genome.fa.s10.2.7.7.80.10.50.1000.80.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  80  of  136  ( 16211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26267370--26267441	26	2.8	26	78	4	74	31	25	25	18	1.97
26267616--26267703	27	3.3	27	84	6	115	17	14	20	47	1.82
26274889--26275006	28	4.0	28	81	12	130	27	23	24	23	2.00
26274928--26275005	28	2.8	28	98	0	147	24	24	25	25	2.00
26275349--26275408	27	2.2	28	81	3	77	21	20	20	38	1.94
26275362--26275478	27	4.4	25	81	10	117	17	18	18	45	1.86
26275362--26275465	54	1.9	54	86	7	149	16	19	20	44	1.87
26275362--26275478	54	2.2	54	83	9	141	17	18	18	45	1.86
26275686--26275738	19	2.8	19	78	16	65	24	41	18	15	1.89
26299371--26299748	126	3.0	124	87	4	517	29	15	22	33	1.94
26299418--26299748	124	2.6	126	89	2	506	28	16	22	33	1.95
26302932--26303342	23	16.9	23	71	21	272	28	0	26	44	1.57
26302962--26303269	29	12.1	28	70	23	182	28	0	27	44	1.55
26302937--26303043	51	2.1	51	91	0	169	26	0	30	42	1.55
26302937--26303342	74	5.5	72	76	14	311	28	0	27	44	1.57
26303063--26303103	22	1.9	22	95	5	75	24	0	31	43	1.54
26303166--26303204	21	1.9	20	94	5	69	25	0	33	41	1.56
26303105--26303324	68	3.1	67	82	14	232	29	0	26	44	1.58
26303862--26303896	18	1.9	18	94	0	61	34	8	31	25	1.86
26304543--26304567	7	3.6	7	100	0	50	60	12	0	28	1.32
26305751--26305785	10	3.2	11	88	12	54	45	0	37	17	1.48
26306985--26307055	26	2.7	26	97	0	133	22	23	23	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26308429--26308581	76	2.0	76	96	0	279	30	16	22	30	1.96
26313054--26313180	26	4.9	26	78	2	105	31	14	11	41	1.83
26322488--26322546	22	2.7	22	79	7	57	38	18	5	37	1.73
26337129--26337160	16	1.9	16	93	6	55	46	3	0	50	1.17
26337162--26337231	37	1.9	36	82	8	88	55	2	2	38	1.29
26337157--26337365	67	3.1	67	69	8	217	49	2	2	44	1.31
26337224--26337293	37	1.9	36	82	8	88	38	2	2	55	1.29
26338969--26339000	15	2.1	15	94	0	55	75	9	0	15	1.05
26340816--26340874	20	3.0	20	76	0	73	40	16	28	13	1.87
26342824--26342851	7	4.0	7	100	0	56	14	0	0	85	0.59
26344439--26344556	45	2.6	45	86	0	155	18	17	18	44	1.87
26349445--26349502	21	2.5	25	81	15	72	55	12	0	32	1.37
26349445--26349511	24	3.0	23	76	6	66	52	11	0	35	1.39
26349673--26349719	20	2.3	20	88	0	76	31	14	10	42	1.80
26349798--26349871	24	3.0	25	76	7	71	44	9	0	45	1.36
26350261--26350394	43	3.1	42	78	4	119	26	19	18	35	1.95
26350295--26350396	43	2.4	43	84	0	123	25	17	19	37	1.94
26356582--26356784	59	3.5	59	87	2	288	43	5	6	44	1.52
26356614--26356765	31	5.1	29	67	16	89	46	5	4	44	1.46
26357041--26357078	19	2.0	20	89	5	60	57	5	0	36	1.21
26356989--26357443	59	7.8	59	86	2	594	46	3	4	45	1.42
26359395--26359443	25	2.0	25	91	0	80	28	24	28	18	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26370233--26370339	53	2.0	53	100	0	214	54	12	16	16	1.71
26371537--26371570	17	2.0	17	88	0	50	52	14	0	32	1.42
26379035--26379076	12	4.0	11	80	20	54	50	16	0	33	1.46
26379422--26379498	38	2.0	41	87	7	115	41	6	6	45	1.56
26379628--26379654	13	2.1	13	100	0	54	7	44	7	40	1.60
26385536--26385657	40	3.1	40	91	3	187	37	23	0	38	1.55
26386600--26386657	15	3.9	14	72	14	53	31	0	1	67	1.01
26386600--26386666	24	2.9	23	76	8	64	32	1	1	64	1.12
26390926--26391031	52	2.0	52	96	0	194	44	7	19	28	1.78
26391549--26391621	38	1.9	37	86	8	103	45	1	21	31	1.61
26397536--26397581	18	2.5	18	86	10	58	28	2	2	67	1.14
26397871--26397980	51	2.2	51	80	8	118	64	9	22	3	1.38
26400430--26400454	10	2.5	10	100	0	50	84	0	0	16	0.63
26400449--26400483	18	1.9	18	94	0	61	74	2	0	22	0.95
26400430--26400485	20	2.8	20	78	5	60	76	1	0	21	0.87
26401019--26401068	18	2.7	18	93	6	82	34	0	6	60	1.21
