genome.fa.s10.2.7.7.80.10.50.1000.135.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  135  of  136  ( 16211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46869585--46869651	34	1.9	35	90	3	109	46	13	8	31	1.74
46870484--46870514	2	15.5	2	93	0	53	48	0	3	48	1.17
46874761--46874786	9	2.9	9	100	0	52	23	7	34	34	1.83
46878191--46878350	79	2.0	79	96	0	293	30	23	11	33	1.91
46880326--46880377	26	2.0	26	100	0	104	30	19	26	23	1.98
46883712--46883866	77	2.0	77	100	0	310	26	10	11	51	1.70
46883857--46883920	31	2.1	31	91	5	103	23	18	4	53	1.64
46886601--46886675	32	2.5	28	75	22	73	52	4	1	42	1.28
46901569--46901604	4	9.0	4	100	0	72	50	25	0	25	1.50
46915510--46915578	27	2.4	28	81	11	70	69	2	4	23	1.20
46921692--46921727	12	3.0	12	91	0	54	41	25	8	25	1.83
46926706--46926734	12	2.3	13	94	5	51	0	10	0	89	0.48
46928214--46928286	22	3.1	22	76	16	76	54	1	4	39	1.28
46930776--46930814	2	19.5	2	100	0	78	48	0	0	51	1.00
46938022--46938469	150	3.0	150	99	0	887	31	9	35	23	1.87
46950116--46950274	78	2.0	79	98	1	311	47	3	3	45	1.39
46954854--46954894	11	3.7	11	80	0	55	19	14	9	56	1.66
46955132--46955165	12	3.1	11	91	8	52	61	0	0	38	0.96
46955455--46955497	15	2.8	16	78	7	52	53	0	0	46	1.00
46957879--46957971	48	1.9	48	93	0	159	24	22	9	43	1.83
46960483--46960516	12	2.8	12	100	0	68	14	32	8	44	1.76
46974067--46974110	22	2.0	22	82	8	54	65	6	2	25	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46979012--46979093	30	2.7	30	77	11	85	40	9	4	45	1.59
46991290--46991517	110	2.1	111	98	0	440	34	7	8	50	1.60
46994320--46994357	17	2.2	18	85	4	51	65	2	7	23	1.32
46997206--46997258	15	3.5	15	80	10	54	67	3	1	26	1.17
46997473--46997535	20	3.1	20	81	6	74	39	0	0	60	0.97
46997759--46997839	39	2.1	39	95	0	144	61	6	9	22	1.49
46997771--46997839	21	3.5	20	69	18	63	59	7	10	23	1.54
47000115--47000166	16	3.2	16	80	0	68	32	21	5	40	1.77
47000938--47001032	44	2.1	46	84	7	124	35	25	5	33	1.78
47001017--47001068	16	3.2	16	80	0	68	32	21	5	40	1.77
47007401--47007462	23	2.6	25	78	14	78	27	17	6	48	1.72
47013658--47013824	54	2.8	61	80	14	222	37	19	23	19	1.94
47019530--47019660	69	1.9	69	85	3	183	34	15	25	25	1.95
47027941--47027997	21	2.6	23	77	5	64	50	1	1	45	1.22
47032492--47032540	7	7.1	7	86	4	55	69	0	10	20	1.17
47032552--47032606	28	2.0	28	89	7	85	40	1	21	36	1.64
47033035--47033091	23	2.5	23	88	0	87	29	1	15	52	1.53
47033685--47033733	21	2.3	21	96	0	89	22	8	30	38	1.83
47033822--47033846	12	2.1	12	100	0	50	16	32	20	32	1.94
47036176--47036224	25	1.9	26	84	12	66	36	0	2	61	1.08
47040168--47040222	28	2.0	28	89	7	85	40	0	21	38	1.54
47040643--47040698	23	2.4	23	90	0	94	32	1	14	51	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47045295--47045433	46	3.0	46	88	0	206	36	7	25	30	1.84
47052591--47052699	54	2.0	54	94	3	193	35	10	9	44	1.70
47053529--47053560	6	5.3	6	96	0	55	50	0	0	50	1.00
47064583--47064648	29	2.4	27	82	7	78	66	0	3	30	1.06
47064604--47064650	7	6.6	7	80	11	51	72	0	0	27	0.85
47066788--47066840	27	2.0	26	82	10	63	30	1	11	56	1.45
47068446--47068487	19	2.2	20	82	4	50	28	4	2	64	1.26
47077733--47078416	250	2.7	249	81	7	766	43	17	9	29	1.81
47081956--47082019	30	2.1	32	85	5	87	48	9	0	42	1.35
47083274--47083316	7	6.1	7	97	0	77	39	0	0	60	0.97
47094899--47095202	108	2.7	113	81	9	313	28	13	17	40	1.87
47098141--47098183	21	2.0	21	82	8	52	30	2	4	62	1.28
47098293--47098347	28	2.0	28	85	7	76	41	0	12	45	1.42
47100027--47100265	79	3.0	79	100	0	478	42	16	11	30	1.83
47101209--47101266	26	2.3	24	78	18	73	53	0	10	36	1.35
47102041--47102086	21	2.2	21	84	0	56	45	8	0	45	1.34
