genome.fa.s10.2.7.7.80.10.50.1000.114.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  114  of  136  ( 16211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38515829--38515910	31	2.8	28	81	9	92	43	10	10	34	1.75
38522477--38522522	21	2.2	21	88	0	65	26	23	34	15	1.94
38523691--38523735	15	3.0	15	93	0	72	40	15	8	35	1.79
38524303--38524343	21	2.0	21	86	9	59	39	12	9	39	1.76
38538972--38539036	29	2.2	31	83	5	80	46	10	7	35	1.68
38543840--38543879	14	2.9	14	84	0	62	45	5	0	50	1.23
38543984--38544040	20	2.9	20	81	2	71	35	7	0	57	1.26
38543984--38544040	19	2.9	20	82	7	64	35	7	0	57	1.26
38544848--38544888	21	2.0	21	95	0	73	29	14	0	56	1.39
38549195--38549381	29	6.4	30	83	6	183	22	13	25	37	1.92
38549195--38549381	88	2.1	87	82	7	227	22	13	25	37	1.92
38567878--38568235	184	1.9	184	92	2	603	28	28	18	25	1.98
38570358--38570410	18	2.7	20	77	14	56	32	16	3	47	1.65
38570372--38570419	18	2.6	19	77	9	55	37	16	0	45	1.48
38573408--38573445	10	3.5	11	86	13	53	63	2	0	34	1.09
38578799--38578888	40	2.2	41	82	3	112	31	6	20	42	1.77
38579092--38579192	45	2.2	45	91	0	157	20	17	19	41	1.90
38579858--38579901	21	2.1	21	100	0	88	36	18	4	40	1.71
38583390--38583437	22	2.2	22	100	0	96	25	33	0	41	1.55
38583412--38583524	51	2.2	51	93	0	190	28	28	1	41	1.66
38585057--38585091	18	1.9	18	88	0	52	25	34	8	31	1.86
38585586--38586216	29	21.8	29	99	0	1228	45	27	0	27	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38585586--38586319	58	12.9	58	93	4	1266	45	26	0	27	1.54
38585586--38586319	87	8.6	87	93	4	1266	45	26	0	27	1.54
38586133--38586317	101	1.8	101	94	2	327	47	23	0	28	1.52
38586238--38586319	29	2.8	29	98	0	155	47	26	0	25	1.52
38586314--38586469	55	2.8	55	90	2	242	40	12	5	41	1.65
38586453--38586477	10	2.5	10	100	0	50	44	8	0	48	1.32
38586396--38586621	121	1.9	122	96	0	418	40	8	8	42	1.67
38586565--38586674	53	2.1	53	94	0	193	30	8	14	47	1.73
38589627--38589974	123	2.8	123	92	2	567	33	21	15	29	1.95
38596174--38596241	20	3.4	19	78	8	64	48	13	5	32	1.66
38600316--38600352	18	2.1	18	94	0	65	54	0	18	27	1.44
38610116--38610358	131	1.9	131	83	3	319	28	19	4	47	1.69
38619444--38619489	23	2.0	23	95	0	83	34	15	13	36	1.86
38621375--38621418	17	2.6	17	96	0	79	13	13	40	31	1.84
38629150--38629205	27	2.1	27	90	6	87	28	21	12	37	1.90
38636616--38637118	165	3.1	164	90	2	794	41	18	9	30	1.82
38638491--38638987	248	2.0	249	99	0	987	30	19	9	39	1.84
38642211--38642240	16	1.9	16	93	6	53	20	13	0	66	1.24
38648524--38648557	5	6.4	5	90	10	50	58	0	41	0	0.98
38650881--38650949	26	2.6	25	73	8	66	37	13	10	39	1.78
38653055--38653094	21	1.9	21	94	0	71	17	12	15	55	1.70
38668662--38668711	20	2.4	21	86	3	66	32	2	6	60	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38675086--38675139	2	27.0	2	100	0	108	50	50	0	0	1.00
38676602--38676631	14	2.1	14	93	0	51	26	16	6	50	1.70
38689666--38689727	23	2.7	23	79	0	79	32	17	30	19	1.95
38707951--38708019	31	2.2	31	82	10	79	28	10	8	52	1.65
38711734--38711765	7	4.6	7	96	0	55	18	0	37	43	1.51
38711896--38712365	261	1.8	261	97	0	897	31	16	22	28	1.96
38713214--38713242	14	2.1	14	100	0	58	20	51	13	13	1.75
38715921--38715963	18	2.4	18	88	0	59	46	6	25	20	1.76
38717716--38717745	15	2.1	14	93	6	51	76	0	0	23	0.78
38717724--38717784	29	2.2	26	82	8	68	54	4	3	37	1.39
38718108--38718174	31	2.2	29	86	5	89	38	0	4	56	1.19
38718125--38718183	29	2.1	29	81	9	68	35	0	6	57	1.25
38718134--38718191	30	2.0	29	86	3	80	36	0	5	58	1.20
38719357--38719382	5	5.2	5	100	0	52	38	19	19	23	1.93
38722012--38722074	16	3.9	16	82	0	72	33	22	17	26	1.96
38722157--38722207	24	2.1	24	85	0	66	37	23	11	27	1.90