26403100--26403138	19	2.1	19	85	4	53	38	0	2	58	1.12
26403314--26403338	10	2.5	10	100	0	50	32	0	0	68	0.90
26406835--26406881	11	4.2	11	88	2	67	23	34	0	42	1.54
26406835--26406899	22	2.9	22	88	6	87	26	32	0	41	1.56
26406834--26406899	11	5.9	11	74	22	66	25	31	0	42	1.55
26406863--26406958	51	1.9	50	84	4	122	28	27	2	42	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26409271--26409317	15	3.1	15	90	0	76	55	23	0	21	1.44
26409292--26409855	22	25.7	22	81	6	635	44	28	0	25	1.58
26409292--26409855	43	12.9	44	82	5	635	44	28	0	25	1.58
26409292--26409855	108	5.1	108	83	6	661	44	28	0	25	1.58
26409695--26409756	29	2.1	30	88	8	92	50	24	0	25	1.50
26413998--26414066	3	22.3	3	72	16	52	33	0	2	63	1.09
26413998--26414066	21	3.2	22	79	8	79	33	0	2	63	1.09
26413998--26414066	13	5.3	13	72	17	54	33	0	2	63	1.09
26414204--26414234	13	2.3	14	94	5	55	6	3	6	83	0.88
26414225--26414271	20	2.5	18	83	16	60	25	6	0	68	1.13
26414238--26414280	18	2.2	20	84	8	54	34	4	2	58	1.32
26414236--26414283	20	2.4	20	86	6	62	35	6	2	56	1.36
26418970--26419011	7	6.0	7	81	18	52	69	0	16	14	1.20
26418970--26419011	21	2.0	21	86	9	59	69	0	16	14	1.20
26420318--26421078	132	5.8	132	92	0	1236	29	19	24	26	1.98
26421060--26421694	100	6.3	100	88	1	887	31	20	23	25	1.98
26421120--26421791	150	4.5	150	78	3	706	31	20	23	25	1.98
26421620--26421949	100	3.3	100	89	1	493	28	20	24	25	1.99
26421070--26421944	200	4.4	200	84	2	776	30	20	23	25	1.99
26421116--26421944	150	5.5	150	76	4	627	30	20	23	25	1.99
26423431--26423499	3	22.3	3	75	16	61	34	0	1	63	1.03
26423431--26423499	21	3.2	22	79	8	79	34	0	1	63	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26423431--26423499	13	5.3	13	75	17	63	34	0	1	63	1.03
26423431--26423499	10	7.4	9	75	15	61	34	0	1	63	1.03
26424717--26425281	126	4.5	125	86	6	775	30	23	16	30	1.96
26454139--26454168	15	2.0	15	93	0	51	43	6	3	46	1.46
26454283--26454349	34	1.9	35	90	3	109	32	5	13	47	1.67
26455216--26455316	51	2.0	51	88	3	150	32	25	0	40	1.63
26456078--26456721	321	2.0	321	92	0	1083	27	19	22	30	1.98
26459155--26459333	45	3.6	45	70	20	151	39	2	10	48	1.49
26459200--26459379	60	3.2	60	64	22	174	38	3	10	47	1.55
26459135--26459380	105	2.3	105	98	0	474	39	2	9	48	1.51
26462453--26462830	125	3.0	125	92	0	614	32	23	14	29	1.94
26463428--26463487	30	2.0	31	83	9	79	58	8	0	33	1.28
26480746--26480817	37	1.9	37	97	0	135	27	11	22	38	1.88
26484793--26484857	25	2.6	26	85	4	73	38	3	0	58	1.14
26484890--26484940	25	2.1	24	82	10	59	45	1	1	50	1.24
26485050--26485088	19	2.0	20	90	5	62	41	7	5	46	1.55
26489052--26489098	20	2.5	20	82	6	53	59	0	4	36	1.17
26489483--26489584	43	2.4	43	86	0	150	44	11	7	36	1.70
26493637--26493761	46	2.7	46	82	0	160	29	12	24	32	1.93
26497332--26497518	50	3.8	50	79	6	182	20	28	23	27	1.99
26499674--26499708	13	2.7	13	100	0	70	45	22	0	31	1.53
26504058--26504289	113	2.0	115	97	2	441	34	7	9	48	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26509920--26510009	38	2.4	38	92	1	146	30	20	12	37	1.89
26513181--26513233	26	2.0	26	92	0	88	20	24	32	22	1.98
26513210--26513429	42	5.4	42	73	14	181	21	15	26	35	1.94
26513207--26513434	85	2.8	80	84	7	282	22	16	26	34	1.95
26532916--26532991	25	3.0	25	74	0	80	27	27	23	21	1.99
26532959--26533016	25	2.3	25	85	5	73	31	27	20	20	1.98
26537128--26537170	22	2.0	22	86	9	61	25	4	23	46	1.71
26543145--26545119	993	2.0	992	88	1	2938	27	21	17	33	1.96
26552332--26552363	2	16.0	2	100	0	64	50	0	0	50	1.00
26554580--26554703	62	2.0	63	87	3	180	34	13	20	30	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136