genome.fa.s10.2.7.7.80.10.50.1000.122.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  122  of  136  ( 16211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41507443--41507588	75	2.1	68	87	11	206	40	4	8	45	1.56
41507524--41507562	16	2.4	16	91	0	60	35	0	7	56	1.28
41507799--41507865	20	3.4	20	91	2	100	67	5	5	20	1.34
41516188--41516223	2	17.5	2	88	5	54	47	5	0	47	1.25
41516602--41516627	5	5.2	5	100	0	52	42	19	19	19	1.90
41516717--41516742	5	5.2	5	100	0	52	38	19	19	23	1.93
41516691--41516742	26	2.0	26	81	7	61	34	15	26	23	1.94
41517557--41517593	9	4.1	9	92	0	65	29	10	13	45	1.77
41517830--41517927	41	2.4	41	96	0	178	26	20	22	30	1.98
41523373--41523401	14	2.1	14	100	0	58	13	20	27	37	1.91
41524889--41524935	19	2.5	20	79	10	53	36	25	8	29	1.86
41526796--41526822	14	1.9	14	100	0	54	62	0	7	29	1.22
41526814--41526856	13	3.6	13	76	23	58	44	0	4	51	1.22
41526813--41526856	22	2.0	22	100	0	88	45	0	4	50	1.22
41531417--41531470	28	1.9	28	84	0	72	42	7	7	42	1.61
41542206--41542230	13	1.9	13	100	0	50	24	8	28	40	1.83
41543179--41543204	11	2.4	11	100	0	52	50	30	11	7	1.67
41543209--41543257	20	2.5	19	80	6	62	65	6	14	14	1.45
41551336--41551363	13	2.2	13	100	0	56	39	7	21	32	1.80
41554273--41554298	3	8.7	3	100	0	52	30	0	0	69	0.89
41569435--41569471	18	2.1	18	100	0	74	21	24	16	37	1.93
41573917--41573951	17	2.0	18	88	5	54	17	11	5	65	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41586305--41586340	12	2.8	13	87	8	56	66	0	5	27	1.13
41586435--41586475	3	13.7	3	94	0	73	34	0	2	63	1.08
41594945--41595080	3	45.7	3	95	1	229	63	0	2	33	1.09
41596058--41596112	28	2.0	28	86	10	78	61	3	1	32	1.24
41612317--41612352	18	2.1	17	90	10	56	58	16	0	25	1.38
41612585--41612628	22	2.0	21	86	4	61	47	0	0	52	1.00
41620980--41621023	6	7.2	6	82	14	54	81	0	13	4	0.83
41625428--41625484	20	2.9	20	81	2	62	47	14	1	36	1.54
41627705--41627743	19	2.1	19	85	0	51	38	2	0	58	1.12
41636477--41636502	7	3.7	7	100	0	52	15	11	0	73	1.11
41637739--41637781	20	2.1	21	86	4	61	41	0	0	58	0.98
41647097--41647175	9	8.8	9	81	4	88	36	18	11	32	1.87
41647090--41647175	18	4.8	18	85	0	100	38	18	10	32	1.85
41647090--41647175	27	3.2	27	84	0	109	38	18	10	32	1.85
41647291--41647325	13	2.7	13	95	0	61	11	0	45	42	1.40
41653021--41653092	35	2.1	35	100	0	144	41	11	8	38	1.71
41655337--41655370	13	2.8	12	86	4	50	70	2	23	2	1.15
41674930--41675773	62	13.6	62	99	0	1634	69	9	10	11	1.38
41676075--41676124	15	3.3	15	83	8	57	8	10	44	38	1.68
41676527--41676731	107	1.9	107	89	4	315	39	4	20	36	1.74
41677767--41677809	3	14.3	3	100	0	86	0	0	32	67	0.91
41681143--41681219	2	38.5	2	100	0	154	50	0	0	49	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41701016--41701214	99	2.0	99	96	0	362	26	16	17	39	1.90
41704651--41704703	19	2.7	20	85	5	63	28	0	3	67	1.07
41712037--41712327	145	2.0	146	99	0	575	40	6	4	47	1.51
41712544--41712596	22	2.4	21	78	6	52	69	1	7	20	1.22
41716327--41716367	11	3.7	11	80	0	55	60	9	9	19	1.55
41717300--41717353	28	1.9	28	85	7	74	37	5	11	46	1.63
41717742--41717806	2	33.0	2	87	9	98	50	0	1	47	1.10
41721969--41722030	12	5.2	12	96	0	88	8	35	14	41	1.75
41722019--41722059	21	2.0	21	85	0	55	4	46	14	34	1.66
41728574--41728614	13	2.8	15	85	14	59	34	0	19	46	1.50
41728573--41728651	16	5.0	16	75	13	74	34	1	17	46	1.56
41728720--41728774	25	2.3	24	79	14	60	52	3	5	38	1.42
41733283--41733350	15	4.9	14	71	16	52	41	35	0	23	1.55
41733286--41733323	15	2.5	15	86	0	58	36	42	0	21	1.53
41733712--41733910	41	4.9	40	72	4	137	34	23	24	18	1.96
41733751--41733908	82	1.9	82	85	0	217	35	23	23	17	1.95
