genome.fa.s10.2.7.7.80.10.50.1000.102.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  102  of  136  ( 16211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34387340--34387397	24	2.5	22	86	5	71	55	0	1	43	1.10
34388604--34388678	27	2.8	27	76	8	80	30	30	18	20	1.96
34390048--34390072	7	3.6	7	100	0	50	28	16	28	28	1.97
34405898--34405937	20	2.0	20	85	0	53	52	0	2	45	1.14
34406868--34406892	13	1.9	13	100	0	50	0	0	28	72	0.86
34417328--34417361	17	2.0	17	88	0	50	58	0	2	38	1.13
34418421--34418463	19	2.3	18	84	4	50	44	18	9	27	1.80
34426489--34426555	30	2.3	29	79	10	73	56	2	1	38	1.24
34445077--34445244	78	2.2	77	82	10	191	41	2	14	41	1.58
34445809--34445888	31	2.6	31	78	4	81	33	8	15	42	1.77
34447895--34447931	19	1.9	19	94	0	65	56	0	2	40	1.13
34451170--34451204	11	3.1	11	88	8	52	68	2	0	28	1.04
34457946--34457998	13	4.1	13	81	13	65	32	7	24	35	1.84
34457946--34457998	26	2.0	26	85	7	72	32	7	24	35	1.84
34459115--34459141	3	9.0	3	100	0	54	66	0	0	33	0.92
34460272--34460310	13	3.1	13	81	7	53	35	15	10	38	1.81
34477901--34478542	228	2.8	228	83	2	752	21	22	26	30	1.99
34495163--34495232	22	3.2	21	73	15	61	61	4	14	20	1.49
34525361--34525395	19	1.9	17	88	11	52	20	2	11	65	1.37
34526802--34526826	11	2.3	11	100	0	50	48	8	28	16	1.74
34526778--34526877	51	2.0	50	84	7	130	44	3	27	26	1.69
34526837--34526902	11	5.9	11	73	22	50	45	1	28	24	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34526791--34526888	22	4.6	22	67	19	64	44	3	27	24	1.68
34527844--34527922	36	2.1	36	84	9	97	50	8	3	36	1.52
34528736--34528826	32	2.8	32	81	5	112	42	9	9	37	1.71
34554312--34554386	9	8.3	9	68	26	52	57	1	1	40	1.16
34554311--34554410	11	9.5	10	71	17	69	59	1	3	37	1.20
34554305--34554405	21	4.8	20	73	20	64	56	0	2	39	1.21
34554446--34554638	96	2.0	96	94	0	341	34	2	25	37	1.68
34555442--34555516	9	8.3	9	68	26	52	57	1	1	40	1.16
34555441--34555540	11	9.5	10	71	17	69	59	1	3	37	1.20
34555435--34555535	21	4.8	20	73	20	64	56	0	2	39	1.21
34557516--34557580	29	2.2	30	81	10	71	47	1	4	46	1.32
34560066--34560090	12	2.1	12	100	0	50	8	44	0	48	1.32
34565721--34565761	21	2.0	20	85	4	55	34	12	7	46	1.69
34568561--34568587	5	5.4	5	100	0	54	18	0	0	81	0.69
34569742--34569785	23	1.9	23	86	9	63	54	18	11	15	1.70
34572252--34572297	21	2.2	21	100	0	92	41	8	8	41	1.67
34578988--34579046	26	2.2	25	82	14	64	40	1	5	52	1.33
34580747--34580807	22	2.7	22	89	5	86	47	1	1	49	1.21
34580753--34580816	22	2.9	22	80	2	65	50	3	1	45	1.27
34580859--34581015	19	8.4	19	63	24	66	40	4	6	48	1.49
34580869--34581018	44	3.3	44	72	18	153	40	4	6	48	1.50
34580914--34580986	33	2.1	34	87	5	103	36	1	9	52	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34580916--34581028	53	2.2	51	84	9	142	37	2	8	51	1.47
34583777--34583806	7	4.3	7	95	0	51	13	16	30	40	1.87
34584159--34584187	13	2.2	13	100	0	58	27	6	13	51	1.66
34590182--34590231	23	2.2	23	82	7	57	60	6	18	16	1.55
34617242--34617289	18	2.6	18	83	3	60	45	2	0	52	1.12
34617264--34617323	19	3.2	18	76	6	57	41	1	1	55	1.20
34617359--34617531	89	2.0	88	84	1	229	31	8	22	36	1.85
34619578--34619655	24	3.2	24	92	0	129	20	42	17	19	1.90
34621429--34621454	3	8.7	3	100	0	52	65	0	0	34	0.93
34626469--34626567	29	3.5	29	91	5	159	49	1	11	38	1.45
34626811--34626835	13	1.9	13	100	0	50	68	24	0	8	1.16
34638568--34638616	25	2.0	25	91	0	80	24	20	8	46	1.77
34642613--34642640	9	3.1	9	100	0	56	46	10	10	32	1.73
34646558--34646754	98	2.0	99	97	1	378	20	41	21	16	1.90
34646956--34647022	34	2.0	34	96	0	125	10	10	13	65	1.47
34665547--34665584	16	2.4	17	86	8	53	39	0	2	57	1.12
