genome.fa.s10.2.7.7.80.10.50.1000.22.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  22  of  136  ( 16211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6906358--6906546	101	1.9	101	80	8	224	27	6	5	60	1.44
6908135--6908165	14	2.2	14	94	0	53	48	12	0	38	1.42
6913119--6913547	214	2.0	215	99	0	851	37	19	9	34	1.84
6919472--6919643	43	4.0	43	100	0	344	23	18	23	34	1.96
6925978--6926090	39	2.9	39	84	2	131	62	3	5	28	1.33
6926025--6926097	21	3.8	20	73	23	75	67	2	5	24	1.26
6926028--6926097	22	3.6	21	73	23	64	67	2	5	24	1.26
6926045--6926078	16	2.1	17	88	5	52	76	0	2	20	0.92
6926025--6926097	20	3.7	21	72	22	77	67	2	5	24	1.26
6932586--6932629	16	2.7	16	83	16	63	56	0	0	43	0.99
6935483--6935517	17	2.1	17	89	10	54	57	8	0	34	1.29
6935651--6935684	15	2.4	14	86	13	52	50	0	17	32	1.47
6937358--6937758	44	8.9	44	77	9	335	29	19	17	33	1.95
6937351--6937758	133	3.0	132	76	7	338	28	19	17	33	1.95
6937325--6937758	177	2.4	180	81	5	491	28	19	17	33	1.95
6937712--6938040	51	6.6	51	74	10	293	26	19	18	35	1.95
6937685--6938004	147	2.2	146	80	7	355	27	19	19	33	1.96
6938012--6938061	21	2.4	21	89	0	73	22	22	12	44	1.85
6938033--6938224	102	1.9	102	89	2	296	31	19	15	33	1.93
6938134--6938268	44	3.1	43	75	6	137	27	20	18	34	1.96
6944414--6944467	28	1.9	28	84	0	72	22	11	18	48	1.79
6949792--6949826	17	2.1	17	89	10	54	57	8	0	34	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6950007--6950051	3	15.3	3	82	13	58	68	2	0	28	1.01
6955196--6955231	18	2.0	18	94	0	63	33	19	5	41	1.75
6957279--6957303	3	8.3	3	100	0	50	0	68	0	32	0.90
6960947--6960980	12	2.8	12	86	0	50	76	2	0	20	0.92
6965192--6965232	19	2.1	20	86	13	59	70	9	0	19	1.14
6965191--6965266	31	2.6	29	78	16	75	64	11	2	21	1.38
6967329--6967473	71	2.0	71	82	0	173	28	13	9	47	1.75
6977147--6977203	3	20.0	3	75	13	50	31	3	0	64	1.10
6981782--6981828	24	2.0	24	87	8	69	31	10	0	57	1.33
6981782--6981819	12	3.2	12	82	10	51	34	10	0	55	1.34
6986485--6986556	35	2.1	34	87	5	101	37	1	0	61	1.05
6986523--6986573	22	2.3	22	86	0	75	43	1	0	54	1.11
6994944--6994981	19	2.0	19	94	0	67	63	7	0	28	1.23
7002663--7002712	25	2.0	25	92	0	82	22	14	18	46	1.84
7006744--7006785	4	10.5	4	100	0	84	23	0	26	50	1.50
7007324--7007498	30	5.9	29	75	8	140	32	23	4	40	1.73
7007322--7007455	59	2.2	60	81	5	164	34	21	3	40	1.71
7008038--7008067	14	2.1	15	93	6	53	60	0	40	0	0.97
7008312--7008490	97	1.8	98	90	1	288	21	39	32	6	1.80
7009550--7009674	41	3.0	41	83	6	130	26	25	20	28	1.99
7011619--7011681	17	3.6	17	78	17	67	33	12	7	46	1.71
7011625--7011718	18	5.3	18	71	11	59	41	10	6	41	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7011744--7012037	18	16.6	18	76	12	254	29	14	9	45	1.77
7011744--7012037	35	8.3	36	76	12	245	29	14	9	45	1.77
7014470--7014506	3	12.3	3	100	0	74	32	0	0	67	0.91
7020437--7020623	9	20.9	9	71	12	109	34	0	18	45	1.54
7020439--7020570	55	2.3	59	83	10	166	34	0	19	45	1.56
7020437--7020629	36	5.7	34	72	15	125	35	0	18	46	1.53
7020971--7021102	28	4.3	29	67	20	81	51	12	3	33	1.54
7021018--7021208	38	5.6	36	68	24	146	49	15	3	31	1.60
7020992--7021204	66	3.2	66	95	0	363	50	14	3	32	1.59
7021058--7021173	28	3.8	28	73	21	106	47	16	5	31	1.68
7023783--7024092	124	2.5	124	87	2	433	28	19	16	35	1.94
7023783--7024111	126	2.6	123	85	2	408	28	20	16	35	1.94
7024506--7024551	21	2.1	22	84	11	60	47	0	4	47	1.21
7024061--7024651	295	2.0	296	95	1	1080	36	9	13	40	1.77
7025122--7025169	21	2.3	21	85	3	71	37	37	4	20	1.72
