genome.fa.s10.2.7.7.80.10.50.1000.93.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr6
Parameters: 2 7 7 80 10 50 1000
Length:  47432654

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   

This is table  93  of  136  ( 16211 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30976170--30976657	222	2.2	225	81	6	565	37	18	9	34	1.84
30981352--30981982	326	1.9	329	85	2	858	34	19	11	34	1.88
30982183--30982239	14	4.2	13	77	16	55	56	21	1	21	1.52
30982181--30982240	21	2.9	20	75	5	57	58	20	1	20	1.48
30982210--30982240	14	2.2	14	100	0	62	61	19	0	19	1.35
30982474--30982515	17	2.5	17	96	0	75	52	0	2	45	1.13
30984504--30984556	26	2.1	24	83	13	63	33	20	28	16	1.95
30987085--30987121	14	2.6	15	83	8	51	62	0	5	32	1.18
30990752--30990938	91	2.0	92	91	1	304	45	15	12	25	1.82
30993659--30993695	16	2.2	17	90	4	58	81	0	2	16	0.81
30993661--30993695	11	3.3	11	88	4	54	82	0	2	14	0.77
30994913--30995405	44	11.2	42	62	15	97	23	24	25	26	2.00
30994905--30995656	88	8.5	88	93	0	1164	24	25	23	26	2.00
30998855--30998893	6	6.3	6	82	5	51	5	12	0	82	0.83
30998855--30998884	12	2.5	12	100	0	60	6	10	0	83	0.81
30998898--30998986	16	5.3	16	80	10	106	11	1	5	82	0.89
30998897--30998982	9	9.9	9	78	15	92	12	1	5	80	0.95
30998897--30998982	26	3.3	25	80	16	104	12	1	5	80	0.95
30998896--30998986	34	2.7	33	83	13	121	12	1	5	81	0.91
30998915--30998983	10	7.7	10	74	23	73	11	0	5	82	0.83
31009890--31009992	9	11.4	9	84	8	138	25	9	23	41	1.84
31023848--31023890	9	4.8	9	77	11	52	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31023849--31023891	14	3.1	14	80	3	52	48	0	0	51	1.00
31029584--31029636	13	4.1	13	77	0	61	37	24	7	30	1.83
31035618--31035649	16	2.0	16	93	0	55	25	15	0	59	1.36
31041954--31042001	22	2.2	22	100	0	96	37	18	4	39	1.70
31047636--31047677	18	2.4	18	80	15	52	54	4	7	33	1.49
31054550--31054655	37	2.7	38	81	5	115	33	25	16	24	1.96
31055476--31055512	11	3.5	11	82	17	51	0	27	0	72	0.84
31055475--31055518	17	2.4	18	85	11	63	0	27	0	72	0.85
31055662--31056504	421	2.0	421	100	0	1686	24	13	11	49	1.75
31062198--31062360	74	2.2	74	100	0	326	39	7	8	44	1.63
31063271--31063330	26	2.2	28	79	5	70	28	11	1	58	1.43
31070307--31070348	9	4.7	9	82	8	50	59	0	7	33	1.25
31073656--31073691	16	2.2	16	95	0	63	41	13	19	25	1.88
31081599--31081631	7	4.7	7	100	0	66	30	15	0	54	1.41
31083824--31083876	20	2.6	20	76	8	54	64	7	0	28	1.21
31087468--31087524	29	1.9	29	85	3	78	56	7	10	26	1.59
31088240--31088273	9	3.8	9	96	0	59	23	11	26	38	1.89
31088240--31088280	9	4.4	9	93	3	55	24	9	26	39	1.86
31091379--31091407	2	14.5	2	100	0	58	48	0	0	51	1.00
31094937--31095056	62	1.9	62	83	3	152	43	15	4	37	1.66
31097474--31097530	26	2.2	26	84	6	71	61	1	1	35	1.17
31107915--31107991	34	2.3	34	86	6	104	25	19	14	40	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31113079--31113111	16	2.0	17	88	5	50	12	18	12	57	1.64
31131122--31131148	8	3.4	8	100	0	54	51	0	0	48	1.00
31131571--31131649	38	2.1	39	82	2	97	36	10	7	45	1.66
31133518--31133542	2	12.5	2	100	0	50	52	0	0	48	1.00
31135536--31135567	3	10.7	3	100	0	64	68	0	0	31	0.90
31137937--31138320	128	3.0	128	90	1	612	38	18	14	28	1.90
31140441--31140803	181	2.0	181	98	0	708	33	18	20	27	1.96
31149072--31149106	6	5.8	6	100	0	70	0	14	0	85	0.59
31159483--31159526	3	14.7	3	90	0	70	34	4	0	61	1.16
31161557--31161700	70	2.0	71	95	4	263	26	12	19	41	1.87
31165869--31169612	120	31.2	120	99	0	7391	41	2	8	47	1.46
31169569--31169610	15	2.7	16	82	14	52	45	0	2	52	1.13
31169560--31169601	15	2.9	15	82	10	52	47	0	0	52	1.00
31173655--31173687	12	2.8	12	90	0	57	15	39	3	42	1.62
