genome.fa.s10.2.7.7.80.10.50.1000.53.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  53  of  136  ( 16211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17438105--17438219	40	2.9	40	83	7	146	32	20	23	23	1.98
17438278--17438515	41	5.8	41	86	3	309	19	22	29	28	1.98
17438742--17438854	33	3.2	35	67	23	94	17	6	30	45	1.73
17438827--17438888	7	8.7	7	82	3	70	19	0	30	50	1.48
17442431--17442525	43	2.2	43	90	0	145	33	11	9	45	1.73
17442805--17443104	43	7.1	43	88	2	428	23	19	31	26	1.98
17448990--17450211	143	8.7	144	85	2	1391	30	19	21	27	1.98
17451700--17451741	19	2.2	19	86	0	57	19	4	2	73	1.12
17451764--17451801	18	2.1	18	85	9	51	26	5	5	63	1.37
17451940--17451995	3	18.0	3	78	14	51	33	1	5	58	1.31
17453556--17453582	2	13.5	2	100	0	54	51	0	0	48	1.00
17454428--17454619	50	3.9	50	81	3	210	28	22	28	21	1.99
17459618--17459851	50	4.6	50	75	4	175	28	21	26	23	1.99
17464224--17464328	40	2.6	40	87	0	147	22	16	24	36	1.94
17464224--17464349	40	3.2	39	82	4	144	22	14	26	36	1.92
17467590--17467618	12	2.3	13	94	5	51	20	6	6	65	1.40
17471999--17472027	12	2.3	13	94	5	51	20	6	6	65	1.40
17483668--17483703	14	2.6	14	90	0	54	22	5	11	61	1.50
17503066--17503154	43	2.1	43	97	0	169	52	8	8	29	1.63
17503787--17503881	48	2.0	48	93	0	163	40	12	23	24	1.89
17509144--17509233	20	4.5	20	70	10	58	13	31	17	37	1.89
17509368--17509401	7	4.9	7	96	0	59	41	2	14	41	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17521090--17521177	40	2.2	41	79	6	99	22	19	15	42	1.89
17524801--17524838	15	2.5	15	100	0	76	21	15	34	28	1.94
17526458--17526642	27	6.9	27	85	2	221	42	19	16	21	1.89
17526594--17526671	27	2.9	27	83	5	79	41	24	19	15	1.90
17526470--17526667	81	2.4	80	79	6	193	41	19	18	20	1.91
17526689--17526809	24	5.1	24	81	2	136	28	8	19	44	1.79
17526708--17526819	47	2.4	47	86	1	152	28	7	20	43	1.78
17526691--17526819	48	2.7	48	82	1	161	29	8	19	42	1.81
17526991--17527212	63	3.5	63	81	6	252	22	19	20	37	1.94
17526996--17527209	32	6.8	32	75	4	148	22	19	20	37	1.94
17530571--17530655	19	4.6	19	72	5	66	41	14	11	32	1.82
17530575--17530681	55	1.9	55	84	0	142	41	16	12	29	1.85
17530768--17530798	16	1.9	16	93	0	53	32	25	12	29	1.93
17530798--17530847	22	2.3	22	96	0	91	34	12	14	40	1.82
17530798--17530868	22	3.2	21	88	4	88	32	14	12	40	1.83
17544264--17544543	95	3.0	94	84	2	339	31	15	26	27	1.96
17544264--17544543	94	3.0	94	85	1	346	31	15	26	27	1.96
17547631--17547830	101	2.0	101	92	2	330	25	27	6	41	1.78
17558251--17558279	13	2.2	13	100	0	58	13	20	13	51	1.75
17567170--17567198	15	1.9	15	100	0	58	27	20	13	37	1.91
17567893--17567931	20	1.9	21	84	5	53	38	30	10	20	1.86
17571893--17571940	20	2.4	20	89	6	71	56	10	20	12	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17571862--17571935	15	4.9	15	70	6	51	55	14	22	6	1.63
17572472--17572506	10	3.6	10	92	3	54	31	0	5	62	1.18
17575130--17575275	70	2.1	70	90	1	229	29	6	17	46	1.73
17578180--17578277	28	3.5	28	76	13	76	21	2	27	48	1.61
17578261--17578315	20	2.7	21	80	5	60	12	0	38	49	1.41
17578722--17579280	189	3.0	187	83	3	694	29	14	23	32	1.94
17581216--17581518	123	2.5	117	89	4	446	39	10	6	42	1.65
17581609--17581718	32	3.4	31	73	10	87	34	3	2	59	1.29
17581741--17581835	30	3.1	30	95	1	163	43	10	4	42	1.58
17581755--17582170	78	5.3	78	69	19	272	42	14	2	40	1.60
17581783--17582026	48	5.1	48	76	12	252	42	13	3	40	1.61
17581830--17582152	30	10.8	30	69	18	108	42	14	3	39	1.61
17582004--17582225	48	4.8	48	89	6	314	41	15	3	39	1.63
17583663--17583691	14	2.1	14	93	6	51	34	0	10	55	1.34
17584379--17584738	43	8.4	42	94	0	513	36	19	24	20	1.95