38726515--38726550	3	12.0	3	100	0	72	33	0	0	66	0.92
38726419--38726679	129	2.0	130	99	0	515	37	6	14	40	1.73
38726644--38726701	3	19.3	3	100	0	116	32	0	0	67	0.91
38735575--38735649	3	25.0	3	97	0	141	32	0	1	66	1.00
38737547--38737605	24	2.5	24	88	0	91	30	20	16	32	1.95
38737469--38737731	130	2.0	129	85	2	357	36	18	15	30	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38744540--38744587	17	2.7	17	83	6	51	72	2	8	16	1.18
38744553--38744601	19	2.6	19	80	3	55	67	0	12	20	1.22
38752347--38752427	26	3.2	25	65	28	62	24	12	28	34	1.92
38752239--38752427	51	3.8	49	74	6	157	24	15	26	32	1.96
38755165--38755363	83	2.4	81	80	7	204	42	12	13	31	1.81
38755372--38755680	78	4.0	78	90	0	467	37	11	17	33	1.86
38755372--38755680	155	2.0	156	89	1	469	37	11	17	33	1.86
38758178--38758219	22	1.9	21	85	9	57	52	0	4	42	1.22
38765666--38765703	17	2.3	16	95	4	67	50	5	0	44	1.24
38766994--38767099	50	2.1	50	98	0	203	35	18	19	25	1.95
38769057--38769154	13	7.2	14	70	21	75	45	4	14	35	1.64
38769113--38769178	27	2.5	25	79	20	64	39	4	15	40	1.67
38770121--38770164	15	2.9	15	89	0	61	63	18	13	4	1.46
38778187--38778406	44	5.0	44	100	0	440	45	9	13	31	1.75
38800807--38800839	17	1.9	18	88	11	52	42	15	0	42	1.46
38804070--38804521	224	2.0	225	99	0	888	44	14	13	27	1.83
38816085--38816145	32	1.9	31	87	9	88	42	8	8	40	1.64
38817709--38817779	32	2.3	31	85	2	88	42	5	8	43	1.58
38818665--38818758	43	2.2	43	82	5	109	55	1	10	32	1.41
38819702--38819754	22	2.4	22	83	0	70	30	13	26	30	1.94
38821912--38821969	26	2.3	25	81	3	71	39	22	20	17	1.92
38821926--38821978	25	2.1	26	82	10	65	39	20	24	15	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38824007--38824197	58	3.4	57	76	13	162	35	22	15	27	1.94
38824050--38824213	84	1.9	83	80	9	188	34	21	14	29	1.92
38824023--38824215	29	6.8	29	74	6	128	35	20	15	28	1.93
38830905--38831061	45	3.5	44	86	5	197	36	28	13	22	1.92
38842164--38842261	33	3.0	33	98	0	187	22	27	19	30	1.98
38843131--38843169	15	2.6	14	80	11	51	12	28	35	23	1.91
38845707--38845762	20	2.8	21	76	17	73	35	10	12	41	1.78
38856849--38856902	21	2.6	21	84	0	72	37	24	7	31	1.83
38880405--38880882	27	17.7	27	83	3	525	35	18	21	24	1.96
38881073--38881126	26	2.1	26	92	0	90	16	22	25	35	1.95
38881073--38881138	26	2.5	26	82	0	69	18	22	25	33	1.97
38881129--38881313	32	5.8	32	71	11	110	19	18	24	37	1.94
38881125--38881337	64	3.3	64	76	8	191	18	19	24	37	1.94
38881197--38881337	32	4.4	32	79	0	138	17	19	26	36	1.94
38885850--38885901	28	1.9	26	84	7	68	51	3	17	26	1.62
38889548--38889578	15	2.1	15	94	5	55	6	12	0	80	0.89
38891122--38891170	24	2.0	24	92	0	80	28	14	26	30	1.95
38892532--38892571	21	1.9	21	84	0	53	25	7	7	60	1.50
38899924--38899977	22	2.5	21	75	6	54	55	1	0	42	1.10
38920706--38920793	29	3.0	29	90	6	142	23	9	32	34	1.86
38920879--38920941	24	2.6	24	84	0	81	36	3	9	50	1.51
38925188--38925225	15	2.5	15	91	0	58	63	0	10	26	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38928007--38928031	2	12.5	2	100	0	50	0	0	48	52	1.00
38928693--38928849	40	3.8	41	80	5	156	38	14	21	26	1.91
38930431--38930485	25	2.2	25	83	3	65	67	12	9	10	1.43
38933486--38933510	11	2.3	11	100	0	50	48	8	20	24	1.76
38934453--38934601	39	4.0	40	68	17	102	40	12	21	25	1.88
38934471--38934531	32	1.9	32	89	0	95	39	8	26	26	1.84
38934503--38934601	39	2.5	40	81	1	110	40	12	20	27	1.87
38934738--38934807	26	2.6	27	81	4	88	44	8	22	24	1.81
38934738--38934823	27	3.2	27	80	3	93	43	6	22	27	1.79
38938470--38938592	43	2.8	44	81	3	142	26	13	21	39	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136