genome.fa.s10.2.7.7.80.10.50.1000.18.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  18  of  136  ( 16211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5746486--5746555	32	2.2	32	84	7	88	45	8	14	31	1.75
5747902--5748562	114	5.8	113	84	2	820	24	21	26	28	1.99
5747920--5748571	229	2.8	229	89	1	961	24	21	25	27	1.99
5748702--5748733	15	2.1	15	94	0	55	31	0	40	28	1.57
5748750--5748778	8	3.8	8	90	9	51	20	0	41	37	1.53
5748750--5748778	15	1.9	15	100	0	58	20	0	41	37	1.53
5749610--5749649	21	1.9	21	100	0	80	75	0	0	25	0.81
5749591--5749785	105	1.9	105	88	5	297	48	12	10	28	1.74
5750596--5750645	22	2.3	22	100	0	100	22	16	18	44	1.87
5752699--5752759	30	2.0	30	84	6	79	45	6	0	47	1.28
5752708--5752752	23	2.0	22	86	4	63	46	6	0	46	1.29
5752714--5752796	42	2.0	42	83	9	107	44	3	0	51	1.18
5752768--5752811	20	2.3	19	84	4	52	47	2	0	50	1.13
5752813--5752922	9	12.7	9	68	18	63	45	20	2	31	1.65
5752820--5752858	20	2.0	19	95	5	69	53	15	0	30	1.42
5752832--5752922	25	3.7	25	79	1	94	46	19	3	30	1.66
5755000--5755252	43	5.9	42	78	5	229	29	20	24	25	1.99
5755340--5755382	21	2.0	22	90	4	70	39	25	20	13	1.90
5755899--5755923	7	3.6	7	100	0	50	12	0	0	88	0.53
5761854--5762153	148	2.0	147	89	3	458	49	5	8	37	1.57
5770978--5771170	106	1.8	106	86	3	271	29	17	26	26	1.97
5779647--5779718	34	2.1	35	89	2	110	51	16	9	22	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5783959--5784000	22	2.0	22	85	4	59	50	7	4	38	1.51
5789133--5789515	44	8.7	43	73	9	231	27	23	18	30	1.98
5789658--5789902	43	5.7	43	91	0	393	23	24	21	30	1.99
5791125--5791152	6	4.7	6	100	0	56	14	14	0	71	1.15
5797553--5797593	19	2.2	19	86	4	57	4	24	53	17	1.63
5801134--5801170	14	2.6	14	86	0	56	40	0	16	43	1.48
5801447--5801486	3	13.3	3	94	0	71	62	0	0	37	0.95
5801447--5801492	9	5.1	9	94	0	56	58	0	2	39	1.10
5803548--5803584	19	1.9	19	94	0	65	43	10	2	43	1.53
5803832--5803872	18	2.3	18	86	0	55	24	2	12	60	1.43
5808788--5808827	17	2.3	18	86	4	55	80	2	10	7	1.00
5812424--5812475	12	4.5	11	86	13	70	3	17	0	78	0.89
5812427--5812470	11	4.0	10	88	11	52	2	18	0	79	0.83
5812423--5812470	17	2.8	17	87	9	71	2	20	0	77	0.88
5812426--5812485	23	2.6	24	82	15	81	5	16	0	78	0.92
5812424--5812499	16	4.6	16	76	12	66	5	19	0	75	1.00
5812426--5812476	6	8.7	6	83	16	63	3	15	0	80	0.86
5813109--5813245	65	2.1	65	84	6	181	29	26	22	21	1.99
5815774--5815874	26	3.9	26	89	0	139	14	19	26	38	1.91
5817944--5817981	21	1.9	19	85	15	51	10	10	0	78	0.95
5818305--5818364	29	2.1	29	100	0	120	43	6	6	43	1.57
5819420--5819467	20	2.5	20	76	10	55	47	2	10	39	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5822554--5822727	42	4.2	42	99	0	341	35	7	23	33	1.83
5824902--5824949	16	2.9	16	81	3	51	79	4	6	10	1.05
5830030--5830083	26	2.1	26	89	6	83	27	20	12	38	1.89
5832742--5832818	13	5.9	13	74	17	70	36	6	18	38	1.76
5833524--5833568	8	5.2	8	80	15	54	11	2	4	82	0.91
5834569--5834595	12	2.2	12	100	0	54	18	7	0	74	1.05
5837174--5837207	3	11.7	3	93	6	61	29	0	0	70	0.87
5837740--5837772	18	1.9	17	88	11	50	12	36	42	9	1.74
5847185--5847264	30	2.7	30	96	0	142	23	21	6	48	1.72
5847210--5847260	15	3.4	15	68	10	50	23	19	7	49	1.74
5865991--5866052	21	3.0	21	80	4	72	37	22	38	1	1.64
5869868--5869912	18	2.7	16	83	16	56	37	6	2	53	1.40
5870048--5870072	12	2.1	12	100	0	50	44	0	8	48	1.32
5873961--5874079	54	2.2	54	83	3	159	34	14	28	22	1.93
5873944--5874048	27	3.9	27	85	0	147	35	13	28	22	1.92
5879167--5879198	15	2.1	15	94	0	55	53	0	15	31	1.43