31177815--31177905	40	2.3	40	83	7	121	24	23	8	43	1.81
31179282--31179306	8	3.1	8	100	0	50	48	24	0	28	1.52
31180700--31180819	35	3.3	35	72	15	116	29	22	23	25	1.99
31180666--31180838	75	2.3	75	84	2	222	28	21	24	24	1.99
31189359--31189391	12	2.8	12	90	0	57	15	39	3	42	1.62
31190652--31190705	25	2.2	24	78	12	56	55	0	3	40	1.17
31192736--31192898	80	2.0	80	88	2	238	38	19	12	28	1.89
31198672--31198698	4	6.8	4	100	0	54	77	22	0	0	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31201132--31201171	20	2.0	20	90	0	62	27	10	12	50	1.72
31201117--31201183	34	1.9	35	90	3	109	31	8	13	46	1.74
31201111--31201187	14	5.0	15	71	20	52	33	9	14	42	1.77
31202827--31202871	23	2.0	23	95	0	81	26	15	11	46	1.79
31203865--31203910	18	2.6	18	79	6	58	21	0	43	34	1.53
31204446--31204538	33	2.8	32	82	4	105	17	23	40	18	1.90
31210062--31210086	11	2.3	11	100	0	50	24	32	20	24	1.98
31221102--31221160	13	4.5	13	76	0	64	38	27	8	25	1.84
31221099--31221160	26	2.4	26	83	0	88	37	25	8	29	1.85
31227412--31227456	21	2.1	22	83	4	56	48	2	8	40	1.47
31237795--31237832	17	2.2	17	100	0	76	47	26	10	15	1.78
31237895--31237929	17	2.1	17	94	0	61	65	2	5	25	1.28
31239797--31239922	28	4.5	28	88	2	182	32	12	25	29	1.93
31244665--31244706	19	2.2	20	82	4	50	30	7	11	50	1.66
31247462--31247521	27	2.2	27	90	0	93	25	31	8	35	1.85
31258279--31258437	79	2.0	80	98	1	311	40	2	1	55	1.21
31258285--31258460	79	2.3	76	87	7	282	39	3	0	56	1.20
31261049--31261073	13	1.9	13	100	0	50	32	4	0	64	1.12
31261109--31261143	18	2.0	18	94	5	63	42	0	5	51	1.25
31264157--31264209	18	3.0	18	70	13	56	50	0	7	41	1.30
31269725--31269762	15	2.4	16	82	4	51	28	2	0	68	1.03
31270225--31270270	21	2.1	22	84	8	58	54	2	0	43	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31273105--31273153	25	2.0	24	84	4	62	48	2	0	48	1.12
31280837--31280872	12	3.2	12	85	14	51	58	0	0	41	0.98
31284117--31284169	22	2.4	22	83	0	70	26	13	3	56	1.54
31284934--31284975	21	2.0	22	90	4	68	57	9	7	26	1.56
31290171--31290220	15	3.4	15	81	13	52	42	8	0	50	1.32
31292997--31293026	2	15.5	2	93	6	53	50	0	0	50	1.00
31293099--31293139	20	2.0	20	85	0	55	39	14	7	39	1.74
31294281--31294359	38	2.1	38	97	0	149	48	6	10	35	1.62
31294298--31294364	19	3.5	19	66	28	52	47	2	10	38	1.53
31300786--31301108	161	2.0	162	99	0	639	40	11	11	36	1.77
31302388--31302450	20	3.1	20	67	13	56	55	11	9	23	1.64
31314504--31314544	22	2.0	20	85	9	55	48	4	7	39	1.52
31314836--31314884	23	2.1	23	85	7	64	48	8	2	40	1.44
31314912--31314964	25	2.0	25	82	7	61	50	0	0	49	1.00
31314923--31314977	23	2.3	24	81	12	60	52	0	0	47	1.00
31318785--31318839	23	2.4	23	79	11	67	14	21	21	41	1.89
31320953--31320996	11	3.8	11	80	11	52	34	0	0	65	0.93
31320946--31320994	24	2.1	23	92	3	80	38	0	0	61	0.96
31322017--31322433	207	2.0	207	98	0	798	40	8	20	29	1.83
31324532--31324741	105	2.0	105	98	0	402	29	10	15	44	1.80
31327062--31327131	35	2.0	35	83	5	88	62	2	0	34	1.10
31330212--31330264	2	26.5	2	96	0	97	50	47	0	1	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31332474--31332548	31	2.4	30	82	6	87	33	8	4	54	1.48
31339846--31339870	3	8.3	3	100	0	50	0	32	0	68	0.90
31343409--31343509	42	2.4	42	81	5	105	23	13	21	40	1.89
31348775--31348804	15	2.0	15	100	0	60	46	13	13	26	1.80
31349619--31349655	9	4.1	9	92	0	65	29	10	13	45	1.77
31350833--31350885	17	2.9	18	80	11	63	43	5	15	35	1.70
31351076--31351109	17	2.1	16	89	10	52	47	11	0	41	1.40
31351090--31351131	22	1.9	21	85	9	57	40	9	2	47	1.49
31353948--31353998	25	2.2	25	89	10	81	33	0	1	64	1.05
31385800--31385842	21	2.0	21	90	0	68	27	25	11	34	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136