genome.fa.s10.2.7.7.80.10.50.1000.111.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  111  of  136  ( 16211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37558821--37558890	27	2.7	26	84	10	81	32	22	24	20	1.97
37558955--37559036	24	3.4	24	84	3	103	47	24	6	21	1.73
37559057--37559324	27	9.9	27	76	11	185	24	18	19	38	1.93
37559058--37559286	54	4.2	54	84	4	282	24	20	18	37	1.94
37559059--37559286	81	2.8	80	80	5	269	24	20	18	37	1.94
37559264--37559337	27	2.7	27	83	6	96	22	13	17	45	1.83
37559573--37559615	17	2.4	17	80	7	50	20	44	20	13	1.86
37565691--37565720	12	2.6	12	94	5	53	56	10	0	33	1.32
37572739--37573101	26	14.3	25	68	17	137	28	7	4	59	1.43
37572828--37573030	27	7.7	27	69	16	108	27	6	4	61	1.40
37572819--37573101	26	11.0	25	72	14	159	28	6	4	60	1.41
37572891--37573032	75	1.9	74	81	9	173	30	7	4	58	1.44
37572912--37573101	50	3.8	49	78	8	186	27	6	4	60	1.43
37573781--37573821	20	2.0	20	100	0	82	17	19	14	48	1.81
37585406--37585544	51	2.7	50	81	6	172	25	17	25	30	1.97
37585548--37585645	46	2.2	43	82	12	117	24	18	24	32	1.97
37585770--37585801	16	2.0	16	93	0	55	59	0	15	25	1.36
37587414--37587708	46	6.6	45	73	8	201	30	21	20	27	1.98
37587414--37587620	44	4.6	44	76	7	175	28	22	20	27	1.99
37587414--37587749	179	1.9	179	92	2	568	30	22	19	28	1.97
37588149--37588188	20	1.9	22	90	10	66	17	50	17	15	1.79
37589252--37589511	26	10.0	26	69	14	153	28	6	4	60	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37593841--37593910	30	2.4	30	79	11	74	38	1	5	54	1.33
37593907--37593979	31	2.5	28	75	14	67	42	6	5	45	1.54
37597244--37597296	26	2.0	26	92	0	88	39	9	28	22	1.85
37606437--37606504	18	3.8	18	73	11	68	30	22	25	22	1.99
37608748--37608802	24	2.2	24	80	6	65	54	5	1	38	1.34
37628152--37628289	50	2.8	50	84	0	159	27	24	27	20	1.99
37646934--37647072	68	2.0	68	90	0	215	30	14	15	39	1.87
37649614--37649765	38	4.0	38	77	0	135	24	20	21	33	1.97
37649625--37649790	76	2.2	73	82	5	190	22	21	23	32	1.98
37659795--37659856	28	2.2	28	94	0	106	27	25	25	20	1.99
37659861--37659917	28	2.0	28	89	0	87	26	21	24	28	1.99
37660246--37660551	27	11.3	27	85	2	364	17	16	20	44	1.87
37668874--37669000	65	2.0	65	92	4	213	22	13	15	48	1.79
37670512--37670547	12	2.9	12	91	4	54	16	27	0	55	1.42
37670512--37670547	18	1.9	19	88	5	56	16	27	0	55	1.42
37672408--37672450	23	1.9	22	85	4	59	60	6	0	32	1.23
37672594--37672629	16	2.2	16	90	0	54	55	2	5	36	1.38
37679001--37679140	65	2.2	65	93	0	235	37	27	15	19	1.92
37680659--37680697	20	2.0	20	84	0	51	46	2	7	43	1.46
37684705--37684739	17	2.1	17	89	5	54	57	5	2	34	1.37
37693223--37693255	17	1.9	17	93	0	57	15	12	12	60	1.59
37700289--37700322	15	2.2	15	89	5	50	32	5	17	44	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37708196--37708363	42	4.0	42	100	0	336	30	28	19	21	1.97
37709526--37709595	34	2.1	34	100	0	140	40	11	22	25	1.88
37712454--37712487	17	2.1	17	88	5	52	64	23	0	11	1.26
37719136--37719174	20	1.9	21	89	5	62	28	0	17	53	1.44
37722357--37722524	53	3.3	53	61	18	131	35	7	11	45	1.69
37722306--37722516	98	2.2	98	100	0	422	35	7	10	46	1.67
37731923--37732918	72	13.9	72	76	2	728	31	24	16	27	1.96
37731923--37732685	288	2.6	288	83	1	929	32	24	16	27	1.96
37741529--37741569	15	2.6	16	85	14	59	26	2	4	65	1.25
37744872--37744936	28	2.3	28	86	0	85	30	23	26	20	1.98
37745256--37745320	28	2.3	28	78	0	67	29	24	27	18	1.98
37744692--37745459	384	2.0	384	98	0	1500	32	27	20	19	1.97
37745547--37745761	64	3.4	64	78	7	231	36	22	21	19	1.95
37745548--37745726	96	1.9	96	84	2	243	36	22	21	18	1.95
37745554--37745781	32	7.1	32	78	5	178	37	23	20	18	1.94
