genome.fa.s10.2.7.7.80.10.50.1000.54.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  54  of  136  ( 16211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17753091--17753285	59	3.3	58	84	4	241	40	14	7	37	1.75
17755935--17755968	17	1.9	18	88	5	52	17	0	55	26	1.42
17760141--17760358	108	2.0	108	99	0	427	33	11	14	40	1.82
17764686--17764758	38	1.9	38	86	5	103	23	5	17	53	1.65
17767065--17767106	21	2.0	21	85	0	57	38	2	16	42	1.61
17767568--17767654	26	3.4	26	78	12	92	18	22	21	36	1.95
17767684--17767745	24	2.6	24	82	10	90	16	24	19	40	1.91
17767684--17767801	25	4.8	25	73	7	73	22	26	18	33	1.97
17772245--17772276	12	2.7	12	95	0	55	15	9	40	34	1.80
17774366--17774428	29	2.2	29	82	0	81	33	22	17	26	1.96
17774385--17774447	29	2.2	29	82	0	72	31	17	9	41	1.82
17787002--17787036	18	1.9	18	88	0	52	45	0	37	17	1.48
17787544--17787587	18	2.4	18	80	3	52	43	4	0	52	1.22
17787697--17787770	26	2.9	26	82	6	89	35	5	20	39	1.75
17797265--17797297	14	2.2	16	89	10	52	42	12	3	42	1.57
17799711--17799944	29	8.0	30	81	7	234	37	14	27	20	1.91
17799704--17799973	58	4.6	58	82	3	290	37	13	26	22	1.91
17799711--17799973	87	3.0	88	79	8	275	38	13	26	22	1.91
17802704--17802753	23	2.1	23	85	3	64	30	22	24	24	1.99
17807603--17807653	13	3.6	13	76	19	57	17	27	37	17	1.93
17807586--17807690	30	3.5	30	89	0	156	16	29	36	18	1.92
17807810--17807861	21	2.5	21	75	6	52	25	25	26	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17821052--17821088	8	4.9	8	80	12	51	62	2	0	35	1.10
17821127--17821178	26	2.0	27	88	3	79	48	0	0	51	1.00
17822026--17822083	24	2.5	24	80	2	73	17	31	20	31	1.96
17829252--17829284	16	2.1	16	100	0	66	39	12	18	30	1.87
17830044--17830166	30	4.4	30	64	22	86	40	0	7	52	1.29
17830051--17830089	20	1.9	21	85	15	55	35	0	5	58	1.20
17830008--17830174	82	2.0	83	98	1	327	42	0	7	50	1.30
17830009--17830138	39	3.2	39	70	13	127	44	0	6	48	1.29
17830133--17830179	20	2.3	21	82	13	55	31	0	6	61	1.21
17830679--17830718	18	2.3	18	86	4	55	60	17	12	10	1.59
17831666--17831724	23	2.6	23	86	0	91	28	28	11	30	1.92
17841279--17841443	41	4.0	41	100	0	330	34	19	14	31	1.92
17846593--17846815	28	8.0	28	88	0	302	29	22	24	24	1.99
17846927--17847027	26	3.9	26	82	0	130	41	16	19	21	1.90
17847201--17847426	27	8.5	26	76	12	147	19	19	20	40	1.91
17847228--17847426	27	7.4	27	82	10	212	20	20	20	39	1.92
17847229--17847426	54	3.7	54	81	10	244	20	20	19	39	1.92
17847200--17847452	134	1.9	134	83	4	332	19	18	18	42	1.90
17873219--17873254	12	3.1	12	92	4	56	0	13	5	80	0.88
17874912--17874992	36	2.2	36	77	0	90	33	40	8	17	1.80
17876625--17876702	40	2.0	39	85	12	106	51	12	6	29	1.65
17879480--17879644	85	2.0	84	91	3	269	36	8	6	49	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17879564--17880017	138	3.3	138	93	1	732	42	6	4	46	1.51
17879705--17879921	71	3.1	71	65	19	193	40	8	4	47	1.54
17879776--17879988	67	3.1	67	64	21	179	43	7	4	44	1.53
17882568--17882604	17	2.2	17	90	0	56	13	18	2	64	1.39
17884550--17884583	17	2.0	17	88	0	50	26	2	5	64	1.30
17885779--17885853	37	2.0	37	100	0	150	26	10	26	36	1.89
17887369--17887418	16	3.2	16	72	11	50	32	4	0	64	1.12
17900562--17900591	15	1.9	16	93	6	53	43	0	0	56	0.99
17905688--17905736	5	9.6	5	78	12	55	79	0	20	0	0.73
17905688--17905736	21	2.4	21	86	10	66	79	0	20	0	0.73
17908980--17909009	16	1.9	16	93	6	53	50	20	0	30	1.49
17928020--17928140	27	4.4	27	82	6	102	23	22	14	39	1.91
17928037--17928140	27	3.9	27	84	3	120	22	23	13	41	1.89
17928050--17928135	26	3.2	25	85	8	100	22	22	12	43	1.87
17932113--17932203	46	2.0	46	97	0	173	39	18	6	35	1.77
