genome.fa.s10.2.7.7.80.10.50.1000.112.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  112  of  136  ( 16211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37923238--37923504	84	3.2	82	84	8	308	31	19	23	25	1.98
37923257--37923518	43	6.2	42	84	7	155	32	20	22	25	1.98
37934098--37934213	21	5.4	21	87	3	160	72	10	10	6	1.28
37934098--37934219	7	17.3	7	82	4	138	72	10	9	6	1.26
37934224--37934267	18	2.4	19	84	3	54	56	13	15	13	1.67
37935143--37935568	198	2.2	198	93	1	739	34	19	15	29	1.93
37936745--37936883	74	1.9	74	86	0	197	30	24	17	28	1.97
37936745--37936905	74	2.2	74	83	4	191	32	24	15	27	1.95
37936958--37938000	113	9.2	114	68	14	608	27	20	17	34	1.95
37936960--37938054	227	4.8	226	80	8	1269	28	20	17	34	1.95
37937554--37937643	39	2.3	39	96	0	162	28	18	13	38	1.89
37937238--37938054	451	1.8	452	94	1	1469	28	20	16	33	1.95
37937706--37938054	113	3.1	110	74	9	337	28	20	16	33	1.95
37939306--37939342	18	2.1	18	100	0	74	45	5	16	32	1.70
37941370--37941408	6	6.5	6	93	0	69	17	0	12	69	1.19
37946625--37946661	9	4.1	9	89	0	56	29	10	10	48	1.72
37951325--37951375	24	2.2	22	83	13	59	27	9	13	49	1.74
37954720--37955180	50	9.3	50	70	7	260	25	21	22	31	1.98
37954701--37955180	100	4.8	99	84	3	570	25	20	22	31	1.98
37955199--37955398	44	4.5	45	73	7	133	27	24	19	29	1.98
37955491--37955763	88	3.1	88	81	0	312	23	24	24	27	2.00
37957086--37957134	21	2.3	21	82	3	62	14	12	0	73	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37957101--37957137	15	2.4	17	82	17	53	10	13	0	75	1.04
37957950--37958027	12	6.1	13	75	11	72	15	3	6	74	1.17
37957951--37958027	25	3.1	24	77	7	73	15	3	6	74	1.18
37967019--37967140	30	4.1	30	82	0	145	14	27	26	31	1.95
37968748--37968799	6	8.2	6	79	12	50	78	9	0	11	0.95
37968751--37968799	12	3.8	13	78	15	57	77	10	0	12	0.99
37971534--37971563	12	2.5	12	100	0	60	33	43	16	6	1.74
37978764--37978811	20	2.4	20	82	0	60	20	27	0	52	1.47
37979680--37979756	35	2.2	35	88	4	111	41	32	11	14	1.82
37984013--37984059	24	1.9	24	86	4	67	72	2	0	25	0.96
37984042--37984116	31	2.5	31	93	2	125	62	2	9	25	1.38
37995575--37995604	16	1.9	15	93	6	51	50	0	3	46	1.18
38011644--38011977	171	1.9	172	84	4	442	32	19	10	37	1.86
38012357--38012404	24	2.0	24	91	0	78	29	14	2	54	1.52
38028726--38028994	2	134.5	2	98	0	520	49	0	0	50	1.03
38031612--38031839	127	1.8	126	85	4	291	33	17	16	32	1.92
38033975--38034434	89	5.2	89	89	0	668	23	23	23	28	2.00
38034005--38034225	44	5.0	44	66	14	130	23	23	25	28	2.00
38034029--38034434	45	9.1	45	65	16	191	23	23	23	29	1.99
38046755--38046805	21	2.4	22	86	3	68	56	0	5	37	1.23
38046680--38046894	93	2.3	94	95	3	378	61	2	8	27	1.38
38055241--38055321	41	2.0	41	92	0	135	30	11	14	43	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38059796--38059842	24	2.0	24	82	0	58	21	27	21	29	1.98
38060761--38060803	18	2.3	18	84	11	52	53	0	4	41	1.21
38068918--38069048	6	22.5	6	82	6	135	58	0	19	22	1.40
38068930--38069048	35	3.4	35	89	4	161	57	0	19	22	1.40
38068918--38069048	29	4.5	28	84	8	147	58	0	19	22	1.40
38069711--38069737	4	6.8	4	100	0	54	25	0	22	51	1.48
38069731--38069773	18	2.4	17	77	11	50	46	0	13	39	1.44
38070884--38070954	29	2.6	28	86	6	92	29	14	21	35	1.92
38070998--38071033	19	1.9	19	88	5	56	30	25	22	22	1.99
38071028--38071105	34	2.3	34	86	4	113	28	20	21	29	1.98
38077676--38077716	18	2.3	18	82	0	55	48	12	14	24	1.78
38079883--38079976	42	2.2	42	86	0	134	18	17	17	47	1.82
38079898--38080017	42	2.9	42	83	5	127	20	20	15	44	1.87
38086832--38086941	42	2.6	43	82	2	141	25	16	26	31	1.96
38089176--38089268	27	3.1	27	65	26	71	45	3	6	45	1.45
