genome.fa.s10.2.7.7.80.10.50.1000.55.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  55  of  136  ( 16211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18132261--18132335	27	2.7	27	79	6	71	29	20	21	29	1.98
18135561--18135789	50	4.5	49	82	6	192	22	27	21	27	1.99
18135597--18135794	50	3.8	50	85	4	243	22	28	21	27	1.99
18140006--18140233	123	1.9	123	90	1	368	27	17	18	35	1.94
18140251--18140279	13	2.1	14	93	6	51	68	13	6	10	1.37
18158204--18158245	21	2.0	21	95	0	75	21	19	16	42	1.89
18159199--18159379	100	1.8	100	91	2	301	39	4	12	42	1.65
18159523--18159548	5	5.2	5	100	0	52	42	19	19	19	1.90
18161009--18161039	9	3.4	9	90	0	53	38	22	12	25	1.90
18161445--18161469	13	1.9	13	100	0	50	32	0	0	68	0.90
18163367--18163417	27	1.9	26	96	4	93	13	23	33	29	1.93
18163289--18163596	103	3.0	102	95	1	562	19	18	28	33	1.96
18163497--18163672	76	2.3	76	99	0	343	19	18	27	34	1.96
18180259--18180313	25	2.1	27	83	6	69	40	9	3	47	1.53
18182290--18182421	65	2.0	65	82	8	162	28	5	14	52	1.63
18186952--18186986	18	1.9	18	88	0	52	22	28	5	42	1.76
18186959--18187009	21	2.4	21	83	0	57	21	33	7	37	1.82
18188205--18188251	22	2.1	22	100	0	94	38	19	17	25	1.92
18198468--18198512	16	2.8	16	82	0	54	28	0	8	62	1.25
18202635--18202740	38	2.8	37	79	10	108	29	19	13	37	1.90
18202843--18202938	40	2.4	40	83	0	111	18	21	21	37	1.94
18202843--18202938	20	4.8	20	61	0	57	18	21	21	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18202881--18202976	40	2.4	40	92	0	156	18	20	19	40	1.91
18208156--18208199	18	2.4	18	76	0	52	50	0	34	15	1.45
18210015--18210111	39	2.5	38	88	1	131	50	8	4	37	1.51
18214318--18215188	434	2.0	434	100	0	1742	32	12	16	38	1.87
18215965--18216014	17	3.0	17	85	2	75	72	0	12	16	1.13
18216475--18216631	78	2.0	78	100	0	314	42	6	8	42	1.61
18229552--18229602	24	2.1	24	82	7	59	52	5	7	33	1.54
18237118--18237197	28	2.9	28	90	0	124	27	23	25	23	2.00
18241583--18241632	25	2.0	25	100	0	100	20	12	8	60	1.57
18242884--18242927	22	2.0	22	90	0	70	36	13	18	31	1.90
18243195--18243261	34	2.0	34	100	0	134	20	26	25	26	1.99
18244864--18244914	20	2.5	20	83	0	66	11	33	17	37	1.86
18249552--18249621	16	4.4	16	87	7	106	37	2	32	27	1.72
18249603--18249695	44	2.1	46	93	4	163	27	5	31	35	1.80
18249603--18249708	39	2.5	44	85	11	141	29	4	32	33	1.78
18249922--18249956	18	2.0	17	88	5	52	54	0	0	45	0.99
18249948--18249977	15	1.9	16	93	6	53	50	6	0	43	1.28
18255090--18255140	25	2.0	26	92	3	86	33	25	25	15	1.95
18256262--18256332	35	2.0	35	84	10	92	52	9	30	7	1.61
18264762--18264806	22	2.0	22	100	0	90	28	17	17	35	1.93
18267849--18267884	18	2.1	18	89	5	56	16	33	11	38	1.84
18268853--18268905	26	2.0	26	88	0	79	39	20	18	20	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18270036--18270069	17	2.0	17	100	0	68	23	11	35	29	1.90
18269940--18270145	106	1.9	106	98	0	394	41	14	24	19	1.88
18274383--18274426	20	2.2	20	87	0	61	9	36	20	34	1.84
18276754--18276804	25	2.0	26	84	3	68	43	11	7	37	1.71
18276912--18276966	16	3.4	16	73	9	58	43	5	1	49	1.36
18276943--18277013	21	3.1	23	69	18	58	53	2	0	43	1.15
18279275--18279312	19	2.0	19	100	0	76	31	0	26	42	1.56
18289227--18289297	31	2.3	31	100	0	142	50	23	8	16	1.73
18291945--18292238	27	10.9	27	82	3	297	43	19	16	21	1.88
18291945--18292239	54	5.5	54	83	2	344	43	18	16	21	1.88
18291945--18292238	81	3.6	81	86	5	371	43	19	16	21	1.88
18292478--18292552	26	2.9	26	71	13	73	18	24	24	33	1.97
18292654--18292829	28	6.4	28	84	5	234	22	24	23	29	1.99
18292677--18292829	83	1.9	82	88	4	236	21	24	24	29	1.99
18294007--18294037	16	1.9	16	93	0	53	74	9	6	9	1.23