17933477--17933539	26	2.5	25	89	2	90	33	6	14	46	1.70
17936344--17936632	143	2.0	143	97	0	542	27	20	11	40	1.87
17941369--17941404	16	2.2	16	100	0	72	38	16	25	19	1.92
17954070--17954096	6	4.5	6	100	0	54	55	0	29	14	1.40
17954293--17954333	20	2.0	20	86	9	57	48	12	4	34	1.62
17955464--17955561	27	3.7	26	76	5	88	23	10	23	42	1.84
17955436--17955571	54	2.5	53	76	7	139	25	10	23	40	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17955466--17955588	54	2.3	54	78	5	124	26	10	20	43	1.84
17970943--17971061	42	2.8	42	81	1	139	21	30	24	24	1.99
17980177--17980207	9	3.4	9	90	0	53	25	12	22	38	1.90
17984537--17984580	20	2.1	21	88	12	65	29	0	15	54	1.42
17993012--17993049	3	12.7	3	100	0	76	68	0	0	31	0.90
17994329--17994482	77	2.0	77	98	1	301	50	11	14	23	1.75
17994341--17994462	38	3.2	38	67	26	112	52	11	13	22	1.72
17995533--17995592	30	2.0	30	96	0	111	38	23	8	30	1.84
17996248--17996292	3	15.0	3	100	0	90	0	33	0	66	0.92
17997600--17997639	21	1.9	21	84	0	53	45	2	0	52	1.14
17997584--17997659	40	1.9	39	82	10	93	44	1	0	53	1.08
18003077--18003123	20	2.3	20	85	0	67	34	14	6	44	1.71
18008566--18008621	28	2.0	27	82	3	67	32	1	1	64	1.14
18012142--18012201	24	2.5	24	76	10	61	28	6	5	60	1.43
18015232--18015345	51	2.3	51	89	1	176	28	26	0	44	1.60
18015346--18015411	10	6.5	10	71	3	51	33	0	0	66	0.92
18015347--18015411	31	2.1	31	97	0	121	32	0	0	67	0.91
18016493--18016524	7	4.6	7	100	0	64	28	0	12	59	1.34
18017691--18017774	29	2.9	28	91	1	123	46	21	0	32	1.52
18017669--18017889	54	4.2	54	76	14	246	44	17	0	38	1.49
18017747--18017817	23	3.2	23	74	9	85	46	12	0	40	1.42
18017771--18017860	25	3.4	25	73	11	99	43	12	0	44	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18017980--18018899	30	30.7	30	99	0	1808	46	26	0	26	1.53
18023852--18023916	28	2.3	29	89	2	105	41	10	18	29	1.84
18024919--18024976	31	1.9	31	89	3	91	34	8	10	46	1.69
18028680--18028815	50	2.7	50	88	0	173	21	30	21	26	1.98
18030141--18030167	1	27.0	1	100	0	54	100	0	0	0	0.00
18032040--18032119	41	2.0	41	87	0	115	35	17	16	31	1.92
18033002--18033067	7	8.6	7	78	18	53	51	1	3	43	1.26
18032989--18033067	27	2.8	31	74	20	82	48	2	2	46	1.29
18032999--18033064	8	8.4	8	70	21	50	50	1	3	45	1.26
18052316--18052487	41	4.2	41	90	0	245	19	20	6	52	1.68
18053133--18053200	31	2.2	31	97	2	127	45	29	5	19	1.73
18053869--18053907	21	2.0	19	85	14	53	12	5	10	71	1.28
18054084--18054215	68	1.9	69	83	7	171	43	6	4	45	1.51
18057552--18057576	12	2.1	12	100	0	50	48	8	0	44	1.32
18060180--18060222	11	4.1	11	79	11	54	58	0	0	41	0.98
18060164--18060224	28	2.2	27	85	8	79	57	0	0	42	0.98
18061920--18061953	14	2.6	13	86	13	52	55	0	0	44	0.99
18066585--18066630	24	1.9	24	86	0	65	34	2	34	28	1.70
18067274--18067481	27	7.7	27	82	0	227	38	21	18	21	1.93
18070150--18070821	335	2.0	336	99	0	1337	42	13	15	29	1.84
18074432--18074579	35	4.2	35	81	5	156	25	18	27	29	1.98
18074405--18074598	105	1.8	104	80	6	230	26	20	26	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18085145--18085191	21	2.2	21	88	0	67	14	14	44	25	1.84
18094568--18094596	14	2.0	15	93	6	51	6	89	0	3	0.57
18107578--18107609	17	1.9	16	93	6	55	15	18	37	28	1.92
18110803--18110864	31	2.0	31	96	0	115	29	27	6	37	1.82
18111131--18111197	3	22.3	3	100	0	134	67	0	32	0	0.91
18116402--18116457	20	2.8	20	70	5	51	19	8	5	66	1.39
18120186--18120210	13	1.9	13	100	0	50	48	20	8	24	1.76
18120407--18120490	41	2.0	42	88	2	125	34	17	17	29	1.94
18122094--18122160	27	2.4	27	78	9	73	52	2	0	44	1.16
18132217--18132317	28	3.6	28	81	1	96	32	15	23	27	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136