genome.fa.s10.2.7.7.80.10.50.1000.72.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  72  of  136  ( 16211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23676037--23676072	17	2.0	19	89	10	58	41	27	5	25	1.77
23701234--23701375	43	3.3	43	88	4	189	19	19	30	30	1.96
23701261--23701401	43	3.3	41	79	9	131	22	24	26	26	2.00
23701369--23701529	43	3.7	43	84	3	191	29	31	18	19	1.96
23701344--23701508	86	1.9	86	81	4	199	27	30	20	21	1.98
23701456--23701590	43	3.2	43	83	7	134	26	29	20	22	1.99
23708503--23708550	23	2.1	23	100	0	96	25	16	27	31	1.97
23710216--23710279	3	21.3	3	85	6	85	62	1	4	31	1.25
23710972--23711235	131	2.0	132	99	0	521	45	8	14	31	1.74
23712199--23712262	3	21.3	3	85	6	85	62	1	4	31	1.25
23717501--23717581	40	2.0	40	90	0	126	22	23	19	34	1.96
23721844--23721993	59	2.5	59	83	8	182	44	9	4	42	1.55
23721895--23721932	20	1.9	20	94	0	67	52	10	0	36	1.36
23722329--23722376	11	4.3	11	81	2	51	12	10	4	72	1.24
23722317--23722376	22	2.7	22	84	7	68	11	11	5	71	1.28
23722311--23722376	23	3.0	22	80	8	71	13	10	4	71	1.29
23724640--23724737	26	3.7	25	71	17	74	66	3	8	22	1.33
23728653--23728700	24	2.0	24	100	0	96	33	25	16	25	1.96
23730127--23730169	20	2.1	20	82	4	50	69	9	0	20	1.15
23731852--23731939	13	6.7	13	82	11	99	34	1	6	57	1.32
23731852--23731935	40	2.1	39	86	2	114	33	1	7	58	1.33
23732108--23732139	16	2.0	16	100	0	64	37	6	6	50	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23733070--23733291	115	2.0	112	90	2	345	33	22	13	29	1.93
23734033--23734065	10	3.3	10	87	12	50	48	27	0	24	1.51
23736139--23736187	10	4.8	10	84	2	62	8	0	6	85	0.73
23736139--23736187	25	2.0	24	88	4	71	8	0	6	85	0.73
23736608--23736663	21	2.7	20	78	10	58	28	5	5	60	1.41
23736693--23736782	25	3.5	26	71	10	87	40	6	3	50	1.45
23748384--23748743	132	2.7	133	86	3	528	29	18	23	28	1.98
23748387--23748768	133	2.9	132	84	4	518	28	19	23	28	1.98
23748332--23748825	89	5.6	89	76	7	414	30	19	23	27	1.98
23748384--23748823	133	3.3	132	82	2	490	29	19	23	27	1.98
23748516--23748930	222	1.9	223	82	2	530	29	18	22	28	1.98
23750174--23750207	5	6.8	5	86	0	50	14	0	5	79	0.91
23750639--23750694	21	2.7	20	78	10	58	28	5	5	60	1.41
23750724--23750813	25	3.5	26	71	10	87	40	6	3	50	1.45
23753905--23753929	8	3.1	8	100	0	50	64	36	0	0	0.94
23757283--23757334	16	3.0	16	81	13	59	42	0	32	25	1.55
23757712--23757748	9	4.1	9	89	0	56	29	13	10	45	1.77
23757801--23757831	9	3.4	9	100	0	62	41	22	12	22	1.88
23758745--23758790	9	5.1	9	94	0	83	45	13	10	30	1.77
23759624--23759649	5	5.2	5	100	0	52	19	19	19	42	1.90
23759923--23759966	23	1.9	23	86	9	63	59	0	2	38	1.10
23764055--23764116	21	2.8	21	80	11	63	41	8	0	50	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23765153--23765185	1	33.0	1	100	0	66	100	0	0	0	0.00
23769774--23770468	370	1.9	371	96	0	1275	40	12	19	27	1.87
23774517--23774575	22	2.7	22	84	5	75	79	0	20	0	0.73
23774519--23774577	20	3.1	18	80	11	64	77	0	22	0	0.76
23774508--23774574	26	2.6	26	77	13	75	82	1	16	0	0.75
23775821--23776121	44	6.8	44	67	17	142	30	18	23	26	1.98
23775956--23776133	88	2.0	88	79	8	193	30	17	23	28	1.97
23775840--23776121	132	2.1	132	91	0	447	31	17	24	26	1.97
23776159--23776318	50	3.2	50	73	3	178	32	20	20	26	1.97
23777564--23778278	50	14.3	49	70	5	421	31	22	21	24	1.98
23777560--23778278	100	7.2	100	92	0	1089	31	23	21	24	1.98
23780053--23780091	3	13.0	3	100	0	78	33	0	0	66	0.92
23780460--23780492	17	1.9	17	93	0	57	33	3	9	54	1.47
23780616--23780696	35	2.3	36	85	8	105	37	7	2	53	1.43
23780647--23780785	51	2.8	51	75	15	137	33	10	2	53	1.49