5880936--5880977	21	2.0	22	82	17	54	23	28	2	45	1.66
5885456--5885750	146	2.0	147	97	0	565	27	16	21	34	1.95
5886309--5886340	12	2.6	13	85	14	50	18	12	28	40	1.87
5886321--5886389	33	2.1	33	91	5	113	13	5	37	43	1.67
5896520--5896564	21	2.1	21	83	0	54	55	22	4	17	1.60
5896527--5896570	21	2.1	21	86	0	61	59	18	4	18	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5902679--5902712	17	2.0	17	88	0	50	55	2	26	14	1.53
5909218--5909276	5	11.8	5	78	10	59	23	1	0	74	0.91
5917339--5917376	18	2.1	18	90	0	58	63	7	0	28	1.23
5917786--5917836	20	2.6	19	81	9	57	56	1	5	35	1.35
5919174--5919224	20	2.5	22	73	23	56	27	7	0	64	1.21
5919986--5920033	20	2.5	20	76	10	55	47	2	10	39	1.49
5920055--5920079	13	1.9	13	100	0	50	44	0	0	56	0.99
5922819--5922891	24	2.9	26	82	10	89	45	1	0	53	1.09
5922833--5922902	24	2.9	22	81	12	68	44	1	0	54	1.09
5922907--5922970	23	2.6	25	85	9	87	51	0	0	48	1.00
5922894--5922959	18	3.6	18	74	13	62	48	0	1	50	1.10
5927900--5927955	25	2.2	25	80	0	67	39	26	16	17	1.91
5937420--5937499	32	2.5	32	85	0	115	52	16	2	28	1.56
5938927--5938968	21	2.0	21	90	0	66	45	11	7	35	1.69
5941040--5941076	4	9.2	4	100	0	74	51	24	0	24	1.49
5945451--5945485	8	4.1	8	89	10	52	71	0	5	22	1.07
5951779--5951808	16	1.9	15	93	6	51	30	0	16	53	1.44
5961932--5961990	21	2.8	21	73	12	57	64	0	13	22	1.28
5963403--5963430	11	2.5	11	100	0	56	21	0	0	78	0.75
5965008--5965196	94	2.0	95	97	1	362	39	8	7	44	1.63
5965024--5965220	94	2.1	94	90	0	304	38	7	9	44	1.65
5966060--5966222	78	2.1	79	97	2	312	26	8	5	59	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5966378--5966415	5	7.8	5	94	5	69	18	0	0	81	0.69
5977993--5978477	44	10.6	44	73	13	316	33	19	18	28	1.96
5977950--5978333	138	2.8	140	78	8	366	32	19	20	28	1.96
5980083--5980110	5	5.6	5	100	0	56	17	0	0	82	0.68
5983335--5983429	42	2.3	42	84	0	127	15	33	25	25	1.95
5983335--5983445	42	2.6	42	82	2	116	14	32	27	26	1.95
5990884--5990926	10	4.2	10	80	13	52	72	0	6	20	1.08
5990897--5990955	17	3.6	16	73	15	57	76	0	5	18	0.97
5990893--5990957	22	3.0	21	80	13	62	75	0	4	20	0.98
6000110--6000138	2	14.5	2	100	0	58	51	0	48	0	1.00
6013340--6013370	1	31.0	1	100	0	62	0	0	0	100	0.00
6014718--6014757	21	1.9	21	84	0	53	40	17	12	30	1.86
6018449--6018492	22	2.0	23	86	13	65	54	6	2	36	1.40
6019753--6019871	44	2.7	44	72	18	113	25	15	28	30	1.96
6022773--6022835	33	1.9	33	90	0	99	23	17	20	38	1.93
6025286--6025442	78	2.0	79	98	1	307	39	17	15	27	1.90
6025488--6025557	3	23.3	3	88	0	104	62	1	4	31	1.23
6027187--6027650	44	10.3	44	77	10	267	29	20	18	32	1.96
6027376--6027665	131	2.2	132	87	4	408	30	20	16	33	1.95
6027376--6027665	44	6.6	44	85	4	347	30	20	16	33	1.95
6027418--6027759	131	2.6	131	83	6	395	29	20	18	31	1.96
6037688--6038151	44	10.3	44	77	10	267	29	20	18	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6037877--6038166	131	2.2	132	87	4	408	30	20	16	33	1.95
6037877--6038166	44	6.6	44	85	4	347	30	20	16	33	1.95
6037919--6038260	131	2.6	131	83	6	395	29	20	18	31	1.96
6060554--6060603	20	2.5	20	76	0	55	60	2	4	34	1.27
6060719--6060780	3	20.3	3	80	9	72	59	0	4	35	1.19
6061375--6061404	10	2.8	11	95	5	53	80	0	6	13	0.91
6062324--6062522	44	4.5	44	72	9	163	30	25	12	32	1.92
6062401--6062539	45	3.1	44	68	13	104	29	23	17	29	1.97
6062374--6062539	89	1.9	89	85	2	235	31	24	15	29	1.95
6063824--6063930	47	2.2	47	86	8	144	13	28	14	44	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136