47105195--47105250	27	2.1	27	100	0	112	41	16	10	32	1.82
47107322--47107408	30	2.9	30	91	0	138	44	24	26	4	1.73
47109634--47109759	55	2.3	56	91	1	200	33	19	11	35	1.87
47111712--47111775	29	2.2	29	82	2	74	35	6	15	42	1.72
47113290--47113332	21	2.0	21	81	0	50	37	0	11	51	1.39
47113362--47113418	29	1.9	30	85	3	80	36	5	19	38	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47113362--47113426	29	2.3	28	82	10	71	40	4	18	36	1.71
47119827--47119856	3	10.0	3	100	0	60	66	0	33	0	0.92
47122786--47122994	103	2.0	104	98	1	402	28	13	9	48	1.72
47141331--47141370	2	20.5	2	94	5	73	0	50	0	50	1.00
47141371--47141537	87	1.9	87	100	0	334	22	12	19	45	1.84
47153587--47153640	24	2.1	27	83	13	69	37	0	1	61	1.07
47158285--47158320	18	2.1	17	89	5	54	19	0	2	77	0.88
47162975--47163021	23	2.1	22	84	7	60	46	6	2	44	1.40
47163067--47163192	30	4.5	29	69	19	97	34	7	7	50	1.57
47163025--47163192	81	2.1	82	98	1	329	36	5	7	50	1.54
47170231--47170402	30	5.8	30	80	5	188	31	29	26	11	1.92
47170875--47171045	30	5.7	30	85	0	207	9	27	32	30	1.88
47171604--47172192	155	3.8	152	87	5	810	52	7	9	30	1.62
47172084--47172327	135	1.8	136	91	2	411	51	7	8	32	1.60
47173115--47173793	338	2.0	340	97	1	1292	37	13	9	39	1.77
47176498--47176537	19	2.1	19	86	9	55	42	0	5	52	1.23
47177926--47177952	6	4.5	6	100	0	54	14	0	0	85	0.61
47179134--47179194	5	12.6	5	80	19	60	16	0	0	83	0.64
47179139--47179194	7	8.0	7	84	15	80	16	0	0	83	0.64
47188666--47189119	154	3.0	151	86	5	653	31	8	7	52	1.59
47191249--47191494	48	5.1	48	97	0	449	45	15	10	28	1.79
47203262--47203296	2	17.5	2	100	0	70	51	0	48	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47203697--47203740	21	2.1	21	83	4	54	50	18	15	15	1.79
47237250--47237306	30	1.9	30	88	0	87	52	3	3	40	1.35
47240851--47240899	21	2.2	23	82	10	57	38	12	6	42	1.67
47245132--47245167	16	2.2	16	90	0	54	36	22	22	19	1.95
47245505--47245533	2	14.5	2	100	0	58	51	0	0	48	1.00
47248270--47248332	31	2.0	31	90	6	101	33	6	11	49	1.64
47254072--47254102	6	5.2	6	96	0	53	16	19	48	16	1.81
47264367--47264401	18	1.9	18	88	0	52	22	40	11	25	1.88
47282062--47282138	33	2.4	32	82	4	91	48	16	7	27	1.74
47282128--47282194	35	1.9	35	88	8	102	46	11	8	32	1.72
47286699--47286814	60	1.9	60	91	0	187	37	16	10	36	1.83
47289173--47289288	21	5.8	19	66	23	60	33	1	12	52	1.49
47289247--47289288	21	2.0	21	95	0	75	30	0	11	57	1.35
47289173--47289348	82	2.2	81	95	3	327	32	2	11	52	1.50
47289338--47289443	8	12.1	8	69	16	59	37	0	10	51	1.36
47289328--47289456	27	4.8	27	100	0	258	36	0	11	51	1.38
47289345--47289429	19	4.7	18	65	22	52	37	0	10	51	1.37
47289372--47289467	19	5.2	18	66	21	56	37	0	9	53	1.34
47289587--47289629	15	2.8	15	89	3	59	58	2	2	37	1.24
47293140--47293385	116	2.1	116	83	3	307	26	21	17	33	1.96
47293222--47293739	116	4.5	113	76	5	403	29	22	16	31	1.96
47305561--47306115	111	5.0	111	98	0	1074	33	11	15	39	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47306653--47306692	20	2.0	20	90	0	62	50	12	10	27	1.72
47306641--47306707	34	1.9	35	90	3	109	46	13	8	31	1.74
47314674--47314724	25	2.0	25	100	0	102	52	23	3	19	1.62
47315901--47315950	24	2.2	23	85	7	66	30	14	12	44	1.81
47337547--47337602	28	2.0	28	100	0	112	28	14	14	42	1.84
47338847--47338891	21	2.1	21	84	8	56	64	2	2	31	1.18
47339220--47339266	18	2.6	19	83	6	53	36	0	4	59	1.17
47366724--47366766	21	2.0	23	86	9	63	51	0	6	41	1.29
47372301--47372357	16	3.6	16	95	0	87	29	0	36	33	1.58
47383650--47383689	21	1.9	21	85	10	55	62	5	0	32	1.17

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136