17588767--17589004	122	2.0	122	90	0	377	33	13	12	40	1.83
17591782--17591813	12	2.8	12	90	9	50	34	3	0	62	1.11
17598903--17598939	17	2.2	17	90	4	58	18	2	10	67	1.32
17605471--17605497	11	2.5	11	100	0	54	51	22	7	18	1.70
17608566--17608621	26	2.2	26	86	0	76	37	17	8	35	1.82
17609333--17609400	34	2.0	34	82	5	84	19	27	23	29	1.98
17611999--17612046	24	2.0	24	100	0	96	41	12	12	33	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17613635--17613676	16	2.6	16	88	0	57	28	26	4	40	1.76
17613753--17613839	41	2.1	41	93	0	147	45	19	9	25	1.79
17619913--17619952	16	2.5	16	84	8	55	67	5	5	22	1.30
17620742--17620794	27	2.0	27	88	0	79	32	11	0	56	1.35
17635984--17636035	26	2.0	26	96	0	95	17	15	13	53	1.72
17636876--17637352	261	1.8	261	85	4	685	31	21	21	25	1.98
17636976--17637890	217	4.2	217	89	1	1341	31	21	21	25	1.98
17637493--17637725	129	1.8	129	91	5	391	30	23	21	24	1.99
17636876--17637868	44	22.9	43	70	10	544	31	21	21	25	1.98
17642784--17642846	16	3.9	16	91	0	99	41	0	34	23	1.55
17642785--17642853	16	4.3	16	88	0	75	43	1	31	23	1.63
17642831--17642927	45	2.2	44	85	5	124	31	4	27	36	1.76
17645588--17645641	20	2.9	19	83	8	67	59	0	1	38	1.08
17645648--17645771	19	6.8	17	72	17	65	62	3	4	29	1.31
17645960--17646022	30	2.1	30	85	5	83	31	1	3	63	1.19
17665199--17665235	19	1.9	19	100	0	74	37	5	21	35	1.77
17672179--17672212	16	2.2	16	94	5	61	47	17	0	35	1.48
17673947--17674443	130	3.9	131	78	9	497	30	20	12	36	1.90
17674199--17674247	26	1.9	25	87	4	71	30	30	14	24	1.94
17674111--17674332	120	1.9	120	82	5	288	31	21	10	36	1.88
17673980--17674430	250	1.8	250	84	1	618	31	20	11	36	1.89
17674781--17674983	3	68.0	3	77	17	192	2	34	0	62	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17677514--17677555	22	1.9	22	100	0	84	40	21	4	33	1.74
17683394--17683437	22	1.9	24	86	9	65	65	4	2	27	1.23
17684502--17684553	22	2.4	22	74	6	61	38	13	0	48	1.43
17684910--17684950	16	2.6	15	88	7	55	48	2	2	46	1.28
17685635--17685668	6	5.7	6	100	0	68	35	47	0	17	1.48
17685691--17685717	8	3.4	8	100	0	54	66	11	0	22	1.22
17686049--17686109	9	6.6	9	78	10	61	22	40	1	34	1.64
17686067--17686109	10	4.5	10	85	2	54	23	41	2	32	1.67
17688379--17688435	24	2.4	24	91	5	89	22	29	19	28	1.98
17688396--17688437	12	3.5	12	75	12	50	19	28	26	26	1.98
17690724--17690750	12	2.2	12	100	0	54	0	0	11	88	0.50
17692693--17692789	40	2.4	41	83	10	128	32	7	13	46	1.70
17692693--17692779	20	4.3	20	77	10	97	31	8	14	45	1.74
17696459--17697074	318	1.9	318	98	0	1196	31	17	18	32	1.94
17704929--17704976	13	3.4	14	85	8	53	33	0	4	62	1.14
17705645--17705696	21	2.5	21	80	0	59	32	44	0	23	1.54
17705636--17705682	7	6.7	7	90	0	58	29	44	0	25	1.54
17705645--17705678	7	4.9	7	96	0	59	29	52	0	17	1.45
17705863--17705903	21	2.0	21	90	0	64	29	46	0	24	1.53
17706360--17706475	41	2.8	40	79	6	135	26	29	21	22	1.99
17707550--17707681	44	3.0	44	86	0	192	42	11	16	29	1.83
17718395--17718446	25	2.1	24	82	10	61	19	23	17	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17734358--17734399	21	1.9	22	85	9	59	30	2	16	50	1.58
17739658--17739751	44	2.1	45	92	5	156	36	26	4	32	1.76
17739733--17739800	16	4.2	16	92	0	109	27	25	5	41	1.78
17740605--17740655	16	3.2	16	91	2	77	29	0	35	35	1.58
17745466--17745493	13	2.2	13	100	0	56	64	21	14	0	1.29
17747474--17747549	3	25.3	3	86	0	89	32	3	3	59	1.34
17747617--17747655	3	13.3	3	94	5	71	30	0	0	69	0.89
17747510--17747722	106	2.0	107	98	0	410	34	11	8	45	1.70
17749051--17749095	17	2.6	17	100	0	90	42	6	22	28	1.79
17752220--17752357	74	1.9	74	93	0	240	34	10	18	36	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136