genome.fa.s10.2.7.7.80.10.50.1000.60.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  60  of  136  ( 16211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19790766--19790795	15	1.9	15	93	6	51	83	0	13	3	0.77
19803295--19803370	25	3.0	26	80	14	81	77	1	19	1	0.91
19807925--19807968	21	2.1	21	83	8	54	25	9	2	63	1.35
19808297--19808340	21	2.1	21	83	8	54	25	9	2	63	1.35
19807686--19808429	372	2.0	372	98	0	1425	31	16	16	36	1.91
19812725--19812765	21	2.0	20	85	4	55	19	2	7	70	1.22
19814739--19814777	20	2.0	20	85	10	53	35	7	17	38	1.79
19818383--19818789	198	2.1	198	98	0	789	27	17	22	31	1.97
19822977--19823086	49	2.2	49	100	0	220	30	10	30	29	1.91
19826499--19826561	21	3.0	21	88	2	90	30	3	33	33	1.74
19835344--19835368	12	2.1	12	100	0	50	24	28	0	48	1.52
19837886--19837959	20	3.8	20	81	12	91	25	25	20	28	1.99
19841381--19841499	25	4.8	25	80	10	127	25	22	25	26	2.00
19847820--19848160	27	12.6	27	83	1	398	40	20	15	23	1.90
19852191--19852326	50	2.6	50	87	6	182	25	29	18	27	1.98
19857522--19857585	22	2.9	22	83	0	92	28	29	6	35	1.82
19859471--19859539	25	2.8	25	75	16	72	23	21	24	30	1.99
19859521--19859579	25	2.4	25	85	0	73	25	20	22	32	1.98
19865237--19865341	40	2.7	40	82	2	133	38	6	8	46	1.61
19868807--19868838	16	2.0	16	100	0	64	37	25	6	31	1.81
19879073--19879110	14	2.7	15	84	12	53	0	15	0	84	0.63
19879079--19879110	14	2.4	13	94	5	55	0	15	0	84	0.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19881315--19881340	11	2.4	11	100	0	52	84	7	0	7	0.77
19920848--19920872	13	1.9	13	100	0	50	60	0	8	32	1.26
19925051--19925163	41	2.8	41	81	0	127	23	27	14	34	1.93
19929460--19929518	30	2.0	30	86	6	84	27	28	8	35	1.86
19929766--19929815	25	2.0	25	100	0	100	28	4	12	56	1.54
19934671--19934873	41	5.0	41	82	0	253	21	27	16	34	1.95
19934701--19934756	21	2.8	19	74	12	58	17	30	14	37	1.90
19934671--19934873	82	2.5	82	85	3	282	21	27	16	34	1.95
19934680--19934747	21	3.3	21	70	12	59	22	33	16	27	1.95
19936589--19936618	16	1.9	16	93	6	53	46	3	23	26	1.68
19939467--19939906	102	4.4	102	88	1	417	31	15	23	29	1.95
19939467--19939946	50	9.5	50	80	4	500	31	16	23	29	1.96
19941507--19941550	22	2.0	22	86	8	63	29	0	20	50	1.49
19946870--19946933	21	3.0	21	88	0	92	17	15	17	50	1.79
19965190--19965289	40	2.5	40	83	1	130	17	21	25	37	1.94
19968073--19968114	11	3.9	11	84	3	50	9	14	9	66	1.44
19968073--19968114	22	2.0	21	85	4	57	9	14	9	66	1.44
19969323--19969412	40	2.2	40	94	0	153	14	32	17	35	1.90
19969323--19969412	20	4.5	20	72	8	76	14	32	17	35	1.90
19969323--19969433	40	2.8	40	88	2	152	13	31	18	36	1.90
19974803--19974976	40	4.4	39	86	5	197	14	31	20	33	1.93
19974811--19974978	20	8.4	20	75	3	151	13	30	20	35	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19974821--19974982	80	2.0	80	85	2	218	12	29	22	35	1.91
19976831--19976875	20	2.2	20	88	7	65	26	6	6	60	1.47
19988229--19988355	51	2.5	50	83	5	157	24	17	27	30	1.97
19990939--19990978	6	6.7	6	85	0	53	7	17	0	75	1.03
19990939--19990979	18	2.3	18	95	0	73	9	17	0	73	1.09
19990948--19990990	18	2.4	18	88	7	61	9	20	2	67	1.30
19992973--19993045	3	24.3	3	77	0	74	34	2	4	58	1.31
19993224--19993272	25	2.0	25	87	0	71	24	6	10	59	1.53
20008774--20008805	6	5.5	6	96	3	57	68	0	0	31	0.90
20010141--20010207	27	2.5	27	85	4	82	25	28	10	35	1.89
20011206--20011249	21	2.1	21	100	0	88	31	25	9	34	1.87
20023969--20023999	15	2.1	14	94	5	53	54	0	9	35	1.33
20026903--20027205	9	34.0	9	75	12	218	33	0	19	46	1.57
20026903--20027196	52	5.3	52	85	10	333	33	0	19	46	1.55
20027406--20027467	28	2.4	24	73	19	61	53	8	3	35	1.47