18294364--18294446	28	3.0	28	87	1	114	26	10	26	36	1.89
18294364--18294458	28	3.4	28	85	2	93	23	12	28	35	1.91
18297430--18297571	29	4.9	29	84	3	169	36	14	28	20	1.91
18297422--18297571	59	2.6	58	82	5	185	36	14	28	21	1.93
18301710--18301745	18	2.0	18	88	0	54	61	0	33	5	1.19
18310634--18310688	3	18.3	3	100	0	110	65	0	0	34	0.93
18310687--18310714	3	9.3	3	100	0	56	35	0	0	64	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18318095--18318162	34	2.0	34	85	5	93	30	23	25	20	1.98
18321880--18321934	26	2.1	26	82	0	65	40	7	5	47	1.54
18322534--18322925	196	2.0	195	97	0	739	44	11	10	32	1.75
18324894--18325153	128	2.0	129	99	0	513	37	19	19	24	1.94
18327488--18327623	43	3.2	43	85	2	175	33	30	16	19	1.93
18333383--18333566	14	12.9	14	71	15	117	47	32	1	19	1.57
18333382--18333522	7	19.7	7	72	12	65	48	33	0	18	1.49
18333473--18333514	22	2.0	21	90	4	66	50	33	0	16	1.46
18333383--18333566	86	2.1	86	79	13	193	47	32	1	19	1.57
18333758--18334104	114	3.0	113	89	2	498	26	27	21	24	1.99
18335607--18335635	2	14.5	2	100	0	58	0	48	0	51	1.00
18337329--18337360	17	1.9	17	93	6	57	53	3	0	43	1.16
18337318--18337407	43	2.0	45	85	10	123	45	3	8	42	1.52
18337318--18337407	46	2.0	43	85	10	119	45	3	8	42	1.52
18339305--18339385	42	1.9	42	85	5	110	16	34	25	23	1.95
18339457--18339525	36	1.9	36	85	5	95	13	34	28	23	1.92
18346280--18346402	62	2.0	62	83	3	158	28	24	18	28	1.98
18347010--18347038	10	2.9	10	100	0	58	82	0	10	6	0.83
18352336--18352622	143	2.0	144	99	0	567	32	14	23	28	1.94
18358722--18358807	27	3.2	27	84	0	118	26	20	13	38	1.91
18361800--18361835	8	4.5	8	89	0	54	50	2	2	44	1.31
18362370--18362401	16	2.0	16	100	0	64	43	12	6	37	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18364995--18365042	5	9.4	5	80	13	53	39	14	22	22	1.91
18376958--18377242	40	7.2	40	78	6	256	21	27	15	36	1.93
18376958--18377059	20	5.1	20	67	9	73	17	31	18	32	1.94
18376958--18377232	80	3.5	80	82	1	284	20	27	14	37	1.92
18376957--18377217	120	2.2	120	82	6	305	20	28	14	36	1.92
18387505--18387871	40	9.2	40	82	3	380	19	28	16	35	1.94
18387505--18387862	81	4.5	80	85	2	452	19	28	17	35	1.94
18388647--18388671	11	2.3	11	100	0	50	60	8	8	24	1.52
18389765--18389825	25	2.4	25	77	0	68	26	27	18	27	1.98
18394459--18394643	95	2.0	94	81	1	217	34	22	18	24	1.96
18402346--18402456	57	2.0	56	85	8	154	46	6	15	31	1.70
18402435--18402465	7	4.6	7	96	4	55	77	0	9	12	0.99
18402435--18402486	14	4.0	13	74	18	54	73	3	11	11	1.23
18402433--18402483	26	2.0	26	84	7	68	72	3	11	11	1.25
18408646--18408696	23	2.2	23	89	6	77	29	5	19	45	1.74
18409952--18409977	11	2.4	11	100	0	52	0	7	0	92	0.39
18410245--18410287	19	2.2	20	84	12	63	32	20	0	46	1.51
18410979--18411101	22	5.4	25	76	17	99	40	17	23	18	1.91
18415977--18416088	39	2.9	39	77	2	120	31	22	21	25	1.98
18419267--18419318	26	2.0	26	84	0	68	34	21	25	19	1.96
18419312--18419376	22	3.0	22	77	4	60	43	18	21	16	1.88
18419396--18419602	32	6.5	32	79	1	191	36	22	21	18	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18419396--18419605	64	3.3	63	76	7	226	36	22	21	18	1.95
18419396--18419602	96	2.2	96	80	3	229	36	22	21	18	1.95
18419646--18419709	27	2.4	27	84	7	78	29	25	25	20	1.99
18419774--18419832	24	2.5	23	83	8	82	47	25	6	20	1.74
18419896--18420061	27	6.2	27	78	4	165	27	18	16	37	1.92
18419896--18420061	54	3.1	54	81	0	190	27	18	16	37	1.92
18426401--18426454	27	2.0	27	100	0	108	25	11	22	40	1.87
18434333--18434362	13	2.2	14	94	5	53	83	0	16	0	0.65
18442959--18442996	19	2.0	19	85	10	51	21	42	0	36	1.53
18444836--18444874	19	2.0	21	85	10	55	66	7	10	15	1.43

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136