41734459--41734535	29	2.6	29	83	4	91	48	14	12	24	1.79
41742042--41742087	15	3.1	14	84	9	56	34	15	2	47	1.57
41747789--41748110	159	2.0	160	99	0	637	38	6	7	47	1.59
41750328--41750357	6	4.8	6	95	4	51	66	0	0	33	0.92
41751647--41751690	19	2.3	19	88	0	61	56	27	2	13	1.49
41753975--41754008	13	2.5	14	85	9	52	14	2	58	23	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41754123--41754179	30	1.9	30	96	3	107	54	0	8	36	1.32
41754909--41754950	19	2.2	19	87	8	59	76	7	11	4	1.15
41763239--41763282	20	2.2	20	87	0	61	77	2	0	20	0.88
41766086--41766162	19	3.9	19	93	3	127	37	11	15	35	1.84
41766163--41767632	98	15.0	98	100	0	2940	28	11	25	34	1.90
41771266--41771294	13	2.2	13	100	0	58	86	0	13	0	0.58
41771267--41771310	11	3.8	11	90	6	61	84	0	13	2	0.73
41772308--41772899	44	13.4	45	76	4	544	27	16	26	29	1.97
41772306--41772895	132	4.5	133	91	1	970	27	16	26	29	1.97
41772306--41772899	265	2.2	265	99	0	1170	27	16	26	29	1.97
41773062--41773255	44	4.4	44	67	14	139	28	16	24	29	1.97
41772907--41773361	132	3.4	132	90	1	698	27	18	23	30	1.97
41773590--41773678	19	4.6	19	91	5	151	37	12	15	34	1.85
41773590--41773678	40	2.3	38	94	3	151	37	12	15	34	1.85
41774531--41774555	9	2.8	9	100	0	50	24	0	8	68	1.16
41774832--41775024	97	2.0	97	91	2	316	30	9	23	36	1.87
41787938--41787993	19	2.8	20	82	12	71	58	0	5	35	1.21
41787938--41787998	21	3.1	19	73	17	52	59	0	4	36	1.19
41787990--41788055	29	2.3	28	76	7	69	68	3	6	22	1.26
41787930--41788190	134	1.9	136	87	6	386	62	2	5	29	1.30
41788069--41788127	20	3.0	20	76	14	59	59	0	5	35	1.20
41794400--41794447	20	2.6	18	78	21	55	4	16	6	72	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41800556--41800580	3	8.3	3	100	0	50	36	0	32	32	1.58
41802498--41802548	25	2.0	25	100	0	102	27	29	11	31	1.92
41804766--41804790	11	2.3	11	100	0	50	40	8	16	36	1.77
41806969--41807049	17	4.6	17	72	20	69	38	3	2	55	1.31
41807641--41807666	7	3.7	7	100	0	52	26	0	15	57	1.38
41808317--41808356	18	2.2	18	86	0	53	17	30	7	45	1.76
41808898--41808971	27	2.6	27	89	8	103	43	37	0	18	1.51
41808953--41809002	26	1.9	26	95	0	91	36	44	0	20	1.52
41808898--41809007	14	7.9	14	72	17	86	40	40	0	20	1.52
41808955--41809016	7	9.1	7	84	7	67	38	41	1	17	1.59
41809020--41809076	22	2.6	22	86	10	82	47	21	1	29	1.61
41810425--41811095	335	2.0	335	93	0	1137	25	24	21	28	1.99
41812455--41812771	125	2.5	124	87	4	440	29	22	16	31	1.96
41812896--41812936	21	1.9	22	85	5	57	53	31	0	14	1.41
41816425--41816469	9	4.8	9	78	10	54	26	0	2	71	0.98
41816410--41816468	29	2.0	30	90	9	95	28	0	3	67	1.06
41816484--41816526	20	2.2	20	87	4	61	39	2	4	53	1.34
41816462--41816531	20	3.3	20	76	8	59	38	1	4	55	1.28
41819770--41819804	18	1.9	18	88	0	52	14	0	5	80	0.89
41822251--41822725	237	2.0	237	96	0	880	38	15	16	29	1.90
41823865--41823904	15	2.5	16	88	8	55	20	5	5	70	1.26
41829176--41829222	16	2.9	16	83	0	58	72	0	12	14	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41834458--41834594	41	3.4	41	85	3	152	40	17	24	16	1.90
41834679--41834721	21	2.0	21	86	8	61	34	30	0	34	1.58
41834747--41834820	27	2.7	27	87	0	112	12	40	18	28	1.87
41835866--41835909	22	2.0	22	82	8	54	27	2	11	59	1.44
41837192--41837235	22	2.0	22	82	8	54	27	2	9	61	1.38
41839573--41839639	9	7.7	9	78	9	50	52	14	0	32	1.43
41840881--41840912	6	5.7	6	89	10	50	68	0	0	31	0.90
41842727--41842759	17	1.9	17	93	0	57	39	6	0	54	1.25
41843644--41843735	23	3.9	24	73	12	75	38	18	16	27	1.92
41844318--41844555	28	8.5	28	98	0	449	30	25	11	32	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136