34665913--34665939	2	13.5	2	100	0	54	51	0	0	48	1.00
34676477--34676538	11	5.6	11	75	12	65	54	0	4	40	1.22
34676480--34676546	32	2.1	31	97	2	125	59	0	4	35	1.18
34676521--34676560	15	2.4	18	84	16	59	60	0	0	40	0.97
34676532--34676575	22	2.0	22	86	0	61	70	0	0	29	0.88
34677046--34677091	17	2.5	20	79	17	62	26	0	8	65	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34677239--34677271	11	2.9	12	86	13	52	66	0	0	33	0.92
34677704--34677741	19	2.0	20	84	5	51	42	2	5	50	1.39
34679440--34679573	33	4.1	32	73	7	99	34	14	23	28	1.93
34679440--34679636	105	1.9	101	87	4	286	32	15	23	27	1.95
34679577--34679654	33	2.4	32	78	6	84	30	16	25	26	1.97
34689330--34689363	15	2.3	15	89	0	50	0	47	0	52	1.00
34697026--34697094	32	2.1	33	91	2	113	36	1	7	55	1.37
34697553--34698740	593	2.0	594	99	0	2369	32	19	15	31	1.94
34700181--34700213	16	2.1	16	88	5	50	39	0	3	57	1.14
34705060--34705130	32	2.2	32	84	0	97	30	2	15	50	1.58
34706308--34706347	21	2.0	20	85	5	53	52	0	2	45	1.14
34716293--34716326	17	2.0	17	88	0	50	41	0	0	58	0.98
34717315--34717348	17	1.9	18	94	5	61	47	2	0	50	1.16
34719861--34720022	87	1.9	86	85	3	227	38	21	9	29	1.86
34720358--34720543	88	2.1	88	82	5	225	33	9	20	36	1.85
34721135--34721387	126	2.0	127	99	0	499	28	4	11	55	1.56
34724064--34724115	23	2.2	23	83	10	61	34	1	11	51	1.49
34726367--34726405	19	2.1	19	85	9	53	76	7	0	15	0.99
34726524--34727321	151	5.3	149	89	4	1187	29	11	7	50	1.66
34726524--34727331	303	2.7	303	91	5	1307	30	11	7	50	1.66
34727967--34728023	26	2.2	27	79	17	68	43	1	1	52	1.21
34729297--34729321	4	6.2	4	100	0	50	48	0	28	24	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34733767--34733843	33	2.3	32	82	6	91	35	18	20	25	1.95
34733662--34733888	105	2.2	98	80	9	242	32	14	24	27	1.95
34735305--34735342	20	1.9	20	94	0	67	57	10	15	15	1.64
34735386--34735413	14	2.0	14	100	0	56	42	14	7	35	1.73
34736010--34736078	36	1.9	36	90	0	111	28	23	7	40	1.81
34736541--34736572	14	2.3	14	100	0	64	75	0	0	25	0.81
34736551--34736696	68	2.1	69	96	2	276	47	9	5	36	1.59
34736683--34736733	9	6.1	9	78	17	65	54	11	0	33	1.37
34736692--34736733	16	2.6	16	96	0	75	54	11	0	33	1.37
34736682--34736736	25	2.3	23	90	6	83	54	10	0	34	1.36
34736740--34736781	16	2.6	16	92	0	66	42	7	2	47	1.43
34739112--34739182	34	2.1	34	97	0	133	39	21	9	29	1.85
34745306--34745345	21	2.0	20	85	5	53	60	5	0	35	1.19
34748876--34749034	87	1.8	87	82	5	205	38	13	20	27	1.90
34751618--34751644	6	4.5	6	100	0	54	14	14	51	18	1.76
34752109--34752341	116	2.0	117	99	0	459	42	11	4	41	1.60
34752352--34752401	14	4.0	13	78	12	52	40	0	0	60	0.97
34754402--34754759	176	2.0	177	98	1	709	29	21	12	37	1.90
34757396--34757505	51	2.2	50	95	1	193	30	12	25	31	1.93
34757458--34757541	36	2.3	37	89	2	125	26	14	26	33	1.94
34757408--34757592	87	2.1	87	92	0	307	29	14	24	31	1.94
34757495--34757603	51	2.2	50	93	1	182	33	13	23	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34760193--34760265	30	2.4	30	88	6	112	30	17	26	26	1.98
34762576--34762633	26	2.3	26	82	8	77	13	24	22	39	1.90
34764735--34764785	18	2.7	19	80	11	52	58	0	1	39	1.09
34764718--34764785	19	3.7	18	81	13	68	60	1	1	36	1.15
34765221--34765517	70	4.2	70	100	0	594	33	4	2	59	1.30
34770953--34770991	20	2.0	20	85	10	53	66	0	2	30	1.05
34780746--34780805	29	2.1	29	81	6	68	46	5	3	45	1.41
34780995--34781159	83	2.0	82	85	3	224	32	8	9	49	1.66
34784157--34784187	2	15.5	2	93	0	53	48	0	3	48	1.17
34784613--34784652	21	1.9	21	94	0	71	42	25	0	32	1.55

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136