38089165--38089289	62	2.0	63	98	1	243	44	3	4	47	1.40
38090116--38090170	21	2.6	21	88	0	83	23	9	38	29	1.85
38097970--38098032	21	3.1	20	77	8	65	53	15	26	3	1.57
38097993--38098029	19	1.9	19	88	0	56	51	18	27	2	1.60
38101414--38101443	12	2.5	12	94	0	51	33	6	20	40	1.78
38101723--38101773	22	2.3	23	83	6	61	64	13	7	13	1.48
38101723--38101785	23	2.8	24	79	13	62	61	15	9	12	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38107359--38107388	7	4.1	7	95	4	51	16	0	0	83	0.65
38107976--38108011	18	1.9	19	88	5	56	63	2	2	30	1.22
38110375--38110414	19	2.1	19	95	0	71	27	15	12	45	1.82
38112773--38112802	16	1.9	15	93	6	51	50	0	0	50	1.00
38113441--38113531	35	2.6	36	80	7	105	50	1	4	43	1.29
38113544--38113622	6	13.3	6	68	21	51	75	2	21	0	0.91
38113571--38113629	14	3.9	16	78	13	54	74	3	22	0	0.96
38113596--38113622	10	2.7	10	100	0	54	88	0	11	0	0.50
38113563--38113629	4	17.5	4	75	9	52	73	2	23	0	0.97
38114281--38114338	24	2.4	24	77	16	66	32	0	18	48	1.49
38120277--38120370	4	23.5	4	73	18	63	73	2	21	3	1.08
38120279--38120377	13	7.4	14	71	12	57	71	2	23	3	1.10
38120271--38120367	19	5.1	19	71	13	65	73	2	20	4	1.10
38120491--38120528	17	2.2	17	90	0	58	31	2	13	52	1.54
38125363--38125400	17	2.2	19	86	13	55	42	10	2	44	1.52
38132530--38132851	161	2.0	161	98	0	626	43	13	18	24	1.86
38134038--38134081	11	3.7	12	87	9	63	27	0	0	72	0.85
38135968--38136029	25	2.6	23	75	12	61	38	4	0	56	1.21
38137047--38137100	19	2.8	19	94	0	99	37	9	16	37	1.81
38137036--38137107	38	2.0	36	84	10	94	37	9	16	36	1.82
38144516--38144986	44	10.9	43	68	15	170	30	20	22	26	1.98
38144642--38144983	45	7.8	45	70	13	178	29	21	23	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38145529--38145617	19	4.4	19	72	22	74	39	5	17	37	1.74
38145548--38145594	14	3.4	14	77	16	62	36	4	19	40	1.71
38145541--38145594	27	2.0	27	100	0	108	37	3	18	40	1.69
38145541--38145582	13	3.2	13	75	18	50	38	2	19	40	1.64
38146797--38146855	28	2.1	28	100	0	118	16	18	20	44	1.87
38147207--38147567	180	2.0	181	99	0	715	32	11	17	39	1.84
38147535--38147570	17	2.2	16	90	5	54	25	0	0	75	0.81
38147535--38147568	15	2.1	16	89	10	52	23	0	0	76	0.79
38149021--38149053	15	2.3	15	89	5	50	33	12	12	42	1.79
38151862--38151893	12	2.7	12	100	0	64	75	6	0	18	1.01
38152438--38152624	51	3.7	49	74	5	178	24	17	27	30	1.97
38152630--38152724	45	2.1	45	84	0	127	29	15	22	32	1.95
38155255--38155374	47	2.6	47	77	2	116	30	16	25	28	1.97
38157981--38158116	51	2.7	51	81	2	139	27	17	25	29	1.98
38158583--38158607	10	2.5	10	100	0	50	56	0	8	36	1.29
38162981--38163010	14	2.1	14	93	0	51	53	23	10	13	1.69
38167954--38168134	90	2.0	91	98	1	355	46	5	25	22	1.73
38175561--38175634	30	2.4	32	80	11	82	32	5	16	45	1.70
38175629--38175847	48	4.6	48	89	0	321	29	16	22	30	1.96
38175629--38175863	96	2.5	96	90	0	355	30	16	22	29	1.96
38175825--38175932	41	2.5	42	80	5	119	32	12	22	32	1.92
38195989--38196051	24	2.6	24	97	0	117	31	38	7	22	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38202973--38203075	44	2.3	44	80	3	109	27	21	20	31	1.98
38203232--38203377	72	2.0	72	81	0	166	23	28	15	33	1.94
38203392--38203720	129	2.5	128	89	3	480	27	24	17	30	1.98
38203707--38203917	89	2.4	88	76	9	212	26	23	21	29	1.99
38205270--38205312	11	3.9	11	90	0	68	0	20	0	79	0.74
38205268--38205311	17	2.6	17	85	3	63	0	22	0	77	0.77
38205268--38205312	6	8.0	6	78	14	51	0	22	0	77	0.76
38205275--38205323	22	2.2	22	78	7	55	4	20	0	75	0.96
38205310--38205339	9	3.4	9	95	4	53	16	10	0	73	1.09
38212028--38212381	117	3.0	117	87	0	474	25	19	24	30	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136