37745831--37745900	27	2.7	26	78	10	63	32	22	24	20	1.97
37746040--37746542	27	18.7	27	77	3	354	23	20	18	37	1.94
37746040--37746407	81	4.6	81	81	1	409	24	21	18	35	1.95
37765487--37765734	27	9.2	27	81	6	245	19	18	18	43	1.88
37765487--37765734	81	3.1	81	84	4	306	19	18	18	43	1.88
37768743--37768793	21	2.4	21	86	0	66	37	3	35	23	1.74
37769231--37769264	17	2.0	17	100	0	68	23	11	5	58	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37776860--37776936	19	4.1	19	93	0	118	24	12	29	32	1.93
37779838--37779881	22	2.0	23	86	4	63	40	2	4	52	1.34
37786510--37786563	25	2.1	26	83	10	67	33	3	1	61	1.25
37794922--37794975	23	2.3	23	77	0	63	27	18	27	25	1.98
37798509--37798581	23	3.2	23	86	0	101	24	21	24	28	1.99
37799767--37799906	49	2.9	49	90	0	217	23	12	29	34	1.92
37802412--37802513	25	4.1	25	80	10	113	26	22	24	26	2.00
37811497--37811538	21	2.0	21	100	0	84	61	0	23	14	1.32
37811584--37811631	24	2.1	22	81	14	53	14	4	6	75	1.16
37813090--37813158	21	3.2	21	67	25	63	37	7	8	46	1.63
37813079--37813166	43	2.0	43	97	0	167	42	7	9	40	1.66
37813099--37813168	22	3.2	22	62	18	56	41	8	8	41	1.66
37813700--37813816	40	2.9	40	83	0	135	38	18	18	23	1.93
37813768--37813816	20	2.5	20	79	0	62	32	22	20	24	1.98
37817464--37817506	19	2.3	19	84	4	52	25	27	0	46	1.53
37826967--37827022	22	2.4	23	82	5	60	39	1	17	41	1.60
37827267--37827335	25	2.8	25	80	8	77	36	4	17	42	1.69
37841161--37841236	23	3.1	25	78	14	70	67	0	1	31	0.99
37841161--37841236	19	4.0	19	72	16	68	67	0	1	31	0.99
37842767--37842900	67	2.0	67	100	0	268	41	16	17	23	1.89
37847466--37847507	19	2.3	18	84	8	57	21	7	11	59	1.56
37858231--37858276	23	2.0	23	95	0	83	41	8	0	50	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37858346--37858415	27	2.6	27	93	4	115	27	28	28	15	1.96
37858458--37858603	4	36.0	4	76	16	117	70	0	29	0	0.87
37858497--37858637	40	3.4	43	81	15	188	70	0	29	0	0.93
37858462--37858665	73	2.9	68	79	17	170	69	0	29	0	0.92
37858459--37858663	82	2.5	79	85	10	249	70	0	29	0	0.91
37858502--37858643	43	3.3	45	75	19	160	69	0	30	0	0.94
37866458--37866495	18	2.1	18	90	0	58	2	42	15	39	1.61
37867253--37867282	3	10.0	3	100	0	60	66	33	0	0	0.92
37867281--37867327	3	15.3	3	91	4	76	63	4	0	31	1.13
37867373--37867411	20	2.0	21	85	10	55	66	10	0	23	1.22
37867438--37867475	11	3.5	11	85	7	51	0	26	0	73	0.83
37867442--37867475	10	3.4	10	92	8	52	0	26	0	73	0.83
37867574--37867658	27	3.1	27	87	0	125	15	30	28	25	1.96
37867711--37867749	19	2.1	19	90	0	60	61	2	7	28	1.37
37870356--37870392	9	4.1	9	92	0	65	45	13	10	29	1.77
37875045--37875085	18	2.3	18	86	0	55	39	7	26	26	1.82
37883840--37883883	23	1.9	22	82	17	54	36	25	0	38	1.56
37883928--37884016	45	2.0	45	93	0	151	33	24	16	24	1.96
37887653--37887736	42	2.0	42	88	0	123	47	10	11	29	1.74
37887774--37887819	19	2.5	19	89	10	69	45	8	4	41	1.55
37888720--37888750	15	2.1	15	100	0	62	38	19	19	22	1.93
37892328--37892411	42	2.0	42	95	0	150	46	13	10	29	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37892330--37892425	42	2.3	42	88	0	138	47	12	7	32	1.69
37906270--37906348	37	2.1	37	95	0	140	25	10	25	39	1.87
37909779--37909870	26	3.6	26	81	7	91	15	26	22	35	1.94
37909779--37909895	25	4.6	25	77	11	96	17	26	21	34	1.96
37915383--37915434	26	2.0	26	100	0	104	38	0	11	50	1.39
37919692--37919732	20	2.0	20	85	0	55	31	4	0	63	1.15
37919852--37919888	18	2.0	19	89	5	58	51	0	2	45	1.15
37921321--37921346	1	26.0	1	100	0	52	0	100	0	0	0.00
37923238--37923462	43	5.3	42	87	5	294	32	20	23	24	1.98
37923238--37923504	41	6.3	41	84	7	290	31	19	23	25	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136