7025309--7025358	21	2.4	21	75	0	55	44	36	0	20	1.52
7025436--7025476	14	2.9	14	81	3	55	56	26	0	17	1.41
7026876--7027103	43	5.3	41	77	10	206	31	29	17	21	1.96
7026899--7027107	86	2.4	87	86	4	300	31	29	17	21	1.96
7031702--7031774	23	3.1	23	86	9	103	28	6	6	57	1.51
7031716--7031774	23	2.6	23	97	0	109	32	3	6	57	1.41
7032934--7033090	41	3.8	41	86	1	215	28	27	22	22	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7032934--7033090	83	1.9	82	85	1	215	28	27	22	22	1.99
7033128--7033263	40	3.4	40	82	6	168	16	21	24	37	1.94
7033206--7033438	124	1.9	124	96	0	430	21	20	23	35	1.96
7036755--7036881	41	3.1	41	89	0	191	33	18	27	20	1.96
7036810--7036876	20	3.3	20	68	12	64	35	19	25	19	1.95
7041502--7041566	27	2.4	28	87	10	98	30	0	23	46	1.53
7041647--7041682	18	1.9	19	88	5	56	41	0	2	55	1.14
7042448--7042572	55	2.3	54	80	4	142	24	10	15	49	1.75
7042582--7042702	55	2.2	55	88	1	181	28	7	14	48	1.71
7051990--7052034	21	2.1	21	83	0	54	22	33	20	24	1.97
7052403--7052492	41	2.2	41	86	4	119	31	32	22	14	1.94
7056214--7056254	20	2.1	18	86	13	55	63	4	0	31	1.15
7056921--7056988	21	3.0	24	77	14	72	39	13	5	41	1.68
7056944--7057040	21	4.7	21	92	2	153	39	11	9	40	1.73
7060608--7060649	16	2.5	18	77	14	54	45	2	2	50	1.27
7064390--7064435	11	4.2	11	83	10	67	17	34	2	45	1.61
7064389--7064431	22	2.0	22	95	0	77	18	32	2	46	1.62
7064424--7064501	40	2.0	40	89	5	122	26	28	0	44	1.54
7064390--7064453	11	5.8	12	79	17	52	21	32	1	43	1.62
7065485--7065509	7	3.6	7	100	0	50	28	0	12	60	1.32
7066155--7066197	18	2.4	18	88	0	59	18	27	9	44	1.80
7066680--7066889	116	1.8	117	80	9	259	40	6	7	46	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7067653--7067690	15	2.6	15	91	4	60	44	34	0	21	1.52
7072830--7073054	112	2.0	113	99	0	443	38	19	8	33	1.81
7080096--7080142	17	2.8	17	71	12	51	74	0	21	4	0.99
7083780--7083833	25	2.2	25	86	6	74	24	14	3	57	1.54
7084616--7084640	7	3.6	7	100	0	50	88	0	0	12	0.53
7085544--7085587	7	6.3	7	82	17	56	68	0	15	15	1.22
7085544--7085587	21	2.1	21	91	0	70	68	0	15	15	1.22
7086928--7087066	44	3.2	44	67	15	115	25	26	22	25	2.00
7086823--7087405	88	6.6	88	81	2	637	28	24	24	23	2.00
7089273--7089329	3	19.0	3	80	7	53	33	5	3	57	1.38
7089368--7089442	20	3.5	20	72	19	69	25	5	6	62	1.41
7091853--7091909	3	19.0	3	80	7	53	33	5	3	57	1.38
7091948--7092022	20	3.5	20	72	19	69	25	5	6	62	1.41
7096488--7096514	2	13.5	2	100	0	54	48	0	0	51	1.00
7111322--7111356	18	1.9	18	88	0	52	28	17	11	42	1.83
7117651--7117840	62	3.1	62	100	0	380	36	17	14	31	1.90
7121760--7121897	32	4.3	32	87	0	188	38	21	21	19	1.94
7121905--7121955	26	2.0	26	92	0	84	33	25	23	17	1.96
7122071--7122175	24	4.4	24	80	7	97	44	23	8	22	1.80
7122083--7122178	24	4.0	24	80	8	106	45	22	7	23	1.77
7122196--7122275	27	3.0	27	81	5	92	26	20	17	36	1.94
7122258--7122302	23	2.0	23	86	8	65	24	20	22	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7122317--7122458	27	5.3	27	81	5	155	21	18	17	42	1.89
7128137--7128196	5	12.0	5	100	0	120	0	20	0	80	0.72
7130649--7130689	19	2.1	20	86	4	57	56	4	9	29	1.53
7131140--7131278	40	3.5	40	71	8	115	29	17	23	28	1.97
7139695--7139771	40	1.9	40	83	0	100	31	18	19	31	1.96
7150398--7150449	28	2.0	25	85	11	68	51	3	5	38	1.44
7154827--7154857	11	2.8	11	100	0	62	9	16	16	58	1.63
7155578--7155637	33	1.9	34	83	16	85	16	11	1	70	1.25
7159927--7160108	90	2.0	90	98	0	355	41	11	22	24	1.87
7162885--7162918	18	1.9	17	88	5	50	70	0	5	23	1.09

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136