23785067--23785165	51	1.9	51	97	0	189	50	19	5	25	1.67
23791144--23791191	19	2.5	19	80	12	53	43	4	0	52	1.20
23806645--23806670	11	2.4	11	100	0	52	69	15	0	15	1.20
23825218--23825358	64	2.2	64	80	2	158	19	30	21	27	1.98
23825240--23825403	64	2.6	64	75	5	154	25	25	21	27	2.00
23827230--23827275	15	3.1	15	80	0	65	30	21	19	28	1.98
23830862--23830895	15	2.3	15	100	0	68	35	14	5	44	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23831081--23831131	20	2.3	23	83	9	63	74	7	1	15	1.13
23831081--23831131	10	4.8	10	76	21	50	74	7	1	15	1.13
23831242--23831319	27	2.9	27	92	0	120	21	23	37	17	1.94
23831246--23831335	27	3.3	27	85	3	92	22	24	36	16	1.94
23838088--23838282	4	44.8	4	71	22	87	1	29	0	69	0.99
23838082--23838254	10	17.5	10	68	23	75	0	29	0	69	0.97
23838071--23838231	45	3.6	44	74	17	127	0	29	0	68	0.98
23838049--23838252	42	4.9	42	84	9	260	0	29	0	69	0.96
23838054--23838252	82	2.4	83	86	6	275	0	30	0	68	0.97
23838051--23838283	42	5.8	41	82	7	239	0	29	0	69	0.98
23838048--23838283	82	2.9	81	82	10	270	0	30	0	68	0.99
23838478--23838503	12	2.2	12	100	0	52	0	0	7	92	0.39
23841450--23841493	3	14.7	3	100	0	88	31	0	0	68	0.90
23846118--23846151	3	11.3	3	100	0	68	35	0	0	64	0.94
23846150--23846175	3	8.7	3	100	0	52	34	0	30	34	1.58
23846425--23846469	17	2.6	17	83	13	56	17	4	2	75	1.07
23849157--23849205	24	2.0	24	100	0	98	20	8	12	59	1.58
23849454--23849506	27	1.9	28	88	3	81	28	28	20	22	1.99
23849377--23849684	103	3.0	102	88	4	442	32	26	18	22	1.97
23849556--23849608	27	2.0	27	100	0	106	26	30	24	18	1.98
23862409--23862636	33	6.5	33	67	25	112	31	27	20	21	1.98
23862436--23862637	103	2.0	103	93	0	350	31	26	20	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23863825--23863858	11	2.8	12	91	8	52	35	8	11	44	1.72
23877197--23877237	13	3.2	12	83	10	55	56	2	2	39	1.26
23881178--23881206	14	2.1	14	100	0	58	37	6	20	34	1.80
23890441--23890530	39	2.3	40	81	11	105	20	26	27	25	1.99
23900445--23900502	29	2.0	29	100	0	116	34	27	10	27	1.89
23907078--23907122	15	2.8	17	80	13	58	64	0	35	0	0.94
23911566--23911786	111	2.0	111	82	5	268	23	25	25	25	2.00
23919799--23919994	103	1.9	103	82	2	250	34	16	23	25	1.95
23923331--23923396	20	3.1	22	78	12	66	57	1	0	40	1.08
23923343--23923372	16	1.9	15	93	6	51	63	0	0	36	0.95
23923327--23923409	29	2.8	29	77	20	84	60	1	0	38	1.05
23923851--23923899	25	1.9	26	83	4	64	28	2	4	65	1.22
23924179--23924229	9	5.6	9	75	13	50	56	1	1	39	1.22
23924258--23924306	22	2.3	21	79	10	55	53	4	2	40	1.32
23924648--23924681	18	1.9	17	88	5	50	29	0	2	67	1.05
23924810--23924839	2	15.0	2	100	0	60	50	0	0	50	1.00
23929137--23929328	95	2.0	96	98	1	377	48	9	6	35	1.62
23929403--23929434	16	2.1	16	94	5	57	28	0	0	71	0.86
23930949--23930978	15	1.9	16	93	6	53	36	0	13	50	1.42
23934822--23934861	18	2.2	18	100	0	80	50	22	0	27	1.50
23934835--23934919	24	3.7	23	71	17	77	44	25	0	29	1.54
23934867--23934899	17	1.9	17	93	0	57	48	15	0	36	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23934826--23934920	46	2.0	47	93	2	165	45	23	0	31	1.53
23934822--23934903	18	5.1	17	70	18	68	47	21	0	30	1.51
23935031--23935118	23	3.8	22	75	22	90	46	26	0	27	1.53
23935039--23935082	19	2.4	19	96	3	81	45	29	0	25	1.54
23935005--23935122	48	2.5	47	95	2	218	48	26	0	25	1.52
23938902--23939210	123	2.5	124	94	0	530	31	21	16	31	1.95
23953285--23953425	41	3.4	41	86	0	192	24	22	21	31	1.99
23958940--23959073	46	3.0	46	94	3	229	29	22	16	32	1.96
23962811--23962877	35	1.9	34	85	8	91	23	13	19	43	1.86
23966491--23966523	15	2.2	15	94	0	57	0	30	27	42	1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136