20027449--20027642	38	5.7	37	71	23	165	51	13	2	33	1.53
20027421--20027635	66	3.3	66	95	0	367	51	12	2	34	1.52
20027487--20027592	28	3.4	28	73	22	77	50	11	2	35	1.53
20030165--20030210	21	2.1	22	84	11	60	47	0	4	47	1.21
20030764--20030862	7	13.9	7	71	8	74	43	34	3	19	1.66
20031008--20031074	7	9.6	7	81	0	53	46	34	0	19	1.50
20031008--20031062	14	3.9	14	80	0	74	43	38	0	18	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20031109--20031174	14	4.7	14	74	7	53	54	25	0	19	1.44
20031189--20031638	156	2.9	156	79	2	465	28	20	17	33	1.95
20032165--20032190	9	2.9	9	100	0	52	19	0	11	69	1.18
20046882--20046910	9	3.0	10	90	10	51	72	0	0	27	0.85
20047024--20047121	9	11.0	9	71	20	55	66	0	7	26	1.17
20047053--20047118	8	7.9	8	73	20	55	71	0	6	22	1.08
20047054--20047094	19	2.2	19	86	0	55	75	0	4	19	0.98
20047453--20047503	19	2.7	18	82	14	59	31	0	1	66	1.03
20047737--20047783	24	1.9	25	86	4	69	36	2	2	59	1.21
20047847--20047872	5	5.2	5	100	0	52	42	19	19	19	1.90
20048754--20048790	9	4.1	9	92	0	65	29	10	13	45	1.77
20050453--20050555	31	3.4	29	75	9	80	39	14	11	33	1.82
20053388--20053433	21	2.1	23	84	8	60	32	34	2	30	1.70
20055594--20055661	12	5.8	11	77	16	57	22	4	0	73	1.01
20055596--20055661	17	3.8	17	73	21	57	21	4	0	74	1.00
20056503--20056695	102	1.9	102	79	10	216	27	14	26	31	1.95
20056680--20056749	10	7.0	9	76	19	59	80	1	2	15	0.91
20056680--20056752	16	4.9	15	79	12	71	79	1	2	16	0.92
20060198--20060244	24	2.0	24	86	0	67	21	38	14	25	1.92
20066366--20066403	18	2.1	18	95	0	67	21	18	18	42	1.90
20072396--20072429	14	2.5	14	90	4	52	20	0	0	79	0.73
20072396--20072429	13	2.5	13	90	9	50	20	0	0	79	0.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20073393--20073431	18	2.2	18	90	4	62	33	2	0	64	1.08
20073710--20073761	22	2.3	23	87	6	72	65	3	0	30	1.10
20075290--20075361	33	2.1	35	94	5	130	30	13	2	52	1.55
20076479--20076554	40	1.9	40	86	5	109	19	28	28	22	1.98
20077442--20077483	15	2.8	15	78	7	50	35	2	0	61	1.09
20077712--20077761	21	2.4	21	83	9	66	36	22	6	36	1.79
20078367--20078407	19	2.2	19	100	0	82	36	26	0	36	1.57
20080875--20081013	63	2.2	61	80	12	158	31	8	19	40	1.82
20081128--20081282	41	3.8	41	91	0	238	27	19	20	32	1.96
20081142--20081328	82	2.3	82	80	5	200	27	20	21	29	1.98
20099489--20099598	50	2.2	50	85	0	139	27	24	28	20	1.99
20107957--20107983	13	2.1	13	100	0	54	29	0	7	62	1.22
20108101--20108276	50	3.8	43	83	11	165	23	22	33	21	1.97
20108139--20108316	50	3.5	50	85	0	230	24	21	32	21	1.98
20111884--20112068	50	3.7	50	83	3	237	25	20	30	23	1.99
20119931--20120005	33	2.2	34	92	2	125	42	13	6	37	1.70
20126491--20126528	20	1.9	19	94	5	67	5	23	0	71	1.07
20131963--20131999	17	2.2	17	95	0	65	54	2	18	24	1.57
20134355--20134721	183	2.0	184	99	0	727	29	19	13	38	1.89
20152269--20152338	35	2.0	36	97	2	133	32	30	5	31	1.81
20155313--20155358	20	2.3	21	77	11	60	8	15	2	73	1.16
20155321--20155383	23	2.9	22	77	17	69	6	14	3	76	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20156284--20156330	20	2.5	20	89	6	71	23	12	0	63	1.28
20156283--20156328	18	2.5	19	86	13	69	23	13	0	63	1.30
20157576--20157610	19	1.9	19	88	11	56	54	8	0	37	1.31
20158564--20158626	27	2.3	28	79	15	78	46	11	14	28	1.78
20159119--20159177	11	5.2	11	75	20	50	42	0	35	22	1.54
20162123--20162156	13	2.6	13	100	0	68	76	0	5	17	0.98
20162199--20162243	13	3.5	13	96	0	81	77	0	6	15	0.96
20179749--20179798	23	2.3	23	86	6	68	56	12	6	26	1.58
20180066--20180146	28	2.8	30	66	21	80	44	12	8	34	1.73
20182910--20182967	15	3.8	15	83	2	71	75	0	20	3	0.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136