131476--19131515	20	2.0	20	90	0	62	27	10	12	50	1.72
19131461--19131527	34	1.9	35	90	3	109	31	8	13	46	1.74
19131455--19131531	14	5.0	15	71	20	52	32	9	15	42	1.78
19142284--19142309	5	5.2	5	100	0	52	42	19	19	19	1.90
19143093--19143129	9	4.1	9	92	0	65	29	10	13	45	1.77
19143183--19143213	9	3.4	9	90	0	53	38	22	12	25	1.90
19144190--19144354	82	2.0	82	95	2	296	49	6	16	28	1.69
19147672--19147705	18	1.9	17	88	5	50	29	5	23	41	1.78
19154281--19154402	25	4.8	25	68	15	70	36	18	24	20	1.94
19154419--19154513	24	3.9	25	73	4	77	37	20	26	15	1.92
19163154--19163389	116	2.0	116	98	0	454	39	10	15	34	1.81
19165132--19165191	31	1.9	31	93	0	102	58	3	20	18	1.53
19165318--19165392	32	2.4	31	86	4	105	41	4	6	48	1.48
19165319--19165372	18	3.3	17	69	26	53	38	1	7	51	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19169229--19169371	47	3.0	47	80	4	144	30	16	30	22	1.96
19170596--19170656	26	2.3	26	82	2	77	34	9	8	47	1.66
19172475--19172557	25	3.3	25	81	9	89	22	21	21	33	1.97
19172475--19172588	50	2.3	51	78	6	117	24	20	22	32	1.98
19172740--19172801	31	2.1	30	82	17	76	45	8	17	29	1.77
19173834--19174059	112	2.0	113	96	3	420	32	12	12	42	1.80
19178581--19178641	26	2.3	26	82	2	77	34	9	8	47	1.66
19180460--19180542	25	3.3	25	81	9	89	22	21	21	33	1.97
19180460--19180573	50	2.3	51	78	6	117	24	20	22	32	1.98
19180725--19180786	31	2.1	30	82	17	76	45	8	17	29	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136